Wall clock time and date at job start Wed Apr 1 2020 02:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99835 * 2 1 4 4 H 1.48498 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47331 * 300.00522 * 3 2 1 6 6 H 1.48501 * 109.47269 * 60.00360 * 3 2 1 7 7 C 1.38808 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99840 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00485 * 359.97438 * 7 2 1 10 10 C 1.47134 * 125.60447 * 359.97438 * 9 7 2 11 11 C 1.54576 * 107.32895 * 179.04628 * 10 9 7 12 12 C 1.53716 * 102.78671 * 339.11513 * 11 10 9 13 13 C 1.53234 * 111.51397 * 153.95607 * 12 11 10 14 14 C 1.55265 * 102.45587 * 101.28536 * 13 12 11 15 15 N 1.48245 * 103.44759 * 36.20736 * 14 13 12 16 16 C 1.34779 * 126.99824 * 141.50373 * 15 14 13 17 17 O 1.21287 * 119.99528 * 175.00572 * 16 15 14 18 18 C 1.50694 * 120.00518 * 355.01357 * 16 15 14 19 19 H 1.09000 * 109.71536 * 26.55674 * 18 16 15 20 20 C 1.53440 * 109.72012 * 265.94172 * 18 16 15 21 21 C 1.53149 * 109.19091 * 191.76319 * 20 18 16 22 22 C 1.53238 * 109.55520 * 69.43982 * 21 20 18 23 23 N 1.46589 * 108.79617 * 309.41973 * 22 21 20 24 24 N 1.39658 * 127.55264 * 197.34599 * 23 22 21 25 25 C 1.31022 * 108.13112 * 179.87145 * 24 23 22 26 26 C 1.40061 * 108.25438 * 0.04457 * 25 24 23 27 27 C 1.34754 * 107.79870 * 0.02562 * 26 25 24 28 28 C 1.47881 * 105.99694 * 321.54788 * 15 14 13 29 29 C 1.47705 * 125.60800 * 179.97438 * 9 7 2 30 30 H 0.96999 * 120.00503 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.87148 * 59.60253 * 10 9 7 32 32 H 1.09003 * 109.86879 * 298.47810 * 10 9 7 33 33 H 1.08999 * 110.75147 * 97.44217 * 11 10 9 34 34 H 1.08999 * 110.74617 * 220.79259 * 11 10 9 35 35 H 1.08998 * 110.81474 * 219.52162 * 13 12 11 36 36 H 1.09006 * 110.81180 * 343.04280 * 13 12 11 37 37 H 1.09001 * 110.62293 * 277.71772 * 14 13 12 38 38 H 1.08999 * 110.62549 * 154.70354 * 14 13 12 39 39 H 1.08997 * 109.51973 * 311.68038 * 20 18 16 40 40 H 1.09006 * 109.51735 * 71.85050 * 20 18 16 41 41 H 1.08999 * 109.45517 * 189.46214 * 21 20 18 42 42 H 1.08995 * 109.45752 * 309.40796 * 21 20 18 43 43 H 1.08995 * 109.58688 * 69.21938 * 22 21 20 44 44 H 1.09009 * 109.58219 * 189.49458 * 22 21 20 45 45 H 1.07996 * 125.87634 * 180.02562 * 25 24 23 46 46 H 1.08003 * 126.10292 * 180.02562 * 26 25 24 47 47 H 1.09002 * 110.04466 * 265.86933 * 28 15 14 48 48 H 1.09004 * 110.09375 * 144.42161 * 28 15 14 49 49 H 1.09001 * 110.38865 * 321.42709 * 29 9 7 50 50 H 1.08991 * 110.38899 * 83.80710 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1387 -2.5319 0.0005 11 6 -0.4527 -4.0452 -0.0245 12 6 0.8482 -4.6536 -0.5724 13 6 1.0308 -6.1021 -0.1069 14 6 0.5961 -6.9131 -1.3575 15 7 1.0880 -6.0916 -2.4893 16 6 1.6300 -6.5377 -3.6399 17 8 1.9085 -5.7541 -4.5227 18 6 1.8898 -8.0099 -3.8295 19 1 1.1986 -8.5873 -3.2156 20 6 3.3346 -8.3365 -3.4293 21 6 3.6782 -9.7539 -3.8964 22 6 3.7658 -9.7829 -5.4260 23 7 2.5563 -9.1672 -5.9800 24 7 2.0659 -9.2765 -7.2831 25 6 0.9615 -8.5760 -7.3632 26 6 0.7167 -7.9982 -6.1111 27 6 1.7097 -8.3755 -5.2820 28 6 0.8641 -4.6832 -2.0982 29 6 1.9357 -3.7333 -0.0016 30 1 -0.4851 0.8400 0.0004 31 1 -0.5588 -2.0515 -0.8831 32 1 -0.5544 -2.0820 0.9022 33 1 -0.6580 -4.4137 0.9806 34 1 -1.2884 -4.2551 -0.6921 35 1 2.0737 -6.3009 0.1401 36 1 0.3822 -6.3210 0.7413 37 1 -0.4891 -7.0081 -1.3953 38 1 1.0689 -7.8951 -1.3617 39 1 4.0125 -7.6239 -3.8991 40 1 3.4349 -8.2758 -2.3456 41 1 4.6365 -10.0537 -3.4722 42 1 2.9026 -10.4438 -3.5639 43 1 4.6427 -9.2240 -5.7524 44 1 3.8422 -10.8151 -5.7681 45 1 0.3461 -8.4633 -8.2434 46 1 -0.1189 -7.3635 -5.8556 47 1 -0.0921 -4.3346 -2.4886 48 1 1.6722 -4.0566 -2.4757 49 1 2.8195 -3.7489 -0.6394 50 1 2.1937 -4.0340 1.0137 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041421443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:16 Heat of formation + Delta-G solvation = 54.123940 kcal Electronic energy + Delta-G solvation = -31049.729186 eV Core-core repulsion = 27078.259536 eV Total energy + Delta-G solvation = -3971.469649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.68488 -41.36612 -39.79552 -37.33510 -37.17887 -34.54486 -33.66735 -32.06321 -31.31731 -30.61842 -29.86673 -29.21503 -27.52639 -26.27137 -25.08556 -23.62123 -23.27983 -22.22218 -22.10941 -20.75074 -20.18792 -19.68535 -18.83933 -18.22338 -17.78253 -16.83956 -16.72774 -16.67470 -16.18079 -15.83044 -15.58745 -15.55476 -15.35979 -15.03011 -14.71902 -14.60112 -14.39969 -14.34460 -13.82575 -13.73139 -13.42200 -13.25745 -13.10449 -12.98719 -12.91041 -12.80544 -12.59475 -12.54437 -12.41294 -12.10805 -12.02565 -12.00029 -11.85447 -11.63926 -11.53129 -11.38064 -11.16273 -10.90380 -10.70739 -10.20778 -9.74015 -9.53439 -8.87623 -7.85763 -5.20027 0.79009 1.39568 1.42564 1.44118 1.53728 1.60633 1.78221 2.01121 2.47925 3.21759 3.31630 3.42034 3.50847 3.56397 3.63854 3.68408 3.74959 3.86280 3.95792 4.08137 4.12890 4.27564 4.30023 4.35647 4.48652 4.51002 4.61338 4.67046 4.67595 4.69847 4.74352 4.78737 4.85452 4.87578 4.92895 4.94898 4.99411 5.06737 5.11535 5.13679 5.17419 5.21792 5.38264 5.43260 5.46946 5.66936 5.71969 5.80698 6.02830 6.20673 6.54244 6.69725 7.08479 7.11220 7.78827 8.42061 9.24351 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002566 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.786191 B =10908.700255 C =11271.669570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.296 1.296 6 H -0.289 1.289 7 C -0.239 4.239 8 H 0.077 0.923 9 N -0.629 5.629 10 C 0.183 3.817 11 C -0.113 4.113 12 C -0.072 4.072 13 C -0.108 4.108 14 C 0.095 3.905 15 N -0.615 5.615 16 C 0.536 3.464 17 O -0.585 6.585 18 C -0.031 4.031 19 H 0.149 0.851 20 C -0.116 4.116 21 C -0.119 4.119 22 C 0.115 3.885 23 N -0.370 5.370 24 N -0.325 5.325 25 C 0.038 3.962 26 C -0.276 4.276 27 C 0.095 3.905 28 C 0.137 3.863 29 C 0.146 3.854 30 H 0.245 0.755 31 H 0.001 0.999 32 H 0.007 0.993 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.122 0.878 39 H 0.051 0.949 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.206 0.794 46 H 0.138 0.862 47 H 0.053 0.947 48 H 0.036 0.964 49 H 0.026 0.974 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -28.063 -2.410 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.802 3.198 4 H -0.192 1.192 5 H -0.223 1.223 6 H -0.216 1.216 7 C -0.368 4.368 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.058 3.942 11 C -0.151 4.151 12 C -0.074 4.074 13 C -0.146 4.146 14 C -0.025 4.025 15 N -0.348 5.348 16 C 0.324 3.676 17 O -0.465 6.465 18 C -0.053 4.053 19 H 0.167 0.833 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.004 4.004 23 N -0.154 5.154 24 N -0.146 5.146 25 C -0.146 4.146 26 C -0.305 4.305 27 C -0.034 4.034 28 C 0.014 3.986 29 C 0.021 3.979 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.025 0.975 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.131 0.869 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.070 0.930 40 H 0.135 0.865 41 H 0.148 0.852 42 H 0.115 0.885 43 H 0.099 0.901 44 H 0.128 0.872 45 H 0.223 0.777 46 H 0.156 0.844 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.016 -28.320 -3.565 28.825 hybrid contribution -0.443 2.826 -0.177 2.866 sum 3.573 -25.494 -3.742 26.014 Atomic orbital electron populations 1.70190 1.06137 1.25014 1.58547 1.25597 0.96622 1.00856 1.02904 0.85078 0.78198 0.79805 0.76701 1.19164 1.22302 1.21550 1.19448 0.90836 0.84028 1.42508 0.90466 1.44896 1.02570 1.01071 1.86963 1.20994 0.83458 0.92492 0.97293 1.22728 0.96094 0.94489 1.01823 1.21489 0.96251 0.97058 0.92621 1.22616 1.03895 0.89896 0.98207 1.23060 1.00976 0.95599 0.82879 1.49069 1.59993 1.08109 1.17606 1.20394 0.76212 0.90825 0.80135 1.90746 1.53906 1.59129 1.42697 1.20148 1.02611 0.91690 0.90857 0.83347 1.21723 0.91306 0.97994 1.04349 1.21975 1.06545 0.96079 0.91121 1.22238 0.82948 0.99817 0.95408 1.48956 1.20926 1.38632 1.06875 1.77173 1.14025 1.25807 0.97619 1.24303 0.94970 0.96029 0.99310 1.21204 1.04171 1.10547 0.94561 1.20577 0.92200 0.95630 0.94993 1.21573 0.99795 0.82727 0.94546 1.21626 0.94327 0.84344 0.97579 0.94527 0.98040 0.97493 0.89129 0.90250 0.89433 0.86931 0.88842 0.86031 0.92970 0.86539 0.85173 0.88487 0.90108 0.87193 0.77741 0.84400 0.92909 0.94559 0.95537 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 10.31 21.65 0.22 -58.04 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.97 47.20 29.55 68.60 2.03 49.22 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.24 -13.70 10.28 84.03 0.86 -12.83 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 9 N -0.63 -32.21 3.41 -693.31 -2.36 -34.57 16 10 C 0.18 8.86 5.34 86.79 0.46 9.33 16 11 C -0.11 -3.65 5.84 31.37 0.18 -3.47 16 12 C -0.07 -2.13 0.74 -51.83 -0.04 -2.17 16 13 C -0.11 -1.80 6.19 31.45 0.19 -1.60 16 14 C 0.10 1.29 6.77 86.82 0.59 1.87 16 15 N -0.61 -15.17 3.31 -810.06 -2.68 -17.85 16 16 C 0.54 14.78 6.64 87.65 0.58 15.37 16 17 O -0.59 -23.21 16.46 -3.05 -0.05 -23.26 16 18 C -0.03 -0.54 2.44 -12.09 -0.03 -0.57 16 19 H 0.15 1.50 6.66 -2.39 -0.02 1.48 16 20 C -0.12 -1.44 5.28 30.79 0.16 -1.27 16 21 C -0.12 -0.79 5.93 30.72 0.18 -0.61 16 22 C 0.12 1.53 7.28 86.44 0.63 2.16 16 23 N -0.37 -8.42 4.04 -334.10 -1.35 -9.77 16 24 N -0.32 -8.67 12.62 -56.80 -0.72 -9.39 16 25 C 0.04 0.95 12.03 85.26 1.03 1.98 16 26 C -0.28 -7.27 9.94 21.91 0.22 -7.06 16 27 C 0.09 2.25 5.74 41.28 0.24 2.48 16 28 C 0.14 4.57 6.26 85.99 0.54 5.10 16 29 C 0.15 5.67 6.03 86.31 0.52 6.19 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.00 0.07 7.38 -2.39 -0.02 0.06 16 32 H 0.01 0.37 7.50 -2.39 -0.02 0.36 16 33 H 0.09 2.46 7.73 -2.39 -0.02 2.44 16 34 H 0.08 2.31 7.69 -2.39 -0.02 2.29 16 35 H 0.09 1.32 7.93 -2.39 -0.02 1.30 16 36 H 0.11 1.37 7.59 -2.38 -0.02 1.35 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.12 0.64 6.77 -2.39 -0.02 0.62 16 39 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 40 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.10 0.39 8.12 -2.39 -0.02 0.37 16 43 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.11 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.21 3.66 8.06 -2.91 -0.02 3.64 16 46 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 47 H 0.05 1.91 7.48 -2.39 -0.02 1.89 16 48 H 0.04 1.53 7.50 -2.38 -0.02 1.51 16 49 H 0.03 1.08 7.76 -2.39 -0.02 1.06 16 50 H 0.04 1.39 8.04 -2.39 -0.02 1.37 16 Total: -1.00 -86.87 388.44 2.81 -84.06 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.93 Total: 8.15 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 6.79 Total: 11.45 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -6.89 Total: -129.63 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.05 Total: -23.26 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.22 kcal Total: -86.87 2.81 -84.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041421443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.188 kcal (2) G-P(sol) polarization free energy of solvation -86.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds