Wall clock time and date at job start Wed Apr 1 2020 02:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47086 * 300.00371 * 3 2 1 6 6 H 1.48505 * 109.46759 * 59.99911 * 3 2 1 7 7 C 1.38821 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67741 * 359.97438 * 9 7 2 11 11 C 1.55180 * 105.00854 * 203.86474 * 10 9 7 12 12 C 1.53655 * 101.41610 * 324.50338 * 11 10 9 13 13 C 1.53723 * 111.40977 * 272.69970 * 12 11 10 14 14 C 1.55181 * 101.43536 * 272.72568 * 13 12 11 15 15 N 1.47564 * 105.01044 * 324.52176 * 14 13 12 16 16 C 1.34770 * 125.67489 * 203.86081 * 15 14 13 17 17 O 1.21631 * 119.99943 * 174.60027 * 16 15 14 18 18 C 1.47165 * 120.00395 * 354.60161 * 16 15 14 19 19 C 1.38410 * 126.88129 * 353.43719 * 18 16 15 20 20 C 1.39674 * 105.35722 * 179.97438 * 19 18 16 21 21 N 1.30865 * 107.86085 * 0.02562 * 20 19 18 22 22 N 1.28437 * 110.92748 * 359.71046 * 21 20 19 23 23 C 1.46506 * 125.19030 * 180.28158 * 22 21 20 24 24 C 1.53780 * 113.61106 * 30.71825 * 23 22 21 25 25 C 1.53782 * 87.07938 * 220.01926 * 24 23 22 26 26 C 1.53777 * 87.08245 * 25.43532 * 25 24 23 27 27 C 1.47401 * 108.64692 * 23.85748 * 15 14 13 28 28 C 1.47406 * 125.67408 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.33251 * 322.75230 * 10 9 7 31 31 H 1.09003 * 110.33346 * 84.87681 * 10 9 7 32 32 H 1.09000 * 111.03595 * 206.47535 * 11 10 9 33 33 H 1.08998 * 111.03674 * 82.54238 * 11 10 9 34 34 H 1.09001 * 111.00797 * 154.69322 * 13 12 11 35 35 H 1.08998 * 111.07640 * 30.78788 * 13 12 11 36 36 H 1.09003 * 110.33411 * 205.63912 * 14 13 12 37 37 H 1.09000 * 110.42175 * 83.45176 * 14 13 12 38 38 H 1.08004 * 127.32034 * 359.97438 * 19 18 16 39 39 H 1.07999 * 126.06706 * 180.02562 * 20 19 18 40 40 H 1.09004 * 112.84915 * 162.02670 * 23 22 21 41 41 H 1.08996 * 113.62023 * 334.56780 * 24 23 22 42 42 H 1.09008 * 113.61389 * 105.47315 * 24 23 22 43 43 H 1.09000 * 113.61729 * 270.88573 * 25 24 23 44 44 H 1.08995 * 113.68957 * 139.99818 * 25 24 23 45 45 H 1.08999 * 113.61642 * 220.02054 * 26 25 24 46 46 H 1.08995 * 113.68935 * 89.12436 * 26 25 24 47 47 H 1.09003 * 109.98351 * 117.24798 * 27 15 14 48 48 H 1.08996 * 109.98796 * 238.50748 * 27 15 14 49 49 H 1.09002 * 109.98232 * 58.54207 * 28 9 7 50 50 H 1.09002 * 109.98622 * 297.24108 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1428 -2.5340 -0.0017 11 6 -0.4072 -3.9383 0.6034 12 6 0.7833 -4.7369 0.0502 13 6 0.4696 -5.3245 -1.3351 14 6 -0.1989 -6.6720 -0.9536 15 7 0.5168 -7.1250 0.2548 16 6 0.6126 -8.4004 0.6797 17 8 1.3111 -8.6713 1.6379 18 6 -0.1279 -9.4653 -0.0155 19 6 -1.0544 -9.3058 -1.0314 20 6 -1.4723 -10.5981 -1.3571 21 7 -0.8306 -11.4348 -0.5820 22 7 -0.0344 -10.8095 0.2084 23 6 0.8380 -11.4413 1.2014 24 6 1.3191 -12.8442 0.7948 25 6 1.1088 -13.2555 2.2616 26 6 0.0734 -12.1220 2.3490 27 6 1.1094 -5.9505 0.9196 28 6 1.9327 -3.7313 -0.0028 29 1 -0.4850 0.8401 0.0004 30 1 -0.6002 -1.7624 0.6176 31 1 -0.5288 -2.4797 -1.0197 32 1 -1.3523 -4.3469 0.2458 33 1 -0.3842 -3.9056 1.6927 34 1 1.3836 -5.4890 -1.9059 35 1 -0.2224 -4.6861 -1.8842 36 1 -0.0781 -7.3963 -1.7592 37 1 -1.2562 -6.5233 -0.7342 38 1 -1.3841 -8.3791 -1.4774 39 1 -2.1966 -10.8603 -2.1141 40 1 1.6394 -10.7844 1.5397 41 1 0.6501 -13.3507 0.0991 42 1 2.3618 -12.8736 0.4783 43 1 1.9851 -13.0958 2.8898 44 1 0.6787 -14.2500 2.3802 45 1 0.1103 -11.5682 3.2871 46 1 -0.9367 -12.4297 2.0786 47 1 0.6754 -5.8256 1.9117 48 1 2.1896 -6.0728 0.9987 49 1 2.5733 -3.8513 0.8709 50 1 2.5134 -3.8769 -0.9137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041289282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:24 Heat of formation + Delta-G solvation = 109.917856 kcal Electronic energy + Delta-G solvation = -30624.573476 eV Core-core repulsion = 26655.523233 eV Total energy + Delta-G solvation = -3969.050243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79456 -40.25589 -38.78544 -38.36729 -35.82417 -32.95189 -31.96252 -31.29518 -30.34005 -29.15373 -28.57422 -26.11642 -26.05223 -25.58754 -24.22527 -23.16887 -22.10191 -21.81304 -20.28070 -20.24788 -19.23309 -18.86112 -17.43055 -16.83850 -16.63352 -16.34399 -15.87931 -15.68519 -15.42808 -14.85599 -14.54425 -14.30966 -13.94688 -13.84150 -13.52399 -13.29881 -13.03848 -12.91730 -12.83386 -12.65220 -12.55992 -12.48849 -11.90015 -11.63506 -11.54041 -11.36268 -11.25676 -11.04663 -10.99049 -10.95618 -10.82336 -10.69326 -10.27895 -10.10448 -10.02968 -9.98056 -9.78094 -9.53948 -9.36696 -9.15549 -8.70699 -8.65680 -6.86255 -5.68201 -3.09434 1.10888 2.13250 2.44136 2.94865 3.07266 3.38159 3.44073 3.46293 3.96995 4.12715 4.19800 4.37797 4.46134 4.46258 4.62753 4.65317 4.81008 4.94925 4.95761 5.19168 5.22058 5.26424 5.33330 5.35808 5.39697 5.45324 5.48818 5.50035 5.53380 5.54331 5.61149 5.74905 5.79582 5.90058 5.96192 5.98158 6.06889 6.18149 6.19216 6.30203 6.34408 6.51530 6.56465 6.58506 6.71173 6.79010 7.35742 7.46970 7.60423 7.82561 7.85287 7.99973 8.32773 9.19332 9.79805 10.44549 11.35928 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002200 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.476995 B =12722.623272 C =13269.222809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.221 4.221 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.154 3.846 11 C -0.132 4.132 12 C -0.081 4.081 13 C -0.114 4.114 14 C 0.089 3.911 15 N -0.597 5.597 16 C 0.602 3.398 17 O -0.547 6.547 18 C -0.031 4.031 19 C -0.199 4.199 20 C -0.007 4.007 21 N -0.277 5.277 22 N -0.246 5.246 23 C 0.114 3.886 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.141 4.141 27 C 0.128 3.872 28 C 0.152 3.848 29 H 0.251 0.749 30 H 0.105 0.895 31 H 0.013 0.987 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.170 0.830 39 H 0.186 0.814 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.027 0.973 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.718 -24.017 -0.967 24.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.033 4.033 15 N -0.330 5.330 16 C 0.390 3.610 17 O -0.426 6.426 18 C -0.159 4.159 19 C -0.228 4.228 20 C -0.183 4.183 21 N -0.109 5.109 22 N -0.033 5.033 23 C 0.014 3.986 24 C -0.177 4.177 25 C -0.175 4.175 26 C -0.179 4.179 27 C 0.006 3.994 28 C 0.025 3.975 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.031 0.969 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.187 0.813 39 H 0.203 0.797 40 H 0.164 0.836 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.045 0.955 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.143 -25.191 -0.083 25.282 hybrid contribution 0.226 1.785 -0.352 1.833 sum -1.917 -23.406 -0.434 23.489 Atomic orbital electron populations 1.69805 1.04868 1.24663 1.57765 1.24784 0.95740 0.97709 1.02495 0.86005 0.78677 0.83625 0.77238 1.20536 1.21785 1.21753 1.19120 0.90541 0.82393 1.42847 0.90437 1.44606 1.01904 0.99552 1.86911 1.21973 0.84597 0.92240 0.98219 1.22922 0.95166 0.98797 1.00149 1.21558 0.98786 0.93577 0.94329 1.22681 1.01468 0.94261 0.96801 1.22913 0.96610 0.96964 0.86832 1.48248 1.52656 1.05270 1.26801 1.16486 0.80791 0.80716 0.83019 1.90756 1.41270 1.81878 1.28708 1.21362 1.05160 0.86148 1.03266 1.22780 1.00592 1.00078 0.99316 1.23591 1.03011 0.89939 1.01733 1.73060 1.05919 1.26902 1.05060 1.45778 1.28638 1.02694 1.26205 1.23745 0.92995 0.94692 0.87180 1.23320 1.02505 0.93802 0.98086 1.22695 0.99483 0.98985 0.96292 1.23341 0.99411 0.97037 0.98137 1.21929 0.98645 0.82591 0.96199 1.21048 0.92706 0.85483 0.98227 0.93790 0.87722 0.96885 0.92120 0.91886 0.90520 0.88989 0.89736 0.90614 0.81296 0.79734 0.83583 0.88067 0.90432 0.89354 0.90192 0.90113 0.89100 0.90866 0.90935 0.95518 0.95582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.27 10.10 55.49 0.56 -25.71 16 2 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.00 10.28 -15.06 -0.15 -6.16 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.82 3.41 -170.41 -0.58 -15.41 16 10 C 0.15 3.53 5.77 -2.31 -0.01 3.52 16 11 C -0.13 -2.30 5.89 -25.24 -0.15 -2.45 16 12 C -0.08 -1.29 0.62 -153.99 -0.10 -1.39 16 13 C -0.11 -1.51 5.89 -25.20 -0.15 -1.66 16 14 C 0.09 0.99 5.02 -2.30 -0.01 0.98 16 15 N -0.60 -8.11 3.34 -172.22 -0.58 -8.68 16 16 C 0.60 8.79 7.82 -12.64 -0.10 8.69 16 17 O -0.55 -9.19 14.98 5.25 0.08 -9.12 16 18 C -0.03 -0.40 6.89 -82.06 -0.57 -0.97 16 19 C -0.20 -2.11 9.28 -38.98 -0.36 -2.47 16 20 C -0.01 -0.07 12.03 -17.43 -0.21 -0.28 16 21 N -0.28 -3.27 11.04 30.59 0.34 -2.93 16 22 N -0.25 -3.03 3.48 -49.90 -0.17 -3.21 16 23 C 0.11 1.22 4.25 -67.11 -0.29 0.94 16 24 C -0.14 -1.16 7.69 -25.92 -0.20 -1.36 16 25 C -0.14 -0.94 8.08 -25.92 -0.21 -1.15 16 26 C -0.14 -1.27 7.88 -25.92 -0.20 -1.47 16 27 C 0.13 1.90 6.05 -3.65 -0.02 1.88 16 28 C 0.15 2.99 6.42 -3.65 -0.02 2.97 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.11 2.76 5.89 -51.93 -0.31 2.45 16 31 H 0.01 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.06 0.93 7.88 -51.93 -0.41 0.52 16 33 H 0.06 1.13 7.79 -51.93 -0.40 0.72 16 34 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 35 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 36 H 0.08 0.79 5.92 -51.93 -0.31 0.49 16 37 H 0.08 0.76 7.73 -51.93 -0.40 0.36 16 38 H 0.17 1.42 4.98 -52.48 -0.26 1.16 16 39 H 0.19 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.15 1.75 6.10 -51.93 -0.32 1.43 16 41 H 0.10 0.90 7.54 -51.93 -0.39 0.51 16 42 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.12 7.61 -51.93 -0.40 0.73 16 48 H 0.07 1.11 7.78 -51.93 -0.40 0.70 16 49 H 0.03 0.53 7.78 -51.93 -0.40 0.13 16 50 H 0.03 0.51 7.61 -51.93 -0.40 0.12 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -31.68 385.86 -10.12 -41.80 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.71 Total: 1.50 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.85 Total: -0.80 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -0.43 Total: -55.94 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.68 -10.12 -41.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041289282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.718 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds