Wall clock time and date at job start Wed Apr 1 2020 02:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00380 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99979 * 3 2 1 5 5 H 1.48500 * 109.47093 * 30.00307 * 3 2 1 6 6 H 1.48503 * 109.47239 * 149.99454 * 3 2 1 7 7 C 1.38813 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.47435 * 126.05908 * 359.97438 * 9 7 2 11 11 C 1.54498 * 107.14496 * 181.62664 * 10 9 7 12 12 C 1.56021 * 102.61569 * 22.85055 * 11 10 9 13 13 H 1.09006 * 113.50881 * 202.63439 * 12 11 10 14 14 C 1.53085 * 106.39834 * 78.37617 * 12 11 10 15 15 C 1.52835 * 110.58311 * 195.44015 * 14 12 11 16 16 N 1.47151 * 107.98037 * 57.34065 * 15 14 12 17 17 C 1.34783 * 121.21700 * 122.71078 * 16 15 14 18 18 O 1.21623 * 119.99752 * 184.83589 * 17 16 15 19 19 C 1.47159 * 119.99977 * 4.83856 * 17 16 15 20 20 C 1.38407 * 126.88609 * 78.13586 * 19 17 16 21 21 C 1.39679 * 105.36135 * 179.73683 * 20 19 17 22 22 N 1.30866 * 107.85749 * 0.02562 * 21 20 19 23 23 N 1.28444 * 110.93134 * 0.02562 * 22 21 20 24 24 C 1.46496 * 125.19002 * 180.02562 * 23 22 21 25 25 C 1.53784 * 113.61544 * 42.84850 * 24 23 22 26 26 C 1.53786 * 87.08083 * 220.01734 * 25 24 23 27 27 C 1.53780 * 113.61570 * 305.35118 * 24 23 22 28 28 C 1.46751 * 117.56482 * 302.98626 * 16 15 14 29 29 C 1.46468 * 126.05874 * 180.02562 * 9 7 2 30 30 H 1.09005 * 108.41553 * 269.88917 * 29 9 7 31 31 H 0.97005 * 119.99403 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.90051 * 301.00592 * 10 9 7 33 33 H 1.09002 * 109.90209 * 62.06377 * 10 9 7 34 34 H 1.09000 * 110.77781 * 264.56154 * 11 10 9 35 35 H 1.09009 * 110.77752 * 141.12896 * 11 10 9 36 36 H 1.09003 * 109.25436 * 75.15050 * 14 12 11 37 37 H 1.09005 * 109.25615 * 315.72543 * 14 12 11 38 38 H 1.08993 * 109.75951 * 297.71698 * 15 14 12 39 39 H 1.09002 * 109.79748 * 176.98674 * 15 14 12 40 40 H 1.08001 * 127.32270 * 359.70526 * 20 19 17 41 41 H 1.07995 * 126.07071 * 179.97438 * 21 20 19 42 42 H 1.08997 * 112.84998 * 174.15309 * 24 23 22 43 43 H 1.08995 * 113.61171 * 334.56655 * 25 24 23 44 44 H 1.09002 * 113.61795 * 105.47151 * 25 24 23 45 45 H 1.08997 * 113.61333 * 270.88449 * 26 25 24 46 46 H 1.08998 * 113.61078 * 139.97770 * 26 25 24 47 47 H 1.09008 * 113.61178 * 254.53165 * 27 24 23 48 48 H 1.08997 * 113.61445 * 25.34475 * 27 24 23 49 49 H 1.09001 * 109.23144 * 172.58145 * 28 16 15 50 50 H 1.09001 * 109.22573 * 291.93677 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1407 -2.5437 0.0005 11 6 -0.4378 -4.0593 0.0424 12 6 0.8717 -4.6465 0.6544 13 1 1.0292 -5.6986 0.4165 14 6 0.7962 -4.3919 2.1621 15 6 2.1695 -4.5752 2.8074 16 7 3.1093 -3.6579 2.1437 17 6 3.8016 -2.7388 2.8456 18 8 4.5055 -1.9342 2.2655 19 6 3.7058 -2.7088 4.3137 20 6 4.3460 -3.5519 5.2054 21 6 3.9449 -3.1234 6.4729 22 7 3.1334 -2.1089 6.3153 23 7 2.9708 -1.8405 5.0698 24 6 2.1274 -0.7657 4.5409 25 6 2.2592 0.5575 5.3134 26 6 0.7374 0.7111 5.1539 27 6 0.6738 -0.8211 5.0397 28 6 3.2607 -3.7763 0.6888 29 6 1.9198 -3.7268 0.0016 30 1 2.0585 -4.0428 -1.0324 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5653 -2.0579 0.8790 33 1 -0.5603 -2.1054 -0.9049 34 1 -0.6039 -4.4486 -0.9620 35 1 -1.2928 -4.2680 0.6857 36 1 0.0919 -5.0928 2.6102 37 1 0.4496 -3.3734 2.3377 38 1 2.5040 -5.6042 2.6759 39 1 2.1125 -4.3392 3.8700 40 1 5.0135 -4.3679 4.9710 41 1 4.2496 -3.5536 7.4154 42 1 2.2142 -0.6524 3.4603 43 1 2.5791 0.4294 6.3474 44 1 2.8327 1.3176 4.7829 45 1 0.4442 1.2295 4.2410 46 1 0.2427 1.1036 6.0423 47 1 -0.0325 -1.1741 4.2882 48 1 0.5602 -1.3274 5.9982 49 1 3.8801 -2.9566 0.3244 50 1 3.7462 -4.7236 0.4544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042063739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:53 Heat of formation + Delta-G solvation = 103.903257 kcal Electronic energy + Delta-G solvation = -33380.300187 eV Core-core repulsion = 29410.989131 eV Total energy + Delta-G solvation = -3969.311056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38656 -39.84886 -38.31611 -37.96017 -35.03865 -32.89210 -31.65057 -31.43790 -30.71655 -28.97189 -28.43284 -25.63187 -25.41510 -24.77507 -24.29157 -22.58099 -22.18855 -21.61618 -20.05230 -19.86463 -18.94923 -18.41744 -17.49114 -16.63756 -16.31047 -15.53382 -15.36887 -15.27911 -14.90486 -14.61296 -14.33751 -14.06902 -13.98646 -13.67975 -13.43532 -12.94592 -12.82311 -12.74015 -12.53721 -12.46155 -12.16008 -12.03708 -11.67658 -11.45667 -11.30200 -11.10542 -10.96612 -10.84399 -10.77795 -10.73871 -10.51479 -10.28842 -10.14832 -9.92124 -9.91206 -9.72663 -9.58183 -9.54665 -8.88784 -8.74697 -8.58618 -8.22447 -6.81864 -5.69744 -3.01630 1.89916 2.38861 2.84677 3.14843 3.39426 3.39973 3.46942 3.53987 4.43619 4.51727 4.59880 4.62368 4.86010 4.87365 5.04066 5.06704 5.09346 5.28648 5.42550 5.45631 5.51343 5.63947 5.64732 5.69480 5.70811 5.76550 5.77763 5.86043 5.92633 5.95716 5.96585 6.00685 6.04570 6.07243 6.09746 6.21323 6.25380 6.38821 6.42111 6.44456 6.57397 6.67796 6.72166 6.88205 6.98060 7.03457 7.57922 7.59874 7.72983 7.86326 8.24546 8.30454 8.47744 9.24185 9.84376 10.49449 11.42011 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.006492 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.723637 B = 4311.944068 C = 5647.679305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.894 3.106 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.213 4.213 8 H 0.082 0.918 9 N -0.588 5.588 10 C 0.179 3.821 11 C -0.143 4.143 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.121 4.121 15 C 0.113 3.887 16 N -0.579 5.579 17 C 0.591 3.409 18 O -0.518 6.518 19 C -0.009 4.009 20 C -0.210 4.210 21 C -0.005 4.005 22 N -0.288 5.288 23 N -0.250 5.250 24 C 0.118 3.882 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.136 4.136 28 C 0.113 3.887 29 C 0.153 3.847 30 H 0.029 0.971 31 H 0.249 0.751 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.181 0.819 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -9.763 10.054 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.724 3.276 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.313 5.313 10 C 0.055 3.945 11 C -0.181 4.181 12 C -0.120 4.120 13 H 0.095 0.905 14 C -0.159 4.159 15 C -0.010 4.010 16 N -0.311 5.311 17 C 0.375 3.625 18 O -0.392 6.392 19 C -0.139 4.139 20 C -0.239 4.239 21 C -0.181 4.181 22 N -0.119 5.119 23 N -0.037 5.037 24 C 0.018 3.982 25 C -0.177 4.177 26 C -0.173 4.173 27 C -0.174 4.174 28 C -0.010 4.010 29 C 0.045 3.955 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.171 0.829 41 H 0.198 0.802 42 H 0.156 0.844 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.115 0.885 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.947 -8.164 10.255 13.143 hybrid contribution 0.906 0.254 -0.515 1.072 sum 1.853 -7.911 9.740 12.684 Atomic orbital electron populations 1.69961 1.04640 1.24672 1.57862 1.24656 0.95512 0.97181 1.02806 0.86355 0.79236 0.84095 0.77886 1.21674 1.21776 1.20230 1.19055 0.90616 0.81998 1.42437 0.90057 1.44287 1.01382 0.99188 1.86484 1.21206 0.84290 0.88245 1.00807 1.23151 0.96023 0.99706 0.99262 1.22358 0.97179 0.97822 0.94682 0.90533 1.21822 0.95516 1.03214 0.95384 1.21656 0.89602 0.92911 0.96861 1.47694 1.41102 1.34402 1.07941 1.16940 0.80611 0.80854 0.84046 1.90847 1.40231 1.38053 1.70052 1.21672 1.01732 0.96862 0.93592 1.21982 1.06742 1.03434 0.91696 1.23433 0.99737 0.96405 0.98567 1.73003 1.20355 1.18318 1.00213 1.45897 1.32146 1.23352 1.02276 1.23571 0.89966 0.84431 1.00249 1.23315 0.97714 0.95306 1.01357 1.22683 0.95522 0.96031 1.03081 1.23292 0.94381 0.97366 1.02347 1.21407 0.99368 1.01812 0.78442 1.20611 0.91018 0.87988 0.95901 0.95386 0.94047 0.93792 0.94063 0.92688 0.92326 0.91985 0.90294 0.91556 0.90545 0.82908 0.80205 0.84365 0.88522 0.90501 0.89044 0.90436 0.89853 0.89017 0.88478 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 10.38 55.49 0.58 -25.34 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.89 22.37 29.55 -169.99 -5.02 17.35 16 4 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.21 -5.65 9.69 -15.06 -0.15 -5.80 16 8 H 0.08 2.25 6.49 -52.49 -0.34 1.91 16 9 N -0.59 -13.73 3.20 -164.72 -0.53 -14.26 16 10 C 0.18 4.04 4.62 -2.74 -0.01 4.03 16 11 C -0.14 -2.46 6.33 -24.33 -0.15 -2.61 16 12 C -0.10 -1.57 3.68 -88.46 -0.33 -1.90 16 13 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.12 -1.82 5.04 -26.77 -0.13 -1.95 16 15 C 0.11 1.59 6.34 -3.77 -0.02 1.57 16 16 N -0.58 -9.99 2.97 -175.77 -0.52 -10.51 16 17 C 0.59 11.47 6.84 -12.64 -0.09 11.38 16 18 O -0.52 -12.10 16.56 5.26 0.09 -12.01 16 19 C -0.01 -0.15 4.82 -82.06 -0.40 -0.55 16 20 C -0.21 -2.96 10.84 -38.98 -0.42 -3.39 16 21 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 22 N -0.29 -4.46 11.14 30.59 0.34 -4.12 16 23 N -0.25 -4.20 3.46 -49.91 -0.17 -4.37 16 24 C 0.12 2.01 4.53 -67.12 -0.30 1.71 16 25 C -0.14 -2.06 7.75 -25.91 -0.20 -2.26 16 26 C -0.14 -1.86 8.08 -25.92 -0.21 -2.07 16 27 C -0.14 -2.00 7.80 -25.92 -0.20 -2.20 16 28 C 0.11 2.01 5.66 -5.03 -0.03 1.98 16 29 C 0.15 2.89 2.96 -68.57 -0.20 2.69 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.04 1.10 7.04 -51.93 -0.37 0.74 16 33 H 0.04 1.06 7.56 -51.93 -0.39 0.67 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.92 7.97 -51.92 -0.41 0.50 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.47 6.85 -51.93 -0.36 1.11 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.08 6.27 -51.93 -0.33 0.76 16 40 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 41 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.14 2.86 7.56 -51.93 -0.39 2.46 16 43 H 0.10 1.37 7.75 -51.93 -0.40 0.97 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 48 H 0.09 1.28 8.03 -51.93 -0.42 0.86 16 49 H 0.10 2.04 5.49 -51.93 -0.29 1.76 16 50 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -30.95 387.94 -10.45 -41.40 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.90 Total: 5.90 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.15 Total: 0.11 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.31 Total: -58.60 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.01 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.95 -10.45 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042063739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.306 kcal (2) G-P(sol) polarization free energy of solvation -30.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds