Wall clock time and date at job start Wed Apr 1 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 120.00177 * 2 1 4 4 H 1.48500 * 109.47282 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46872 * 300.00051 * 3 2 1 6 6 H 1.48504 * 109.46986 * 59.99788 * 3 2 1 7 7 C 1.38813 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00457 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99870 * 359.97438 * 7 2 1 10 10 C 1.47169 * 125.59132 * 359.97438 * 9 7 2 11 11 C 1.54666 * 107.34941 * 179.11869 * 10 9 7 12 12 C 1.53314 * 102.71326 * 339.48831 * 11 10 9 13 13 C 1.53305 * 112.21573 * 155.00243 * 12 11 10 14 14 C 1.54663 * 102.71692 * 88.17714 * 13 12 11 15 15 N 1.47170 * 107.35036 * 20.50340 * 14 13 12 16 16 C 1.34774 * 125.59211 * 180.88336 * 15 14 13 17 17 O 1.21626 * 119.99646 * 174.96648 * 16 15 14 18 18 C 1.47158 * 120.00259 * 355.24255 * 16 15 14 19 19 C 1.38409 * 126.88447 * 5.44537 * 18 16 15 20 20 C 1.39671 * 105.35928 * 179.91585 * 19 18 16 21 21 N 1.30861 * 107.86552 * 0.35620 * 20 19 18 22 22 N 1.28449 * 110.92291 * 359.77085 * 21 20 19 23 23 C 1.46498 * 125.18615 * 180.02562 * 22 21 20 24 24 C 1.53772 * 113.61791 * 43.70390 * 23 22 21 25 25 C 1.53954 * 87.02229 * 220.04624 * 24 23 22 26 26 C 1.53779 * 87.10915 * 25.36109 * 25 24 23 27 27 C 1.47785 * 108.81183 * 1.15178 * 15 14 13 28 28 C 1.47784 * 125.59295 * 179.97438 * 9 7 2 29 29 H 0.97000 * 119.99660 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.87251 * 59.67549 * 10 9 7 31 31 H 1.08997 * 109.98185 * 298.62082 * 10 9 7 32 32 H 1.08994 * 110.76011 * 221.18403 * 11 10 9 33 33 H 1.09002 * 110.92114 * 97.86923 * 11 10 9 34 34 H 1.08997 * 110.76675 * 329.86711 * 13 12 11 35 35 H 1.09004 * 110.92256 * 206.55247 * 13 12 11 36 36 H 1.08998 * 109.87120 * 261.06368 * 14 13 12 37 37 H 1.08997 * 109.87009 * 139.94848 * 14 13 12 38 38 H 1.08001 * 127.31611 * 0.02562 * 19 18 16 39 39 H 1.08001 * 126.07021 * 180.10472 * 20 19 18 40 40 H 1.09008 * 112.84771 * 174.90136 * 23 22 21 41 41 H 1.09003 * 113.61738 * 334.56601 * 24 23 22 42 42 H 1.09000 * 113.61912 * 105.46899 * 24 23 22 43 43 H 1.08997 * 113.53962 * 270.81017 * 25 24 23 44 44 H 1.08998 * 113.74431 * 139.94279 * 25 24 23 45 45 H 1.09003 * 113.61612 * 220.08875 * 26 25 24 46 46 H 1.09001 * 113.68995 * 89.19914 * 26 25 24 47 47 H 1.08996 * 110.40568 * 96.37109 * 27 15 14 48 48 H 1.08999 * 110.40079 * 218.78906 * 27 15 14 49 49 H 1.08994 * 110.40312 * 83.35467 * 28 9 7 50 50 H 1.08998 * 110.40024 * 320.94101 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1391 -2.5315 0.0028 11 6 -0.4543 -4.0455 -0.0190 12 6 0.8470 -4.6534 -0.5551 13 6 1.0310 -6.1102 -0.1143 14 6 0.3033 -6.8976 -1.2290 15 7 0.2145 -6.0152 -2.4034 16 6 -0.3672 -6.3288 -3.5780 17 8 -0.4638 -5.4886 -4.4521 18 6 -0.8908 -7.6859 -3.8007 19 6 -0.9568 -8.7130 -2.8753 20 6 -1.5272 -9.7898 -3.5579 21 7 -1.7622 -9.4069 -4.7870 22 7 -1.4036 -8.1862 -4.9637 23 6 -1.5265 -7.4438 -6.2206 24 6 -2.8744 -7.6529 -6.9305 25 6 -2.0823 -7.6912 -8.2500 26 6 -0.8719 -8.1499 -7.4197 27 6 0.8735 -4.7311 -2.0856 28 6 1.9362 -3.7339 0.0017 29 1 -0.4849 0.8401 -0.0004 30 1 -0.5589 -2.0529 -0.8819 31 1 -0.5569 -2.0790 0.9021 32 1 -1.2855 -4.2574 -0.6914 33 1 -0.6678 -4.4131 0.9847 34 1 0.5590 -6.2839 0.8527 35 1 2.0875 -6.3761 -0.0802 36 1 -0.6974 -7.1724 -0.8956 37 1 0.8709 -7.7934 -1.4807 38 1 -0.6370 -8.6868 -1.8441 39 1 -1.7336 -10.7666 -3.1458 40 1 -1.2425 -6.3959 -6.1227 41 1 -3.3562 -8.5988 -6.6829 42 1 -3.5478 -6.7997 -6.8491 43 1 -1.9514 -6.7107 -8.7078 44 1 -2.4387 -8.4429 -8.9543 45 1 0.0691 -7.6973 -7.7326 46 1 -0.8038 -9.2317 -7.3054 47 1 1.9005 -4.7305 -2.4507 48 1 0.3153 -3.9005 -2.5173 49 1 2.2017 -4.0306 1.0164 50 1 2.8151 -3.7524 -0.6427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041289281.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:19 Heat of formation + Delta-G solvation = 88.164051 kcal Electronic energy + Delta-G solvation = -30915.728393 eV Core-core repulsion = 26945.734833 eV Total energy + Delta-G solvation = -3969.993559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.62262 -41.45086 -39.63606 -39.47216 -37.29710 -34.61289 -32.82392 -32.55455 -31.66197 -30.73234 -29.71124 -27.52076 -26.79994 -26.59099 -25.92614 -24.25681 -22.90662 -22.73424 -22.13558 -21.11255 -20.32886 -19.90246 -18.92232 -18.24199 -17.63987 -17.27603 -16.77707 -16.65987 -16.55409 -16.35081 -15.99798 -15.61863 -15.17594 -15.01714 -14.77114 -14.49647 -14.24584 -14.04699 -13.81994 -13.67768 -13.62931 -13.42244 -13.30304 -13.01772 -12.92681 -12.81588 -12.57279 -12.46295 -12.23208 -11.98840 -11.95249 -11.81736 -11.68154 -11.61883 -11.51741 -11.36317 -11.23364 -11.02974 -10.70988 -10.27318 -9.96314 -9.73097 -8.87668 -7.84148 -5.18963 0.18396 1.26199 1.44562 1.45817 1.55796 1.66457 1.98221 2.08599 2.49539 3.22175 3.27631 3.35646 3.43642 3.49718 3.66672 3.69534 3.71385 3.72561 3.80969 3.94867 4.15546 4.24461 4.29306 4.36679 4.50075 4.54393 4.59801 4.63475 4.64410 4.70131 4.74192 4.78255 4.82589 4.84180 4.90700 4.92690 4.94843 4.99872 5.02968 5.07275 5.22001 5.29568 5.32255 5.38052 5.47428 5.60921 5.67122 5.77527 5.78199 6.20300 6.33491 6.86484 7.10930 7.11727 7.79272 8.43127 9.26362 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.002648 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.363918 B =10571.353884 C =11691.077015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.298 1.298 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.086 0.914 9 N -0.628 5.628 10 C 0.187 3.813 11 C -0.111 4.111 12 C -0.072 4.072 13 C -0.105 4.105 14 C 0.090 3.910 15 N -0.597 5.597 16 C 0.594 3.406 17 O -0.588 6.588 18 C -0.061 4.061 19 C -0.182 4.182 20 C -0.006 4.006 21 N -0.290 5.290 22 N -0.255 5.255 23 C 0.090 3.910 24 C -0.136 4.136 25 C -0.122 4.122 26 C -0.135 4.135 27 C 0.137 3.863 28 C 0.147 3.853 29 H 0.244 0.756 30 H -0.004 1.004 31 H 0.006 0.994 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.200 0.800 39 H 0.223 0.777 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.040 0.960 49 H 0.046 0.954 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.101 -25.246 -6.992 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.264 4.264 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.225 1.225 6 H -0.219 1.219 7 C -0.364 4.364 8 H 0.104 0.896 9 N -0.354 5.354 10 C 0.062 3.938 11 C -0.149 4.149 12 C -0.074 4.074 13 C -0.143 4.143 14 C -0.031 4.031 15 N -0.328 5.328 16 C 0.383 3.617 17 O -0.470 6.470 18 C -0.189 4.189 19 C -0.211 4.211 20 C -0.181 4.181 21 N -0.123 5.123 22 N -0.043 5.043 23 C -0.010 4.010 24 C -0.174 4.174 25 C -0.160 4.160 26 C -0.173 4.173 27 C 0.015 3.985 28 C 0.022 3.978 29 H 0.053 0.947 30 H 0.014 0.986 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.216 0.784 39 H 0.239 0.761 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.111 0.889 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.632 -24.911 -8.652 26.502 hybrid contribution 0.431 2.230 0.619 2.354 sum -2.201 -22.681 -8.033 24.162 Atomic orbital electron populations 1.70221 1.06375 1.24918 1.58810 1.25655 0.96557 1.01101 1.03081 0.85041 0.78381 0.79658 0.76483 1.18645 1.22508 1.21923 1.19515 0.91069 0.83723 1.42075 0.89649 1.44908 1.02167 1.01328 1.87019 1.20917 0.83960 0.91896 0.97029 1.22475 0.96160 0.95028 1.01270 1.21484 0.96354 0.96855 0.92713 1.22508 1.02942 0.89888 0.98939 1.22858 1.02629 0.93747 0.83854 1.48295 1.54782 1.17015 1.12715 1.16913 0.77548 0.85775 0.81444 1.90724 1.60178 1.51388 1.44664 1.21336 1.10990 0.96005 0.90523 1.23182 1.04877 0.91182 1.01811 1.24270 1.02606 1.02073 0.89164 1.73060 1.20170 0.96364 1.22702 1.45919 1.41330 1.07725 1.09318 1.23971 1.01469 0.97022 0.78552 1.23337 0.94709 1.03449 0.95875 1.22701 0.94386 1.03339 0.95541 1.23312 0.99355 1.01295 0.93332 1.21828 0.96693 0.84540 0.95431 1.21460 0.94327 0.83639 0.98343 0.94709 0.98551 0.97569 0.92276 0.89239 0.87038 0.88137 0.88777 0.87673 0.78352 0.76097 0.85404 0.88625 0.90543 0.88687 0.88284 0.90411 0.88860 0.91037 0.94131 0.93643 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 10.30 21.65 0.22 -58.87 16 2 C -0.07 -4.15 5.49 84.86 0.47 -3.68 16 3 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 7 C -0.23 -13.15 10.28 84.03 0.86 -12.28 16 8 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 9 N -0.63 -31.72 3.41 -693.70 -2.37 -34.09 16 10 C 0.19 9.36 5.38 86.82 0.47 9.82 16 11 C -0.11 -3.90 5.92 31.27 0.19 -3.71 16 12 C -0.07 -2.17 0.62 -51.87 -0.03 -2.20 16 13 C -0.10 -1.86 5.97 31.26 0.19 -1.67 16 14 C 0.09 1.51 5.00 86.82 0.43 1.94 16 15 N -0.60 -16.45 3.34 -817.23 -2.73 -19.18 16 16 C 0.59 18.89 7.82 86.59 0.68 19.56 16 17 O -0.59 -23.31 14.74 -4.11 -0.06 -23.38 16 18 C -0.06 -1.59 6.92 40.79 0.28 -1.31 16 19 C -0.18 -3.27 9.43 22.66 0.21 -3.06 16 20 C -0.01 -0.10 12.03 85.18 1.02 0.92 16 21 N -0.29 -6.60 11.14 -57.14 -0.64 -7.24 16 22 N -0.26 -6.56 3.46 -311.82 -1.08 -7.64 16 23 C 0.09 2.19 4.45 45.51 0.20 2.39 16 24 C -0.14 -2.59 7.76 31.18 0.24 -2.35 16 25 C -0.12 -1.79 8.09 31.18 0.25 -1.54 16 26 C -0.13 -2.51 7.80 31.12 0.24 -2.27 16 27 C 0.14 4.59 5.89 86.22 0.51 5.10 16 28 C 0.15 5.45 6.28 86.14 0.54 5.99 16 29 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 30 H 0.00 -0.22 7.39 -2.39 -0.02 -0.24 16 31 H 0.01 0.34 7.49 -2.39 -0.02 0.32 16 32 H 0.06 2.08 8.01 -2.39 -0.02 2.06 16 33 H 0.09 2.67 7.82 -2.39 -0.02 2.65 16 34 H 0.11 1.52 7.78 -2.39 -0.02 1.50 16 35 H 0.10 1.45 8.08 -2.38 -0.02 1.43 16 36 H 0.09 1.28 7.00 -2.39 -0.02 1.26 16 37 H 0.11 1.20 6.90 -2.39 -0.02 1.19 16 38 H 0.20 2.15 4.65 -2.91 -0.01 2.13 16 39 H 0.22 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.13 3.78 5.62 -2.38 -0.01 3.76 16 41 H 0.10 1.84 7.77 -2.39 -0.02 1.82 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.75 8.01 -2.39 -0.02 1.73 16 47 H 0.07 2.35 7.85 -2.39 -0.02 2.33 16 48 H 0.04 1.73 7.91 -2.39 -0.02 1.72 16 49 H 0.05 1.55 8.07 -2.39 -0.02 1.53 16 50 H 0.04 1.63 7.80 -2.39 -0.02 1.61 16 Total: -1.00 -78.65 387.31 3.08 -75.58 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.94 Total: 14.39 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.76 Total: 11.66 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.59 Total: -127.01 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.06 Total: -23.38 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -78.65 3.08 -75.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041289281.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.743 kcal (2) G-P(sol) polarization free energy of solvation -78.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds