Wall clock time and date at job start Wed Apr 1 2020 02:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47331 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47269 * 60.00360 * 3 2 1 7 7 C 1.38808 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.47134 * 125.60447 * 359.97438 * 9 7 2 11 11 C 1.54576 * 107.32895 * 179.04628 * 10 9 7 12 12 C 1.53716 * 102.78671 * 339.11513 * 11 10 9 13 13 C 1.53234 * 111.51397 * 153.95607 * 12 11 10 14 14 C 1.55265 * 102.45587 * 101.28536 * 13 12 11 15 15 N 1.48245 * 103.44759 * 36.20736 * 14 13 12 16 16 C 1.34779 * 126.99824 * 141.50373 * 15 14 13 17 17 O 1.21287 * 119.99528 * 175.00572 * 16 15 14 18 18 C 1.50694 * 120.00518 * 355.01357 * 16 15 14 19 19 H 1.09000 * 109.71536 * 26.55674 * 18 16 15 20 20 C 1.53440 * 109.72012 * 265.94172 * 18 16 15 21 21 C 1.53149 * 109.19091 * 191.76319 * 20 18 16 22 22 C 1.53238 * 109.55520 * 69.43982 * 21 20 18 23 23 N 1.46589 * 108.79617 * 309.41973 * 22 21 20 24 24 N 1.39658 * 127.55264 * 197.34599 * 23 22 21 25 25 C 1.31022 * 108.13112 * 179.87145 * 24 23 22 26 26 C 1.40061 * 108.25438 * 0.04457 * 25 24 23 27 27 C 1.34754 * 107.79870 * 0.02562 * 26 25 24 28 28 C 1.47881 * 105.99694 * 321.54788 * 15 14 13 29 29 C 1.47705 * 125.60800 * 179.97438 * 9 7 2 30 30 H 0.96999 * 120.00503 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.87148 * 59.60253 * 10 9 7 32 32 H 1.09003 * 109.86879 * 298.47810 * 10 9 7 33 33 H 1.08999 * 110.75147 * 97.44217 * 11 10 9 34 34 H 1.08999 * 110.74617 * 220.79259 * 11 10 9 35 35 H 1.08998 * 110.81474 * 219.52162 * 13 12 11 36 36 H 1.09006 * 110.81180 * 343.04280 * 13 12 11 37 37 H 1.09001 * 110.62293 * 277.71772 * 14 13 12 38 38 H 1.08999 * 110.62549 * 154.70354 * 14 13 12 39 39 H 1.08997 * 109.51973 * 311.68038 * 20 18 16 40 40 H 1.09006 * 109.51735 * 71.85050 * 20 18 16 41 41 H 1.08999 * 109.45517 * 189.46214 * 21 20 18 42 42 H 1.08995 * 109.45752 * 309.40796 * 21 20 18 43 43 H 1.08995 * 109.58688 * 69.21938 * 22 21 20 44 44 H 1.09009 * 109.58219 * 189.49458 * 22 21 20 45 45 H 1.07996 * 125.87634 * 180.02562 * 25 24 23 46 46 H 1.08003 * 126.10292 * 180.02562 * 26 25 24 47 47 H 1.09002 * 110.04466 * 265.86933 * 28 15 14 48 48 H 1.09004 * 110.09375 * 144.42161 * 28 15 14 49 49 H 1.09001 * 110.38865 * 321.42709 * 29 9 7 50 50 H 1.08991 * 110.38899 * 83.80710 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1387 -2.5319 0.0005 11 6 -0.4527 -4.0452 -0.0245 12 6 0.8482 -4.6536 -0.5724 13 6 1.0308 -6.1021 -0.1069 14 6 0.5961 -6.9131 -1.3575 15 7 1.0880 -6.0916 -2.4893 16 6 1.6300 -6.5377 -3.6399 17 8 1.9085 -5.7541 -4.5227 18 6 1.8898 -8.0099 -3.8295 19 1 1.1986 -8.5873 -3.2156 20 6 3.3346 -8.3365 -3.4293 21 6 3.6782 -9.7539 -3.8964 22 6 3.7658 -9.7829 -5.4260 23 7 2.5563 -9.1672 -5.9800 24 7 2.0659 -9.2765 -7.2831 25 6 0.9615 -8.5760 -7.3632 26 6 0.7167 -7.9982 -6.1111 27 6 1.7097 -8.3755 -5.2820 28 6 0.8641 -4.6832 -2.0982 29 6 1.9357 -3.7333 -0.0016 30 1 -0.4851 0.8400 0.0004 31 1 -0.5588 -2.0515 -0.8831 32 1 -0.5544 -2.0820 0.9022 33 1 -0.6580 -4.4137 0.9806 34 1 -1.2884 -4.2551 -0.6921 35 1 2.0737 -6.3009 0.1401 36 1 0.3822 -6.3210 0.7413 37 1 -0.4891 -7.0081 -1.3953 38 1 1.0689 -7.8951 -1.3617 39 1 4.0125 -7.6239 -3.8991 40 1 3.4349 -8.2758 -2.3456 41 1 4.6365 -10.0537 -3.4722 42 1 2.9026 -10.4438 -3.5639 43 1 4.6427 -9.2240 -5.7524 44 1 3.8422 -10.8151 -5.7681 45 1 0.3461 -8.4633 -8.2434 46 1 -0.1189 -7.3635 -5.8556 47 1 -0.0921 -4.3346 -2.4886 48 1 1.6722 -4.0566 -2.4757 49 1 2.8195 -3.7489 -0.6394 50 1 2.1937 -4.0340 1.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041421443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:17 Heat of formation + Delta-G solvation = 77.752456 kcal Electronic energy + Delta-G solvation = -31048.704576 eV Core-core repulsion = 27078.259536 eV Total energy + Delta-G solvation = -3970.445040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80993 -40.19780 -38.51167 -36.59715 -35.70554 -33.05708 -32.49834 -30.56007 -30.53693 -29.13667 -28.71840 -28.10012 -26.13201 -24.87672 -23.88412 -22.60701 -22.46936 -21.31787 -20.25595 -19.82288 -18.95934 -18.75831 -17.30307 -17.05445 -16.61349 -15.85331 -15.69207 -15.24032 -14.83957 -14.71290 -14.59261 -14.36150 -14.15550 -13.93204 -13.60176 -13.56366 -13.23365 -12.92102 -12.84700 -12.63941 -12.24773 -12.09920 -11.95319 -11.79221 -11.54393 -11.47672 -11.42113 -11.38930 -11.28907 -10.88556 -10.80074 -10.76251 -10.20238 -10.04618 -9.99113 -9.82831 -9.72928 -9.62177 -9.31543 -8.63533 -8.61733 -8.56904 -6.82684 -5.70550 -3.03871 1.70412 2.24857 2.59078 2.72274 3.01342 3.41024 3.46858 3.49004 3.97207 4.12784 4.22685 4.28606 4.49697 4.53505 4.64796 4.75962 4.79731 4.85483 4.91935 4.93860 5.13487 5.20340 5.25354 5.26229 5.33907 5.39402 5.45832 5.52145 5.54429 5.65334 5.68715 5.78689 5.81602 5.90576 5.99129 6.04163 6.13486 6.17063 6.31748 6.33236 6.48474 6.52688 6.56711 6.71700 6.80067 6.82686 7.56356 7.57053 7.60623 7.61461 7.83143 8.16712 8.26006 9.22824 9.82832 10.48145 11.41169 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002566 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.786191 B =10908.700255 C =11271.669570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.177 3.823 11 C -0.132 4.132 12 C -0.085 4.085 13 C -0.118 4.118 14 C 0.097 3.903 15 N -0.619 5.619 16 C 0.540 3.460 17 O -0.524 6.524 18 C -0.041 4.041 19 H 0.111 0.889 20 C -0.116 4.116 21 C -0.132 4.132 22 C 0.131 3.869 23 N -0.368 5.368 24 N -0.295 5.295 25 C 0.045 3.955 26 C -0.247 4.247 27 C 0.101 3.899 28 C 0.132 3.868 29 C 0.150 3.850 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.184 0.816 46 H 0.144 0.856 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.038 0.962 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.137 -24.042 -4.321 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.170 4.170 12 C -0.087 4.087 13 C -0.157 4.157 14 C -0.026 4.026 15 N -0.353 5.353 16 C 0.326 3.674 17 O -0.399 6.399 18 C -0.064 4.064 19 H 0.129 0.871 20 C -0.154 4.154 21 C -0.171 4.171 22 C 0.010 3.990 23 N -0.152 5.152 24 N -0.116 5.116 25 C -0.140 4.140 26 C -0.276 4.276 27 C -0.026 4.026 28 C 0.011 3.989 29 C 0.024 3.976 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.200 0.800 46 H 0.162 0.838 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.056 0.944 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.248 -24.226 -5.509 25.056 hybrid contribution -0.260 1.529 0.456 1.617 sum 2.988 -22.697 -5.053 23.444 Atomic orbital electron populations 1.69966 1.04845 1.24883 1.57231 1.24784 0.95717 0.97634 1.02278 0.86062 0.78741 0.83859 0.77216 1.20540 1.21750 1.21797 1.19086 0.90428 0.82408 1.43591 0.90486 1.44576 1.01609 0.99775 1.87229 1.21224 0.84299 0.88117 1.01125 1.22865 0.94869 0.99696 0.99581 1.21630 0.98918 0.94391 0.93745 1.22577 1.02138 0.94293 0.96681 1.22691 0.99437 0.94629 0.85818 1.49014 1.60555 1.09112 1.16663 1.19602 0.77519 0.89370 0.80921 1.90772 1.51419 1.57173 1.40502 1.20037 0.99988 0.94805 0.91562 0.87144 1.21637 0.93853 0.97108 1.02819 1.21946 1.04202 0.97573 0.93344 1.21790 0.84520 0.99222 0.93469 1.48587 1.20308 1.38858 1.07480 1.77246 1.13383 1.24742 0.96268 1.23882 0.94966 0.96568 0.98615 1.21025 1.03365 1.09630 0.93610 1.20224 0.92509 0.96022 0.93868 1.21895 1.02468 0.80891 0.93686 1.21406 0.93510 0.85859 0.96818 0.93837 0.93574 0.93922 0.91980 0.92001 0.90746 0.89806 0.90649 0.90601 0.90150 0.89374 0.88369 0.90303 0.89828 0.88890 0.79953 0.83794 0.91277 0.89968 0.94384 0.96049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.95 10.31 55.49 0.57 -26.38 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 3 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 8 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.61 -15.03 3.41 -170.49 -0.58 -15.61 16 10 C 0.18 4.13 5.34 -2.87 -0.02 4.12 16 11 C -0.13 -2.22 5.84 -25.53 -0.15 -2.37 16 12 C -0.09 -1.33 0.74 -153.97 -0.11 -1.44 16 13 C -0.12 -1.29 6.19 -25.41 -0.16 -1.45 16 14 C 0.10 0.92 6.77 -1.88 -0.01 0.90 16 15 N -0.62 -8.25 3.31 -169.97 -0.56 -8.81 16 16 C 0.54 7.69 6.64 -10.99 -0.07 7.62 16 17 O -0.52 -9.94 16.46 5.55 0.09 -9.85 16 18 C -0.04 -0.42 2.44 -92.62 -0.23 -0.65 16 19 H 0.11 0.87 6.66 -51.93 -0.35 0.52 16 20 C -0.12 -0.93 5.28 -26.43 -0.14 -1.07 16 21 C -0.13 -0.74 5.93 -26.53 -0.16 -0.90 16 22 C 0.13 1.03 7.28 -3.87 -0.03 1.00 16 23 N -0.37 -4.43 4.04 -56.95 -0.23 -4.65 16 24 N -0.30 -3.99 12.62 30.69 0.39 -3.60 16 25 C 0.05 0.55 12.03 -17.21 -0.21 0.35 16 26 C -0.25 -3.24 9.94 -40.13 -0.40 -3.64 16 27 C 0.10 1.26 5.74 -82.22 -0.47 0.79 16 28 C 0.13 2.18 6.26 -3.48 -0.02 2.16 16 29 C 0.15 2.95 6.03 -3.13 -0.02 2.93 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 32 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 33 H 0.06 0.96 7.73 -51.93 -0.40 0.55 16 34 H 0.06 0.95 7.69 -51.93 -0.40 0.56 16 35 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 36 H 0.08 0.80 7.59 -51.93 -0.39 0.41 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.50 6.77 -51.93 -0.35 0.14 16 39 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 45 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.14 1.83 8.06 -52.48 -0.42 1.41 16 47 H 0.07 1.20 7.48 -51.93 -0.39 0.81 16 48 H 0.08 1.63 7.50 -51.93 -0.39 1.24 16 49 H 0.04 0.76 7.76 -51.93 -0.40 0.36 16 50 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 LS Contribution 388.44 15.07 5.85 5.85 Total: -1.00 -35.47 388.44 -9.96 -45.43 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.02 Total: -1.19 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -2.44 Total: 1.57 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -0.41 Total: -59.06 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.47 -9.96 -45.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041421443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.179 kcal (2) G-P(sol) polarization free energy of solvation -35.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds