Wall clock time and date at job start Wed Apr 1 2020 02:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99941 * 2 1 4 4 H 1.48496 * 109.46930 * 85.00132 * 3 2 1 5 5 H 1.48501 * 109.47141 * 325.00049 * 3 2 1 6 6 H 1.48496 * 109.46877 * 205.00227 * 3 2 1 7 7 C 1.38811 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00385 * 188.74140 * 7 2 1 9 9 N 1.36945 * 119.99792 * 8.74667 * 7 2 1 10 10 C 1.47537 * 125.67313 * 10.41771 * 9 7 2 11 11 C 1.55382 * 104.85398 * 155.98732 * 10 9 7 12 12 C 1.53902 * 101.34496 * 36.07279 * 11 10 9 13 13 C 1.53387 * 111.14664 * 205.18616 * 12 11 10 14 14 C 1.55222 * 102.51289 * 217.39961 * 13 12 11 15 15 N 1.48231 * 103.42853 * 36.32499 * 14 13 12 16 16 C 1.34780 * 127.01171 * 141.48088 * 15 14 13 17 17 O 1.21278 * 119.99629 * 174.92511 * 16 15 14 18 18 C 1.50697 * 119.99867 * 354.92495 * 16 15 14 19 19 H 1.09004 * 109.71746 * 335.04320 * 18 16 15 20 20 C 1.53437 * 109.72396 * 95.70879 * 18 16 15 21 21 C 1.53129 * 109.20101 * 168.21504 * 20 18 16 22 22 C 1.53243 * 109.56568 * 290.57738 * 21 20 18 23 23 N 1.46582 * 108.79886 * 50.56121 * 22 21 20 24 24 N 1.39655 * 127.54769 * 162.66887 * 23 22 21 25 25 C 1.31025 * 108.12950 * 180.13224 * 24 23 22 26 26 C 1.40060 * 108.25552 * 359.96280 * 25 24 23 27 27 C 1.34755 * 107.79487 * 359.97438 * 26 25 24 28 28 C 1.47839 * 105.97986 * 321.44113 * 15 14 13 29 29 C 1.47334 * 125.66805 * 190.71395 * 9 7 2 30 30 H 0.96993 * 119.99935 * 0.02562 * 1 2 3 31 31 H 1.09007 * 110.33634 * 274.96925 * 10 9 7 32 32 H 1.09007 * 110.33888 * 37.21383 * 10 9 7 33 33 H 1.08999 * 111.24804 * 278.00282 * 11 10 9 34 34 H 1.08996 * 110.91569 * 154.00831 * 11 10 9 35 35 H 1.09006 * 110.79445 * 335.65292 * 13 12 11 36 36 H 1.08990 * 110.79840 * 99.13940 * 13 12 11 37 37 H 1.08997 * 110.63007 * 277.83414 * 14 13 12 38 38 H 1.09002 * 110.76274 * 154.87361 * 14 13 12 39 39 H 1.08997 * 109.51280 * 288.14105 * 20 18 16 40 40 H 1.08999 * 109.51302 * 48.30535 * 20 18 16 41 41 H 1.08997 * 109.45813 * 170.54436 * 21 20 18 42 42 H 1.09000 * 109.43023 * 50.59196 * 21 20 18 43 43 H 1.08999 * 109.58354 * 290.76833 * 22 21 20 44 44 H 1.08993 * 109.58230 * 170.36070 * 22 21 20 45 45 H 1.07993 * 125.87591 * 180.02562 * 25 24 23 46 46 H 1.07997 * 126.10338 * 179.97438 * 26 25 24 47 47 H 1.09000 * 110.03767 * 265.92827 * 28 15 14 48 48 H 1.08997 * 110.03986 * 144.48911 * 28 15 14 49 49 H 1.08996 * 109.97587 * 301.30940 * 29 9 7 50 50 H 1.09003 * 109.96820 * 62.53971 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 1.3947 5 1 1.5045 2.6199 -0.8030 6 1 3.5965 1.4119 -0.5917 7 6 2.0103 -1.2021 0.0005 8 1 3.0809 -1.2076 0.1427 9 7 1.3375 -2.3813 -0.1793 10 6 -0.0716 -2.5129 -0.5964 11 6 -0.1668 -3.9248 -1.2380 12 6 0.7976 -4.7279 -0.3472 13 6 1.3611 -5.9423 -1.0960 14 6 1.4189 -7.0251 0.0147 15 7 0.2107 -6.7489 0.8279 16 6 -0.6101 -7.6550 1.3952 17 8 -1.5148 -7.2872 2.1142 18 6 -0.4035 -9.1251 1.1360 19 1 0.1116 -9.2620 0.1851 20 6 0.4283 -9.7389 2.2698 21 6 0.3846 -11.2654 2.1569 22 6 -1.0231 -11.7652 2.4990 23 7 -1.9985 -11.0046 1.7123 24 7 -3.3304 -11.3372 1.4562 25 6 -3.8506 -10.3928 0.7117 26 6 -2.8632 -9.4288 0.4724 27 6 -1.7381 -9.8276 1.0979 28 6 0.0902 -5.2767 0.8907 29 6 1.8987 -3.7293 0.0175 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7309 -2.4416 0.2687 32 1 -0.3229 -1.7463 -1.3295 33 1 0.1754 -3.9124 -2.2728 34 1 -1.1816 -4.3164 -1.1680 35 1 0.6902 -6.2471 -1.8992 36 1 2.3579 -5.7304 -1.4823 37 1 2.3209 -6.9108 0.6158 38 1 1.3707 -8.0247 -0.4173 39 1 1.4603 -9.3972 2.1904 40 1 0.0155 -9.4330 3.2310 41 1 1.1032 -11.7015 2.8508 42 1 0.6374 -11.5611 1.1387 43 1 -1.2154 -11.6167 3.5615 44 1 -1.1039 -12.8245 2.2556 45 1 -4.8664 -10.3623 0.3464 46 1 -2.9821 -8.5268 -0.1095 47 1 0.5718 -4.9008 1.7934 48 1 -0.9606 -4.9872 0.8794 49 1 2.7613 -3.8721 -0.6332 50 1 2.1922 -3.8619 1.0589 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041421445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:22 Heat of formation + Delta-G solvation = 54.498802 kcal Electronic energy + Delta-G solvation = -30925.469775 eV Core-core repulsion = 26954.016381 eV Total energy + Delta-G solvation = -3971.453394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.68376 -41.38058 -39.79966 -37.33454 -37.16895 -34.54274 -33.66606 -32.04474 -31.31468 -30.84239 -29.74978 -29.12256 -27.45354 -26.36349 -25.08276 -23.62817 -23.27264 -22.27302 -22.14459 -20.72451 -20.18404 -19.68451 -18.81380 -18.20230 -17.74612 -17.19734 -16.73578 -16.49208 -16.24439 -15.81875 -15.64225 -15.45417 -15.26817 -14.94305 -14.79295 -14.56177 -14.43008 -14.18819 -13.96176 -13.67474 -13.47338 -13.42390 -13.19365 -12.98277 -12.85379 -12.75460 -12.60111 -12.52842 -12.37352 -12.10408 -12.02012 -11.99423 -11.80928 -11.64325 -11.58457 -11.34678 -11.27621 -10.91267 -10.65749 -10.19803 -9.75660 -9.52654 -8.83442 -7.86642 -5.21554 0.79027 1.38292 1.46368 1.47557 1.57350 1.62876 1.77708 2.00025 2.50513 3.20390 3.31461 3.42978 3.50610 3.58416 3.61905 3.63134 3.74148 3.85900 3.95095 4.08143 4.11513 4.23935 4.29417 4.32823 4.46755 4.51154 4.59787 4.65254 4.66459 4.68903 4.75409 4.78378 4.84293 4.86995 4.91861 4.94312 5.00607 5.05043 5.10319 5.14112 5.17551 5.21292 5.34493 5.44994 5.47790 5.60886 5.67269 5.74268 6.03362 6.21626 6.52667 6.70099 7.07192 7.09001 7.78131 8.45024 9.25399 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024662 B = 0.002358 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.094835 B =11870.574347 C =12320.434027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.264 1.264 7 C -0.239 4.239 8 H 0.083 0.917 9 N -0.626 5.626 10 C 0.178 3.822 11 C -0.116 4.116 12 C -0.071 4.071 13 C -0.110 4.110 14 C 0.096 3.904 15 N -0.614 5.614 16 C 0.538 3.462 17 O -0.583 6.583 18 C -0.032 4.032 19 H 0.147 0.853 20 C -0.115 4.115 21 C -0.120 4.120 22 C 0.116 3.884 23 N -0.370 5.370 24 N -0.324 5.324 25 C 0.038 3.962 26 C -0.276 4.276 27 C 0.095 3.905 28 C 0.132 3.868 29 C 0.147 3.853 30 H 0.246 0.754 31 H -0.014 1.014 32 H 0.030 0.970 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.054 0.946 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.205 0.795 46 H 0.138 0.862 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.050 0.950 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -27.859 -1.486 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.101 0.899 9 N -0.352 5.352 10 C 0.053 3.947 11 C -0.155 4.155 12 C -0.072 4.072 13 C -0.148 4.148 14 C -0.025 4.025 15 N -0.346 5.346 16 C 0.326 3.674 17 O -0.463 6.463 18 C -0.054 4.054 19 H 0.165 0.835 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.004 4.004 23 N -0.154 5.154 24 N -0.146 5.146 25 C -0.146 4.146 26 C -0.306 4.306 27 C -0.033 4.033 28 C 0.009 3.991 29 C 0.023 3.977 30 H 0.055 0.945 31 H 0.004 0.996 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.134 0.866 40 H 0.073 0.927 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.127 0.873 45 H 0.222 0.778 46 H 0.156 0.844 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.067 0.933 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.561 -28.771 -0.352 29.132 hybrid contribution -0.499 2.749 0.091 2.795 sum 4.062 -26.022 -0.261 26.338 Atomic orbital electron populations 1.70180 1.06548 1.25332 1.57994 1.25698 0.96442 1.01290 1.02723 0.85087 0.78018 0.79232 0.77144 1.21707 1.22203 1.18834 1.19439 0.91575 0.84010 1.41821 0.89889 1.44933 1.09569 1.01265 1.79450 1.21258 0.84930 0.93627 0.94867 1.22840 0.98514 0.95119 0.98994 1.21419 0.95562 0.95717 0.94551 1.22678 1.03182 0.91735 0.97250 1.23041 0.86564 1.01014 0.91850 1.49037 1.28010 1.05596 1.52002 1.20344 0.80312 0.87889 0.78814 1.90737 1.34447 1.81819 1.39268 1.20160 0.92049 0.88476 1.04743 0.83516 1.21721 1.01392 0.96403 0.95827 1.21974 0.94101 0.93855 1.05866 1.22244 0.86325 0.96921 0.94894 1.48956 1.08771 1.17242 1.40385 1.77178 0.90733 1.25150 1.21539 1.24298 1.01288 0.91928 0.97085 1.21212 0.93708 1.03909 1.11725 1.20557 0.96964 0.89015 0.96796 1.21729 0.99849 0.80056 0.97460 1.21494 0.94797 0.83870 0.97568 0.94484 0.99565 0.95113 0.90042 0.91165 0.89199 0.87644 0.88792 0.86124 0.86573 0.92694 0.85138 0.88669 0.89943 0.87296 0.77795 0.84422 0.93168 0.93337 0.93261 0.96478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 10.67 21.65 0.23 -58.17 16 2 C -0.07 -3.92 5.41 84.86 0.46 -3.47 16 3 Si 0.98 45.84 29.56 68.60 2.03 47.87 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.24 -13.29 10.24 84.03 0.86 -12.43 16 8 H 0.08 4.36 7.84 -2.91 -0.02 4.34 16 9 N -0.63 -31.58 3.41 -692.39 -2.36 -33.94 16 10 C 0.18 8.84 5.36 87.00 0.47 9.31 16 11 C -0.12 -4.09 5.83 31.72 0.18 -3.91 16 12 C -0.07 -2.13 0.73 -51.80 -0.04 -2.17 16 13 C -0.11 -2.00 6.20 31.49 0.20 -1.80 16 14 C 0.10 1.34 6.98 86.81 0.61 1.95 16 15 N -0.61 -14.71 3.31 -809.99 -2.68 -17.39 16 16 C 0.54 14.22 6.61 87.66 0.58 14.80 16 17 O -0.58 -22.07 16.54 -3.02 -0.05 -22.12 16 18 C -0.03 -0.54 2.56 -12.09 -0.03 -0.58 16 19 H 0.15 1.46 6.37 -2.38 -0.02 1.44 16 20 C -0.12 -1.31 5.28 30.78 0.16 -1.15 16 21 C -0.12 -0.72 5.93 30.72 0.18 -0.53 16 22 C 0.12 1.45 7.28 86.45 0.63 2.08 16 23 N -0.37 -8.18 4.04 -334.11 -1.35 -9.53 16 24 N -0.32 -8.51 12.62 -56.80 -0.72 -9.23 16 25 C 0.04 0.94 12.03 85.26 1.03 1.97 16 26 C -0.28 -7.19 9.99 21.91 0.22 -6.98 16 27 C 0.10 2.21 5.74 41.28 0.24 2.44 16 28 C 0.13 4.27 6.22 86.05 0.53 4.80 16 29 C 0.15 5.54 6.48 86.24 0.56 6.10 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H -0.01 -0.77 8.06 -2.38 -0.02 -0.79 16 32 H 0.03 1.72 6.95 -2.38 -0.02 1.70 16 33 H 0.08 2.62 8.06 -2.39 -0.02 2.60 16 34 H 0.07 2.35 7.71 -2.39 -0.02 2.33 16 35 H 0.09 1.46 7.90 -2.38 -0.02 1.44 16 36 H 0.11 1.60 7.39 -2.39 -0.02 1.59 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.12 0.72 6.39 -2.39 -0.02 0.71 16 39 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.05 0.93 8.08 -2.39 -0.02 0.91 16 41 H 0.13 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.09 0.35 8.12 -2.39 -0.02 0.33 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 46 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 47 H 0.05 1.81 7.30 -2.39 -0.02 1.79 16 48 H 0.05 1.85 7.45 -2.39 -0.02 1.83 16 49 H 0.05 1.67 7.39 -2.39 -0.02 1.66 16 50 H 0.02 0.67 7.36 -2.39 -0.02 0.65 16 Total: -1.00 -84.44 387.86 2.87 -81.57 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.93 Total: 10.52 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.83 Total: 10.42 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.87 Total: -128.26 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -84.44 2.87 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041421445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.067 kcal (2) G-P(sol) polarization free energy of solvation -84.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds