Wall clock time and date at job start Wed Apr 1 2020 02:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00307 * 2 1 4 4 H 1.48500 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47086 * 300.00371 * 3 2 1 6 6 H 1.48505 * 109.46759 * 59.99911 * 3 2 1 7 7 C 1.38821 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99928 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.47562 * 125.67741 * 359.97438 * 9 7 2 11 11 C 1.55180 * 105.00854 * 203.86474 * 10 9 7 12 12 C 1.53655 * 101.41610 * 324.50338 * 11 10 9 13 13 C 1.53723 * 111.40977 * 272.69970 * 12 11 10 14 14 C 1.55181 * 101.43536 * 272.72568 * 13 12 11 15 15 N 1.47564 * 105.01044 * 324.52176 * 14 13 12 16 16 C 1.34770 * 125.67489 * 203.86081 * 15 14 13 17 17 O 1.21631 * 119.99943 * 174.60027 * 16 15 14 18 18 C 1.47165 * 120.00395 * 354.60161 * 16 15 14 19 19 C 1.38410 * 126.88129 * 353.43719 * 18 16 15 20 20 C 1.39674 * 105.35722 * 179.97438 * 19 18 16 21 21 N 1.30865 * 107.86085 * 0.02562 * 20 19 18 22 22 N 1.28437 * 110.92748 * 359.71046 * 21 20 19 23 23 C 1.46506 * 125.19030 * 180.28158 * 22 21 20 24 24 C 1.53780 * 113.61106 * 30.71825 * 23 22 21 25 25 C 1.53782 * 87.07938 * 220.01926 * 24 23 22 26 26 C 1.53777 * 87.08245 * 25.43532 * 25 24 23 27 27 C 1.47401 * 108.64692 * 23.85748 * 15 14 13 28 28 C 1.47406 * 125.67408 * 179.97438 * 9 7 2 29 29 H 0.97001 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.33251 * 322.75230 * 10 9 7 31 31 H 1.09003 * 110.33346 * 84.87681 * 10 9 7 32 32 H 1.09000 * 111.03595 * 206.47535 * 11 10 9 33 33 H 1.08998 * 111.03674 * 82.54238 * 11 10 9 34 34 H 1.09001 * 111.00797 * 154.69322 * 13 12 11 35 35 H 1.08998 * 111.07640 * 30.78788 * 13 12 11 36 36 H 1.09003 * 110.33411 * 205.63912 * 14 13 12 37 37 H 1.09000 * 110.42175 * 83.45176 * 14 13 12 38 38 H 1.08004 * 127.32034 * 359.97438 * 19 18 16 39 39 H 1.07999 * 126.06706 * 180.02562 * 20 19 18 40 40 H 1.09004 * 112.84915 * 162.02670 * 23 22 21 41 41 H 1.08996 * 113.62023 * 334.56780 * 24 23 22 42 42 H 1.09008 * 113.61389 * 105.47315 * 24 23 22 43 43 H 1.09000 * 113.61729 * 270.88573 * 25 24 23 44 44 H 1.08995 * 113.68957 * 139.99818 * 25 24 23 45 45 H 1.08999 * 113.61642 * 220.02054 * 26 25 24 46 46 H 1.08995 * 113.68935 * 89.12436 * 26 25 24 47 47 H 1.09003 * 109.98351 * 117.24798 * 27 15 14 48 48 H 1.08996 * 109.98796 * 238.50748 * 27 15 14 49 49 H 1.09002 * 109.98232 * 58.54207 * 28 9 7 50 50 H 1.09002 * 109.98622 * 297.24108 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1428 -2.5340 -0.0017 11 6 -0.4072 -3.9383 0.6034 12 6 0.7833 -4.7369 0.0502 13 6 0.4696 -5.3245 -1.3351 14 6 -0.1989 -6.6720 -0.9536 15 7 0.5168 -7.1250 0.2548 16 6 0.6126 -8.4004 0.6797 17 8 1.3111 -8.6713 1.6379 18 6 -0.1279 -9.4653 -0.0155 19 6 -1.0544 -9.3058 -1.0314 20 6 -1.4723 -10.5981 -1.3571 21 7 -0.8306 -11.4348 -0.5820 22 7 -0.0344 -10.8095 0.2084 23 6 0.8380 -11.4413 1.2014 24 6 1.3191 -12.8442 0.7948 25 6 1.1088 -13.2555 2.2616 26 6 0.0734 -12.1220 2.3490 27 6 1.1094 -5.9505 0.9196 28 6 1.9327 -3.7313 -0.0028 29 1 -0.4850 0.8401 0.0004 30 1 -0.6002 -1.7624 0.6176 31 1 -0.5288 -2.4797 -1.0197 32 1 -1.3523 -4.3469 0.2458 33 1 -0.3842 -3.9056 1.6927 34 1 1.3836 -5.4890 -1.9059 35 1 -0.2224 -4.6861 -1.8842 36 1 -0.0781 -7.3963 -1.7592 37 1 -1.2562 -6.5233 -0.7342 38 1 -1.3841 -8.3791 -1.4774 39 1 -2.1966 -10.8603 -2.1141 40 1 1.6394 -10.7844 1.5397 41 1 0.6501 -13.3507 0.0991 42 1 2.3618 -12.8736 0.4783 43 1 1.9851 -13.0958 2.8898 44 1 0.6787 -14.2500 2.3802 45 1 0.1103 -11.5682 3.2871 46 1 -0.9367 -12.4297 2.0786 47 1 0.6754 -5.8256 1.9117 48 1 2.1896 -6.0728 0.9987 49 1 2.5733 -3.8513 0.8709 50 1 2.5134 -3.8769 -0.9137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041289282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:23 Heat of formation + Delta-G solvation = 91.911047 kcal Electronic energy + Delta-G solvation = -30625.354310 eV Core-core repulsion = 26655.523233 eV Total energy + Delta-G solvation = -3969.831077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.62816 -41.45420 -39.65966 -39.47305 -37.28127 -34.62104 -32.82795 -32.52941 -31.61030 -30.55982 -30.03791 -27.48827 -26.77161 -26.55758 -25.64024 -24.43863 -23.07870 -22.67256 -22.05984 -21.10952 -20.30849 -19.88711 -18.89433 -18.26490 -17.67838 -17.37901 -16.91993 -16.61841 -16.53266 -16.32360 -15.80167 -15.65246 -15.22281 -14.96285 -14.69788 -14.34577 -14.28936 -14.01128 -13.89192 -13.68914 -13.63945 -13.60564 -13.27709 -13.00145 -12.97324 -12.67631 -12.64306 -12.41491 -12.22452 -11.97368 -11.92437 -11.74341 -11.65620 -11.59041 -11.55947 -11.39321 -11.18659 -11.06233 -10.72231 -10.27484 -9.96035 -9.75777 -8.85302 -7.75829 -5.18902 0.18101 1.25476 1.47813 1.48172 1.58344 1.65075 1.96699 2.07592 2.50638 3.19300 3.27810 3.34629 3.44350 3.52336 3.59371 3.65920 3.70807 3.75276 3.84928 3.95727 4.14801 4.20861 4.25195 4.35663 4.48801 4.52613 4.62000 4.64772 4.67929 4.71338 4.72439 4.75230 4.82575 4.85750 4.88062 4.89635 4.93899 4.96919 5.03608 5.06517 5.21541 5.28600 5.31338 5.33579 5.49741 5.59895 5.69309 5.77422 5.86273 6.29783 6.34449 6.84557 7.10823 7.13784 7.80409 8.44030 9.25982 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028092 B = 0.002200 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.476995 B =12722.623272 C =13269.222809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.625 5.625 10 C 0.158 3.842 11 C -0.115 4.115 12 C -0.070 4.070 13 C -0.110 4.110 14 C 0.094 3.906 15 N -0.596 5.596 16 C 0.599 3.401 17 O -0.579 6.579 18 C -0.060 4.060 19 C -0.186 4.186 20 C -0.007 4.007 21 N -0.290 5.290 22 N -0.254 5.254 23 C 0.099 3.901 24 C -0.132 4.132 25 C -0.122 4.122 26 C -0.140 4.140 27 C 0.136 3.864 28 C 0.147 3.853 29 H 0.246 0.754 30 H 0.067 0.933 31 H -0.003 1.003 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.194 0.806 39 H 0.220 0.780 40 H 0.128 0.872 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.022 0.978 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.310 -25.966 -2.090 26.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.352 5.352 10 C 0.033 3.967 11 C -0.153 4.153 12 C -0.071 4.071 13 C -0.148 4.148 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.389 3.611 17 O -0.461 6.461 18 C -0.187 4.187 19 C -0.214 4.214 20 C -0.182 4.182 21 N -0.122 5.122 22 N -0.041 5.041 23 C -0.002 4.002 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.178 4.178 27 C 0.013 3.987 28 C 0.022 3.978 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.015 0.985 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.211 0.789 39 H 0.236 0.764 40 H 0.146 0.854 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.040 0.960 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.728 -27.166 -1.219 27.330 hybrid contribution 0.424 2.385 -0.018 2.422 sum -2.304 -24.781 -1.238 24.918 Atomic orbital electron populations 1.70051 1.06013 1.24857 1.58747 1.25571 0.96649 1.00740 1.02944 0.85032 0.78066 0.79668 0.76701 1.19362 1.21891 1.21981 1.19449 0.90927 0.83828 1.42201 0.90440 1.44895 1.02885 1.00577 1.86808 1.21748 0.83692 0.94366 0.96869 1.22747 0.97270 0.95701 0.99594 1.21363 0.96295 0.92864 0.96557 1.22660 1.02019 0.95206 0.94893 1.23075 0.97061 0.96090 0.86497 1.48231 1.52636 1.04621 1.27314 1.16759 0.80492 0.81163 0.82735 1.90737 1.42713 1.82410 1.30204 1.21343 1.06567 0.86138 1.04695 1.23110 0.99100 1.01300 0.97937 1.24230 1.02837 0.89451 1.01640 1.73066 1.06185 1.27561 1.05396 1.45940 1.29003 1.02612 1.26581 1.23870 0.93048 0.95268 0.87997 1.23283 1.02651 0.92126 0.98919 1.22686 0.99087 0.98945 0.95296 1.23323 0.99574 0.97704 0.97232 1.21679 0.98390 0.82790 0.95819 1.21203 0.94093 0.84487 0.98015 0.94375 0.91492 0.98462 0.89040 0.92422 0.90160 0.88827 0.87250 0.88537 0.78921 0.76378 0.85416 0.88468 0.89762 0.88356 0.88582 0.90696 0.89618 0.91421 0.91602 0.95974 0.95197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.36 10.10 21.65 0.22 -55.14 16 2 C -0.07 -3.72 5.49 84.86 0.47 -3.26 16 3 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 7 C -0.23 -12.99 10.28 84.04 0.86 -12.13 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.63 -31.21 3.41 -693.05 -2.36 -33.57 16 10 C 0.16 7.35 5.77 86.92 0.50 7.85 16 11 C -0.11 -3.90 5.89 31.56 0.19 -3.72 16 12 C -0.07 -2.13 0.62 -51.84 -0.03 -2.16 16 13 C -0.11 -2.63 5.89 31.59 0.19 -2.44 16 14 C 0.09 1.76 5.02 86.92 0.44 2.19 16 15 N -0.60 -15.06 3.34 -817.03 -2.73 -17.79 16 16 C 0.60 16.92 7.82 86.59 0.68 17.59 16 17 O -0.58 -19.65 14.98 -4.13 -0.06 -19.71 16 18 C -0.06 -1.45 6.89 40.79 0.28 -1.17 16 19 C -0.19 -3.31 9.28 22.66 0.21 -3.10 16 20 C -0.01 -0.11 12.03 85.18 1.02 0.92 16 21 N -0.29 -6.26 11.04 -57.14 -0.63 -6.89 16 22 N -0.25 -5.98 3.48 -311.79 -1.09 -7.07 16 23 C 0.10 2.08 4.25 45.52 0.19 2.28 16 24 C -0.13 -2.05 7.69 31.12 0.24 -1.81 16 25 C -0.12 -1.51 8.08 31.12 0.25 -1.26 16 26 C -0.14 -2.45 7.88 31.12 0.25 -2.21 16 27 C 0.14 3.90 6.05 86.14 0.52 4.42 16 28 C 0.15 5.82 6.42 86.14 0.55 6.37 16 29 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.07 3.65 5.89 -2.39 -0.01 3.64 16 31 H 0.00 -0.13 8.10 -2.39 -0.02 -0.15 16 32 H 0.09 2.56 7.88 -2.39 -0.02 2.54 16 33 H 0.06 2.03 7.79 -2.39 -0.02 2.01 16 34 H 0.08 1.89 7.79 -2.39 -0.02 1.87 16 35 H 0.09 2.27 7.89 -2.39 -0.02 2.25 16 36 H 0.11 1.57 5.92 -2.39 -0.01 1.56 16 37 H 0.10 1.49 7.73 -2.39 -0.02 1.47 16 38 H 0.19 2.32 4.98 -2.91 -0.01 2.31 16 39 H 0.22 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.13 3.16 6.10 -2.39 -0.01 3.14 16 41 H 0.10 1.60 7.54 -2.39 -0.02 1.59 16 42 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 2.03 7.61 -2.39 -0.02 2.01 16 48 H 0.07 1.99 7.78 -2.39 -0.02 1.97 16 49 H 0.02 0.89 7.78 -2.39 -0.02 0.87 16 50 H 0.03 1.16 7.61 -2.39 -0.02 1.15 16 Total: -1.00 -70.95 385.86 3.12 -67.83 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.95 Total: 16.61 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.80 Total: 8.36 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -6.59 Total: -120.46 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.06 Total: -19.71 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.95 3.12 -67.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041289282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.744 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds