Wall clock time and date at job start Wed Apr 1 2020 02:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00380 * 2 1 4 4 H 1.48496 * 109.47196 * 269.99979 * 3 2 1 5 5 H 1.48500 * 109.47093 * 30.00307 * 3 2 1 6 6 H 1.48503 * 109.47239 * 149.99454 * 3 2 1 7 7 C 1.38813 * 119.99664 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00011 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00182 * 0.02562 * 7 2 1 10 10 C 1.47435 * 126.05908 * 359.97438 * 9 7 2 11 11 C 1.54498 * 107.14496 * 181.62664 * 10 9 7 12 12 C 1.56021 * 102.61569 * 22.85055 * 11 10 9 13 13 H 1.09006 * 113.50881 * 202.63439 * 12 11 10 14 14 C 1.53085 * 106.39834 * 78.37617 * 12 11 10 15 15 C 1.52835 * 110.58311 * 195.44015 * 14 12 11 16 16 N 1.47151 * 107.98037 * 57.34065 * 15 14 12 17 17 C 1.34783 * 121.21700 * 122.71078 * 16 15 14 18 18 O 1.21623 * 119.99752 * 184.83589 * 17 16 15 19 19 C 1.47159 * 119.99977 * 4.83856 * 17 16 15 20 20 C 1.38407 * 126.88609 * 78.13586 * 19 17 16 21 21 C 1.39679 * 105.36135 * 179.73683 * 20 19 17 22 22 N 1.30866 * 107.85749 * 0.02562 * 21 20 19 23 23 N 1.28444 * 110.93134 * 0.02562 * 22 21 20 24 24 C 1.46496 * 125.19002 * 180.02562 * 23 22 21 25 25 C 1.53784 * 113.61544 * 42.84850 * 24 23 22 26 26 C 1.53786 * 87.08083 * 220.01734 * 25 24 23 27 27 C 1.53780 * 113.61570 * 305.35118 * 24 23 22 28 28 C 1.46751 * 117.56482 * 302.98626 * 16 15 14 29 29 C 1.46468 * 126.05874 * 180.02562 * 9 7 2 30 30 H 1.09005 * 108.41553 * 269.88917 * 29 9 7 31 31 H 0.97005 * 119.99403 * 0.02562 * 1 2 3 32 32 H 1.08997 * 109.90051 * 301.00592 * 10 9 7 33 33 H 1.09002 * 109.90209 * 62.06377 * 10 9 7 34 34 H 1.09000 * 110.77781 * 264.56154 * 11 10 9 35 35 H 1.09009 * 110.77752 * 141.12896 * 11 10 9 36 36 H 1.09003 * 109.25436 * 75.15050 * 14 12 11 37 37 H 1.09005 * 109.25615 * 315.72543 * 14 12 11 38 38 H 1.08993 * 109.75951 * 297.71698 * 15 14 12 39 39 H 1.09002 * 109.79748 * 176.98674 * 15 14 12 40 40 H 1.08001 * 127.32270 * 359.70526 * 20 19 17 41 41 H 1.07995 * 126.07071 * 179.97438 * 21 20 19 42 42 H 1.08997 * 112.84998 * 174.15309 * 24 23 22 43 43 H 1.08995 * 113.61171 * 334.56655 * 25 24 23 44 44 H 1.09002 * 113.61795 * 105.47151 * 25 24 23 45 45 H 1.08997 * 113.61333 * 270.88449 * 26 25 24 46 46 H 1.08998 * 113.61078 * 139.97770 * 26 25 24 47 47 H 1.09008 * 113.61178 * 254.53165 * 27 24 23 48 48 H 1.08997 * 113.61445 * 25.34475 * 27 24 23 49 49 H 1.09001 * 109.23144 * 172.58145 * 28 16 15 50 50 H 1.09001 * 109.22573 * 291.93677 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1407 -2.5437 0.0005 11 6 -0.4378 -4.0593 0.0424 12 6 0.8717 -4.6465 0.6544 13 1 1.0292 -5.6986 0.4165 14 6 0.7962 -4.3919 2.1621 15 6 2.1695 -4.5752 2.8074 16 7 3.1093 -3.6579 2.1437 17 6 3.8016 -2.7388 2.8456 18 8 4.5055 -1.9342 2.2655 19 6 3.7058 -2.7088 4.3137 20 6 4.3460 -3.5519 5.2054 21 6 3.9449 -3.1234 6.4729 22 7 3.1334 -2.1089 6.3153 23 7 2.9708 -1.8405 5.0698 24 6 2.1274 -0.7657 4.5409 25 6 2.2592 0.5575 5.3134 26 6 0.7374 0.7111 5.1539 27 6 0.6738 -0.8211 5.0397 28 6 3.2607 -3.7763 0.6888 29 6 1.9198 -3.7268 0.0016 30 1 2.0585 -4.0428 -1.0324 31 1 -0.4849 0.8401 -0.0004 32 1 -0.5653 -2.0579 0.8790 33 1 -0.5603 -2.1054 -0.9049 34 1 -0.6039 -4.4486 -0.9620 35 1 -1.2928 -4.2680 0.6857 36 1 0.0919 -5.0928 2.6102 37 1 0.4496 -3.3734 2.3377 38 1 2.5040 -5.6042 2.6759 39 1 2.1125 -4.3392 3.8700 40 1 5.0135 -4.3679 4.9710 41 1 4.2496 -3.5536 7.4154 42 1 2.2142 -0.6524 3.4603 43 1 2.5791 0.4294 6.3474 44 1 2.8327 1.3176 4.7829 45 1 0.4442 1.2295 4.2410 46 1 0.2427 1.1036 6.0423 47 1 -0.0325 -1.1741 4.2882 48 1 0.5602 -1.3274 5.9982 49 1 3.8801 -2.9566 0.3244 50 1 3.7462 -4.7236 0.4544 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042063739.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:52 Heat of formation + Delta-G solvation = 85.461506 kcal Electronic energy + Delta-G solvation = -33381.099881 eV Core-core repulsion = 29410.989131 eV Total energy + Delta-G solvation = -3970.110750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.57635 -41.29458 -39.60064 -39.46061 -36.61236 -34.69085 -33.00433 -32.79189 -32.13295 -30.45079 -30.09871 -26.86264 -26.66832 -26.51247 -25.87694 -23.95108 -23.52321 -22.77916 -21.74597 -21.18212 -20.30540 -19.77005 -18.85112 -18.46691 -17.73305 -16.98562 -16.71795 -16.63863 -16.47504 -16.08709 -15.94912 -15.62974 -15.40428 -14.92847 -14.85588 -14.35936 -14.18085 -14.08886 -13.95229 -13.73596 -13.66839 -13.38221 -13.22493 -13.12598 -13.01910 -12.69750 -12.59705 -12.38613 -12.32050 -12.09081 -11.93567 -11.75488 -11.68586 -11.52470 -11.43296 -11.32430 -11.21654 -11.02840 -10.67749 -10.09578 -9.91548 -9.62720 -8.80097 -7.84095 -5.13104 0.66499 1.05455 1.30815 1.33248 1.43963 1.75861 1.82387 2.06691 2.44759 3.19685 3.31914 3.34528 3.36654 3.58040 3.58924 3.64821 3.84459 3.89022 3.95501 4.08738 4.24624 4.27434 4.42540 4.43982 4.46315 4.55422 4.56311 4.58435 4.63847 4.66516 4.73259 4.77457 4.81155 4.83213 4.86127 4.87501 4.96021 4.97642 5.09918 5.15966 5.23328 5.28599 5.53757 5.57000 5.61388 5.65799 5.72990 5.81484 5.82697 6.22948 6.34703 7.04019 7.15480 7.15683 7.82974 8.46309 9.25985 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.006492 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.723637 B = 4311.944068 C = 5647.679305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.054 4.054 3 Si 0.938 3.062 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.291 1.291 7 C -0.200 4.200 8 H 0.063 0.937 9 N -0.603 5.603 10 C 0.187 3.813 11 C -0.129 4.129 12 C -0.082 4.082 13 H 0.126 0.874 14 C -0.117 4.117 15 C 0.114 3.886 16 N -0.576 5.576 17 C 0.586 3.414 18 O -0.576 6.576 19 C -0.042 4.042 20 C -0.192 4.192 21 C 0.008 3.992 22 N -0.299 5.299 23 N -0.261 5.261 24 C 0.111 3.889 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.121 4.121 28 C 0.114 3.886 29 C 0.141 3.859 30 H 0.033 0.967 31 H 0.242 0.758 32 H 0.008 0.992 33 H -0.001 1.001 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.181 0.819 41 H 0.224 0.776 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.055 0.945 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -13.597 12.498 18.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.247 4.247 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.218 1.218 7 C -0.330 4.330 8 H 0.081 0.919 9 N -0.328 5.328 10 C 0.063 3.937 11 C -0.167 4.167 12 C -0.102 4.102 13 H 0.144 0.856 14 C -0.155 4.155 15 C -0.008 4.008 16 N -0.307 5.307 17 C 0.372 3.628 18 O -0.455 6.455 19 C -0.171 4.171 20 C -0.220 4.220 21 C -0.169 4.169 22 N -0.129 5.129 23 N -0.048 5.048 24 C 0.009 3.991 25 C -0.169 4.169 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.009 4.009 29 C 0.034 3.966 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.026 0.974 33 H 0.017 0.983 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.050 0.950 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.198 0.802 41 H 0.241 0.759 42 H 0.104 0.896 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.082 0.918 48 H 0.127 0.873 49 H 0.073 0.927 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.004 -12.057 12.695 17.537 hybrid contribution 0.965 1.358 -1.281 2.101 sum 1.969 -10.699 11.414 15.768 Atomic orbital electron populations 1.70120 1.05184 1.24326 1.59585 1.25124 0.96153 0.99167 1.04217 0.85664 0.77698 0.82231 0.77514 1.21496 1.21340 1.21750 1.19015 0.89987 0.83689 1.40282 0.91873 1.44439 1.02109 1.00212 1.86037 1.20953 0.83526 0.92210 0.97044 1.23012 0.97813 0.94943 1.00949 1.22412 0.94017 0.99274 0.94450 0.85587 1.21785 0.96846 1.01491 0.95380 1.21911 0.88255 0.94098 0.96521 1.47846 1.40842 1.34228 1.07734 1.17371 0.79986 0.80238 0.85249 1.90805 1.42958 1.40274 1.71462 1.21634 1.03977 0.98765 0.92684 1.22382 1.05470 1.02933 0.91237 1.24171 0.97943 0.94967 0.99824 1.73000 1.21328 1.19343 0.99268 1.45809 1.32743 1.23471 1.02747 1.23306 0.91784 0.86187 0.97817 1.23302 0.98352 0.93756 1.01480 1.22628 0.94927 0.95229 1.03549 1.23205 0.92315 0.98150 1.02224 1.21347 0.98298 1.02328 0.78903 1.20935 0.92561 0.86328 0.96748 0.94969 0.94811 0.97424 0.98286 0.91225 0.90182 0.88200 0.94980 0.87193 0.90439 0.80151 0.75913 0.89556 0.87029 0.91653 0.91041 0.87189 0.91783 0.87285 0.92683 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 10.38 21.65 0.22 -56.20 16 2 C -0.05 -3.13 5.49 84.86 0.47 -2.67 16 3 Si 0.94 49.17 29.55 68.60 2.03 51.20 16 4 H -0.29 -14.84 7.11 99.48 0.71 -14.14 16 5 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 6 H -0.29 -15.77 7.11 99.48 0.71 -15.07 16 7 C -0.20 -11.34 9.69 84.03 0.81 -10.53 16 8 H 0.06 3.78 6.49 -2.91 -0.02 3.76 16 9 N -0.60 -29.38 3.20 -675.06 -2.16 -31.53 16 10 C 0.19 8.81 4.62 86.71 0.40 9.21 16 11 C -0.13 -4.18 6.33 32.15 0.20 -3.97 16 12 C -0.08 -2.28 3.68 -9.39 -0.03 -2.31 16 13 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 14 C -0.12 -3.17 5.04 30.57 0.15 -3.01 16 15 C 0.11 2.84 6.34 86.20 0.55 3.39 16 16 N -0.58 -19.51 2.97 -828.25 -2.46 -21.98 16 17 C 0.59 23.40 6.84 86.58 0.59 23.99 16 18 O -0.58 -28.82 16.56 -4.10 -0.07 -28.89 16 19 C -0.04 -1.42 4.82 40.79 0.20 -1.22 16 20 C -0.19 -4.85 10.84 22.66 0.25 -4.60 16 21 C 0.01 0.17 12.03 85.18 1.03 1.20 16 22 N -0.30 -8.64 11.14 -57.14 -0.64 -9.27 16 23 N -0.26 -8.76 3.46 -311.82 -1.08 -9.84 16 24 C 0.11 3.97 4.53 45.52 0.21 4.17 16 25 C -0.13 -3.99 7.75 31.12 0.24 -3.75 16 26 C -0.13 -3.51 8.08 31.12 0.25 -3.25 16 27 C -0.12 -3.65 7.80 31.12 0.24 -3.41 16 28 C 0.11 4.03 5.66 85.60 0.48 4.51 16 29 C 0.14 5.21 2.96 44.60 0.13 5.34 16 30 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.24 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.01 0.40 7.04 -2.39 -0.02 0.39 16 33 H 0.00 -0.06 7.56 -2.39 -0.02 -0.08 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.28 7.97 -2.38 -0.02 2.26 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.18 6.85 -2.38 -0.02 1.17 16 38 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.08 1.98 6.27 -2.39 -0.01 1.96 16 40 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 41 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.09 3.99 7.56 -2.39 -0.02 3.98 16 43 H 0.11 3.06 7.75 -2.39 -0.02 3.05 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 47 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 48 H 0.11 2.91 8.03 -2.39 -0.02 2.89 16 49 H 0.05 2.43 5.49 -2.39 -0.01 2.41 16 50 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -76.80 387.94 2.95 -73.85 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.94 Total: 19.57 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.17 Total: 13.09 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -6.11 Total: -128.82 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.07 Total: -28.89 kcal Atomic # 14 Polarization: 49.17 SS G_CDS: 2.03 Total: 51.20 kcal Total: -76.80 2.95 -73.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042063739.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.315 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds