Wall clock time and date at job start Wed Apr 1 2020 02:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48496 * 109.46930 * 85.00132 * 3 2 1 5 5 H 1.48501 * 109.47141 * 325.00049 * 3 2 1 6 6 H 1.48496 * 109.46877 * 205.00227 * 3 2 1 7 7 C 1.38811 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00385 * 188.74140 * 7 2 1 9 9 N 1.36945 * 119.99792 * 8.74667 * 7 2 1 10 10 C 1.47537 * 125.67313 * 10.41771 * 9 7 2 11 11 C 1.55382 * 104.85398 * 155.98732 * 10 9 7 12 12 C 1.53902 * 101.34496 * 36.07279 * 11 10 9 13 13 C 1.53387 * 111.14664 * 205.18616 * 12 11 10 14 14 C 1.55222 * 102.51289 * 217.39961 * 13 12 11 15 15 N 1.48231 * 103.42853 * 36.32499 * 14 13 12 16 16 C 1.34780 * 127.01171 * 141.48088 * 15 14 13 17 17 O 1.21278 * 119.99629 * 174.92511 * 16 15 14 18 18 C 1.50697 * 119.99867 * 354.92495 * 16 15 14 19 19 H 1.09004 * 109.71746 * 335.04320 * 18 16 15 20 20 C 1.53437 * 109.72396 * 95.70879 * 18 16 15 21 21 C 1.53129 * 109.20101 * 168.21504 * 20 18 16 22 22 C 1.53243 * 109.56568 * 290.57738 * 21 20 18 23 23 N 1.46582 * 108.79886 * 50.56121 * 22 21 20 24 24 N 1.39655 * 127.54769 * 162.66887 * 23 22 21 25 25 C 1.31025 * 108.12950 * 180.13224 * 24 23 22 26 26 C 1.40060 * 108.25552 * 359.96280 * 25 24 23 27 27 C 1.34755 * 107.79487 * 359.97438 * 26 25 24 28 28 C 1.47839 * 105.97986 * 321.44113 * 15 14 13 29 29 C 1.47334 * 125.66805 * 190.71395 * 9 7 2 30 30 H 0.96993 * 119.99935 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.33634 * 274.96925 * 10 9 7 32 32 H 1.09007 * 110.33888 * 37.21383 * 10 9 7 33 33 H 1.08999 * 111.24804 * 278.00282 * 11 10 9 34 34 H 1.08996 * 110.91569 * 154.00831 * 11 10 9 35 35 H 1.09006 * 110.79445 * 335.65292 * 13 12 11 36 36 H 1.08990 * 110.79840 * 99.13940 * 13 12 11 37 37 H 1.08997 * 110.63007 * 277.83414 * 14 13 12 38 38 H 1.09002 * 110.76274 * 154.87361 * 14 13 12 39 39 H 1.08997 * 109.51280 * 288.14105 * 20 18 16 40 40 H 1.08999 * 109.51302 * 48.30535 * 20 18 16 41 41 H 1.08997 * 109.45813 * 170.54436 * 21 20 18 42 42 H 1.09000 * 109.43023 * 50.59196 * 21 20 18 43 43 H 1.08999 * 109.58354 * 290.76833 * 22 21 20 44 44 H 1.08993 * 109.58230 * 170.36070 * 22 21 20 45 45 H 1.07993 * 125.87591 * 180.02562 * 25 24 23 46 46 H 1.07997 * 126.10338 * 179.97438 * 26 25 24 47 47 H 1.09000 * 110.03767 * 265.92827 * 28 15 14 48 48 H 1.08997 * 110.03986 * 144.48911 * 28 15 14 49 49 H 1.08996 * 109.97587 * 301.30940 * 29 9 7 50 50 H 1.09003 * 109.96820 * 62.53971 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 1.3947 5 1 1.5045 2.6199 -0.8030 6 1 3.5965 1.4119 -0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0809 -1.2076 0.1427 9 7 1.3375 -2.3813 -0.1793 10 6 -0.0716 -2.5129 -0.5964 11 6 -0.1668 -3.9248 -1.2380 12 6 0.7976 -4.7279 -0.3472 13 6 1.3611 -5.9423 -1.0960 14 6 1.4189 -7.0251 0.0147 15 7 0.2107 -6.7489 0.8279 16 6 -0.6101 -7.6550 1.3952 17 8 -1.5148 -7.2872 2.1142 18 6 -0.4035 -9.1251 1.1360 19 1 0.1116 -9.2620 0.1851 20 6 0.4283 -9.7389 2.2698 21 6 0.3846 -11.2654 2.1569 22 6 -1.0231 -11.7652 2.4990 23 7 -1.9985 -11.0046 1.7123 24 7 -3.3304 -11.3372 1.4562 25 6 -3.8506 -10.3928 0.7117 26 6 -2.8632 -9.4288 0.4724 27 6 -1.7381 -9.8276 1.0979 28 6 0.0902 -5.2767 0.8907 29 6 1.8987 -3.7293 0.0175 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7309 -2.4416 0.2687 32 1 -0.3229 -1.7463 -1.3295 33 1 0.1754 -3.9124 -2.2728 34 1 -1.1816 -4.3164 -1.1680 35 1 0.6902 -6.2471 -1.8992 36 1 2.3579 -5.7304 -1.4823 37 1 2.3209 -6.9108 0.6158 38 1 1.3707 -8.0247 -0.4173 39 1 1.4603 -9.3972 2.1904 40 1 0.0155 -9.4330 3.2310 41 1 1.1032 -11.7015 2.8508 42 1 0.6374 -11.5611 1.1387 43 1 -1.2154 -11.6167 3.5615 44 1 -1.1039 -12.8245 2.2556 45 1 -4.8664 -10.3623 0.3464 46 1 -2.9821 -8.5268 -0.1095 47 1 0.5718 -4.9008 1.7934 48 1 -0.9606 -4.9872 0.8794 49 1 2.7613 -3.8721 -0.6332 50 1 2.1922 -3.8619 1.0589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041421445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:24 Heat of formation + Delta-G solvation = 77.508203 kcal Electronic energy + Delta-G solvation = -30924.472013 eV Core-core repulsion = 26954.016381 eV Total energy + Delta-G solvation = -3970.455632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.82896 -40.22384 -38.53185 -36.62109 -35.70805 -33.08487 -32.50896 -30.56282 -30.55698 -29.36655 -28.67135 -27.94444 -26.06073 -24.96854 -23.98030 -22.62854 -22.39148 -21.33593 -20.38369 -19.79726 -18.98888 -18.74696 -17.34744 -16.95644 -16.62715 -16.15894 -15.61937 -15.25308 -14.97978 -14.70466 -14.60808 -14.29142 -14.03573 -13.89033 -13.64846 -13.58352 -13.32602 -12.94407 -12.81859 -12.63375 -12.34752 -12.18031 -11.94327 -11.82376 -11.56799 -11.49933 -11.41338 -11.39474 -11.28585 -10.86291 -10.80725 -10.77145 -10.23257 -10.12333 -9.94471 -9.88121 -9.76245 -9.63378 -9.32886 -8.68286 -8.61516 -8.56520 -6.80357 -5.74875 -3.08097 1.68626 2.22368 2.56993 2.70287 2.98250 3.39020 3.44621 3.46676 3.94281 4.08934 4.21836 4.25270 4.47807 4.50393 4.61550 4.75261 4.77596 4.79832 4.91543 4.96073 5.11513 5.17666 5.23304 5.27461 5.32899 5.36700 5.42706 5.49209 5.53335 5.63237 5.65801 5.75948 5.79138 5.90982 6.02474 6.03158 6.08759 6.13722 6.29710 6.34113 6.49827 6.55634 6.60853 6.68747 6.80957 6.81206 7.49284 7.52977 7.58715 7.59204 7.78043 8.12411 8.25318 9.18592 9.80403 10.48206 11.38019 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.002358 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.094835 B =11870.574347 C =12320.434027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.082 4.082 13 C -0.119 4.119 14 C 0.096 3.904 15 N -0.618 5.618 16 C 0.540 3.460 17 O -0.526 6.526 18 C -0.041 4.041 19 H 0.112 0.888 20 C -0.116 4.116 21 C -0.133 4.133 22 C 0.131 3.869 23 N -0.369 5.369 24 N -0.295 5.295 25 C 0.046 3.954 26 C -0.247 4.247 27 C 0.101 3.899 28 C 0.128 3.872 29 C 0.150 3.850 30 H 0.253 0.747 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.184 0.816 46 H 0.145 0.855 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.028 0.972 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -24.727 -0.315 24.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.048 3.952 11 C -0.172 4.172 12 C -0.084 4.084 13 C -0.157 4.157 14 C -0.027 4.027 15 N -0.352 5.352 16 C 0.327 3.673 17 O -0.401 6.401 18 C -0.064 4.064 19 H 0.130 0.870 20 C -0.154 4.154 21 C -0.171 4.171 22 C 0.010 3.990 23 N -0.153 5.153 24 N -0.116 5.116 25 C -0.140 4.140 26 C -0.276 4.276 27 C -0.027 4.027 28 C 0.006 3.994 29 C 0.024 3.976 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.116 0.884 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.111 0.889 45 H 0.201 0.799 46 H 0.163 0.837 47 H 0.089 0.911 48 H 0.098 0.902 49 H 0.046 0.954 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.192 -25.577 0.832 25.619 hybrid contribution 0.544 1.765 -0.352 1.880 sum 1.736 -23.813 0.480 23.881 Atomic orbital electron populations 1.69952 1.04958 1.25199 1.56268 1.24833 0.95620 0.97817 1.02067 0.86137 0.78717 0.83612 0.77499 1.21644 1.21632 1.20621 1.18999 0.90932 0.82714 1.43215 0.90686 1.44599 1.09225 0.99717 1.79402 1.21521 0.85677 0.90958 0.97052 1.23011 0.97046 0.98831 0.98289 1.21556 0.97321 0.94779 0.94720 1.22656 1.02160 0.94049 0.96834 1.22722 0.87818 0.99373 0.92766 1.48997 1.26894 1.07364 1.51959 1.19599 0.81407 0.86308 0.80018 1.90760 1.32000 1.80679 1.36672 1.20047 0.92457 0.91956 1.01978 0.87040 1.21636 1.00714 0.94789 0.98287 1.21945 0.95326 0.95839 1.03986 1.21790 0.85698 0.96194 0.95293 1.48585 1.08864 1.17097 1.40717 1.77250 0.89451 1.24221 1.20702 1.23890 1.00278 0.92366 0.97442 1.21043 0.92578 1.03585 1.10412 1.20208 0.96174 0.88782 0.97486 1.22050 1.01962 0.77413 0.97966 1.21270 0.93192 0.85663 0.97438 0.93681 0.95461 0.91360 0.91736 0.92065 0.90677 0.89633 0.90545 0.90535 0.89443 0.90186 0.88389 0.90274 0.89839 0.88886 0.79922 0.83736 0.91065 0.90248 0.95419 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.67 55.49 0.59 -26.19 16 2 C -0.01 -0.18 5.41 -17.43 -0.09 -0.28 16 3 Si 0.91 21.86 29.56 -169.99 -5.03 16.84 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.30 10.24 -15.06 -0.15 -6.46 16 8 H 0.08 1.99 7.84 -52.49 -0.41 1.57 16 9 N -0.60 -14.92 3.41 -170.20 -0.58 -15.50 16 10 C 0.17 4.07 5.36 -2.21 -0.01 4.06 16 11 C -0.13 -2.36 5.83 -25.00 -0.15 -2.50 16 12 C -0.08 -1.30 0.73 -153.92 -0.11 -1.41 16 13 C -0.12 -1.35 6.20 -25.35 -0.16 -1.50 16 14 C 0.10 0.92 6.98 -1.91 -0.01 0.90 16 15 N -0.62 -8.04 3.31 -169.95 -0.56 -8.60 16 16 C 0.54 7.45 6.61 -10.99 -0.07 7.38 16 17 O -0.53 -9.62 16.54 5.56 0.09 -9.53 16 18 C -0.04 -0.42 2.56 -92.61 -0.24 -0.65 16 19 H 0.11 0.87 6.37 -51.93 -0.33 0.53 16 20 C -0.12 -0.87 5.28 -26.44 -0.14 -1.01 16 21 C -0.13 -0.69 5.93 -26.54 -0.16 -0.85 16 22 C 0.13 0.99 7.28 -3.87 -0.03 0.96 16 23 N -0.37 -4.33 4.04 -56.96 -0.23 -4.56 16 24 N -0.30 -3.93 12.62 30.69 0.39 -3.54 16 25 C 0.05 0.55 12.03 -17.21 -0.21 0.35 16 26 C -0.25 -3.21 9.99 -40.13 -0.40 -3.61 16 27 C 0.10 1.23 5.74 -82.22 -0.47 0.76 16 28 C 0.13 2.04 6.22 -3.42 -0.02 2.02 16 29 C 0.15 2.90 6.48 -3.56 -0.02 2.88 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 32 H 0.07 1.80 6.95 -51.92 -0.36 1.44 16 33 H 0.06 1.09 8.06 -51.93 -0.42 0.68 16 34 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 35 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 36 H 0.09 0.90 7.39 -51.93 -0.38 0.52 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.51 6.39 -51.93 -0.33 0.18 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.08 0.37 8.12 -51.93 -0.42 -0.05 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.18 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 47 H 0.07 1.24 7.30 -51.93 -0.38 0.86 16 48 H 0.08 1.42 7.45 -51.93 -0.39 1.04 16 49 H 0.03 0.52 7.39 -51.93 -0.38 0.13 16 50 H 0.02 0.44 7.36 -51.93 -0.38 0.06 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -35.16 387.86 -9.86 -45.02 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.93 Total: -0.81 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.45 Total: 1.03 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.39 Total: -58.39 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.16 -9.86 -45.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041421445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.532 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds