Wall clock time and date at job start Wed Apr 1 2020 02:52:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86804 * 119.99947 * 2 1
4 4 H 1.48502 * 109.46585 * 179.97438 * 3 2 1
5 5 H 1.48491 * 109.47111 * 300.00089 * 3 2 1
6 6 H 1.48499 * 109.47287 * 60.00442 * 3 2 1
7 7 C 1.38811 * 119.99985 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00036 * 180.02562 * 7 2 1
9 9 N 1.36940 * 119.99918 * 359.97438 * 7 2 1
10 10 C 1.47435 * 126.05914 * 359.97438 * 9 7 2
11 11 C 1.54496 * 107.14725 * 178.39087 * 10 9 7
12 12 C 1.56026 * 102.61532 * 337.14932 * 11 10 9
13 13 H 1.08998 * 112.85990 * 157.06279 * 12 11 10
14 14 C 1.53086 * 106.39889 * 281.62291 * 12 11 10
15 15 C 1.52347 * 110.64746 * 164.45083 * 14 12 11
16 16 N 1.47153 * 108.24094 * 302.87508 * 15 14 12
17 17 C 1.34781 * 121.20989 * 237.24960 * 16 15 14
18 18 O 1.21625 * 119.99714 * 186.46679 * 17 16 15
19 19 C 1.47164 * 120.00103 * 6.46336 * 17 16 15
20 20 C 1.38408 * 126.88333 * 24.35216 * 19 17 16
21 21 C 1.39668 * 105.35689 * 180.02562 * 20 19 17
22 22 N 1.30866 * 107.86635 * 359.74583 * 21 20 19
23 23 N 1.28444 * 110.92222 * 0.43481 * 22 21 20
24 24 C 1.46497 * 125.18931 * 179.81946 * 23 22 21
25 25 C 1.53779 * 113.68870 * 328.48606 * 24 23 22
26 26 C 1.53786 * 87.08141 * 89.13085 * 25 24 23
27 27 C 1.53780 * 113.61548 * 66.02323 * 24 23 22
28 28 C 1.46755 * 117.57513 * 56.97311 * 16 15 14
29 29 C 1.46467 * 126.05909 * 179.97438 * 9 7 2
30 30 H 1.09001 * 108.41759 * 90.75101 * 29 9 7
31 31 H 0.97003 * 119.99875 * 359.97438 * 1 2 3
32 32 H 1.09002 * 109.89869 * 297.76879 * 10 9 7
33 33 H 1.08993 * 109.90893 * 59.00764 * 10 9 7
34 34 H 1.09003 * 110.78291 * 95.43440 * 11 10 9
35 35 H 1.09003 * 110.77943 * 218.87574 * 11 10 9
36 36 H 1.09001 * 109.25517 * 284.86071 * 14 12 11
37 37 H 1.09005 * 109.25907 * 44.33387 * 14 12 11
38 38 H 1.09002 * 109.65460 * 183.15733 * 15 14 12
39 39 H 1.08996 * 109.60340 * 62.55876 * 15 14 12
40 40 H 1.07997 * 127.32055 * 0.05670 * 20 19 17
41 41 H 1.08003 * 126.06411 * 180.02562 * 21 20 19
42 42 H 1.08998 * 112.85025 * 197.21898 * 24 23 22
43 43 H 1.09001 * 113.61202 * 203.67467 * 25 24 23
44 44 H 1.08991 * 113.61996 * 334.58023 * 25 24 23
45 45 H 1.08998 * 113.61031 * 270.88404 * 26 25 24
46 46 H 1.08994 * 113.61909 * 139.98257 * 26 25 24
47 47 H 1.09002 * 113.61458 * 25.34970 * 27 24 23
48 48 H 1.08995 * 113.61766 * 156.25200 * 27 24 23
49 49 H 1.09000 * 109.21924 * 68.08415 * 28 16 15
50 50 H 1.09000 * 109.22591 * 187.48057 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8914 2.3964 -1.2124
6 1 1.8916 2.3965 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 -0.1406 -2.5437 0.0005
11 6 -0.4378 -4.0592 -0.0414
12 6 0.8713 -4.6464 -0.6544
13 1 1.0210 -5.6971 -0.4060
14 6 0.7947 -4.3916 -2.1620
15 6 2.1629 -4.5712 -2.8074
16 7 3.1081 -3.6582 -2.1452
17 6 3.8002 -2.7395 -2.8477
18 8 4.6602 -2.0765 -2.2999
19 6 3.5154 -2.5387 -4.2775
20 6 2.3323 -2.8236 -4.9368
21 6 2.5543 -2.4626 -6.2676
22 7 3.7748 -1.9994 -6.3597
23 7 4.3659 -2.0344 -5.2199
24 6 5.7405 -1.5948 -4.9679
25 6 6.6825 -1.7939 -6.1669
26 6 6.2619 -0.3891 -6.6302
27 6 5.9480 -0.0828 -5.1563
28 6 3.2649 -3.7803 -0.6911
29 6 1.9199 -3.7267 -0.0016
30 1 2.0480 -4.0475 1.0323
31 1 -0.4850 0.8401 0.0004
32 1 -0.5592 -2.1084 0.9079
33 1 -0.5660 -2.0577 -0.8774
34 1 -0.6032 -4.4488 0.9631
35 1 -1.2932 -4.2679 -0.6840
36 1 0.0899 -5.0923 -2.6097
37 1 0.4489 -3.3728 -2.3373
38 1 2.1018 -4.3319 -3.8691
39 1 2.4950 -5.6015 -2.6797
40 1 1.4292 -3.2367 -4.5124
41 1 1.8432 -2.5462 -7.0762
42 1 6.1417 -1.9770 -4.0292
43 1 7.7340 -1.8653 -5.8889
44 1 6.3674 -2.5890 -6.8425
45 1 5.3820 -0.3868 -7.2736
46 1 7.0839 0.2021 -7.0336
47 1 5.0398 0.5034 -5.0159
48 1 6.7986 0.3136 -4.6020
49 1 3.7489 -4.7295 -0.4609
50 1 3.8871 -2.9627 -0.3273
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001042063743.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:52:00
Heat of formation + Delta-G solvation = 121.502989 kcal
Electronic energy + Delta-G solvation = -32653.344570 eV
Core-core repulsion = 28684.796696 eV
Total energy + Delta-G solvation = -3968.547874 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.56462 -39.86371 -38.45487 -37.95409 -35.14708 -32.85657 -31.74212 -31.44647
-30.60517 -28.95037 -28.36348 -25.82675 -25.66801 -24.81137 -24.25980 -22.66045
-22.11053 -21.63147 -20.76647 -19.95655 -18.72460 -18.14530 -17.12201 -16.54704
-16.24244 -15.93951 -15.50552 -15.26974 -14.95045 -14.68580 -14.44612 -14.30705
-13.88215 -13.82537 -13.61089 -13.10671 -12.98709 -12.68671 -12.57295 -12.35280
-12.25712 -11.99882 -11.64707 -11.41444 -11.25785 -11.02707 -10.91597 -10.81024
-10.72320 -10.69007 -10.61781 -10.38484 -10.08902 -9.86895 -9.85599 -9.66904
-9.53727 -9.48507 -9.00627 -8.73490 -8.53907 -8.17099 -6.76874 -5.65029
-2.96803 1.52609 2.42686 2.74417 3.36472 3.45209 3.50940 3.52160
3.56883 4.20343 4.44905 4.56528 4.64473 4.72598 4.76983 5.01428
5.09265 5.11796 5.26751 5.33963 5.46063 5.49836 5.52431 5.56283
5.60829 5.69970 5.71164 5.76134 5.78681 5.83657 5.87303 5.90452
5.93358 5.96967 6.06788 6.13378 6.19759 6.24716 6.29571 6.42226
6.47922 6.60036 6.62913 6.72512 6.92671 6.94469 7.05032 7.63060
7.64162 7.76359 7.90344 8.20559 8.29968 8.50995 9.28644 9.89567
10.53946 11.47259
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010834 B = 0.004908 C = 0.003947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2583.719638 B = 5703.544361 C = 7092.000076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C -0.006 4.006
3 Si 0.902 3.098
4 H -0.278 1.278
5 H -0.293 1.293
6 H -0.292 1.292
7 C -0.214 4.214
8 H 0.080 0.920
9 N -0.589 5.589
10 C 0.178 3.822
11 C -0.144 4.144
12 C -0.101 4.101
13 H 0.076 0.924
14 C -0.124 4.124
15 C 0.078 3.922
16 N -0.576 5.576
17 C 0.596 3.404
18 O -0.537 6.537
19 C -0.014 4.014
20 C -0.200 4.200
21 C -0.006 4.006
22 N -0.282 5.282
23 N -0.243 5.243
24 C 0.118 3.882
25 C -0.137 4.137
26 C -0.137 4.137
27 C -0.142 4.142
28 C 0.117 3.883
29 C 0.153 3.847
30 H 0.028 0.972
31 H 0.249 0.751
32 H 0.040 0.960
33 H 0.045 0.955
34 H 0.054 0.946
35 H 0.059 0.941
36 H 0.063 0.937
37 H 0.082 0.918
38 H 0.107 0.893
39 H 0.063 0.937
40 H 0.172 0.828
41 H 0.184 0.816
42 H 0.127 0.873
43 H 0.097 0.903
44 H 0.078 0.922
45 H 0.094 0.906
46 H 0.068 0.932
47 H 0.075 0.925
48 H 0.100 0.900
49 H 0.058 0.942
50 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.425 -10.688 -11.229 16.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.202 4.202
3 Si 0.733 3.267
4 H -0.203 1.203
5 H -0.220 1.220
6 H -0.219 1.219
7 C -0.342 4.342
8 H 0.098 0.902
9 N -0.314 5.314
10 C 0.054 3.946
11 C -0.182 4.182
12 C -0.121 4.121
13 H 0.094 0.906
14 C -0.162 4.162
15 C -0.044 4.044
16 N -0.307 5.307
17 C 0.383 3.617
18 O -0.414 6.414
19 C -0.143 4.143
20 C -0.228 4.228
21 C -0.182 4.182
22 N -0.113 5.113
23 N -0.030 5.030
24 C 0.016 3.984
25 C -0.175 4.175
26 C -0.175 4.175
27 C -0.180 4.180
28 C -0.006 4.006
29 C 0.045 3.955
30 H 0.045 0.955
31 H 0.059 0.941
32 H 0.059 0.941
33 H 0.064 0.936
34 H 0.072 0.928
35 H 0.078 0.922
36 H 0.082 0.918
37 H 0.100 0.900
38 H 0.125 0.875
39 H 0.082 0.918
40 H 0.189 0.811
41 H 0.201 0.799
42 H 0.144 0.856
43 H 0.116 0.884
44 H 0.097 0.903
45 H 0.112 0.888
46 H 0.087 0.913
47 H 0.094 0.906
48 H 0.119 0.881
49 H 0.076 0.924
50 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 7.773 -9.592 -11.638 16.967
hybrid contribution -0.533 0.673 0.703 1.110
sum 7.240 -8.919 -10.935 15.860
Atomic orbital electron populations
1.69961 1.04741 1.24636 1.57816 1.24687 0.95573 0.97378 1.02582
0.86160 0.79265 0.84272 0.77010 1.20288 1.22021 1.21923 1.19042
0.90509 0.82051 1.42596 0.90190 1.44291 1.01438 0.99191 1.86479
1.21217 0.84258 0.88309 1.00840 1.23170 0.96118 0.99694 0.99242
1.22374 0.97167 0.97772 0.94813 0.90589 1.21748 0.95650 1.03413
0.95397 1.22352 0.89684 0.93005 0.99386 1.47439 1.41579 1.33707
1.08011 1.16731 0.81590 0.79738 0.83673 1.90771 1.33058 1.46762
1.70842 1.21525 0.92834 1.07445 0.92453 1.22494 0.98502 1.07836
0.93983 1.23561 0.93817 1.03360 0.97489 1.73065 1.09639 1.20741
1.07882 1.45298 1.11166 1.42733 1.03795 1.22568 0.76981 0.97862
1.00961 1.23190 0.98786 0.99125 0.96435 1.22962 1.02067 0.95816
0.96637 1.23257 1.03160 0.94283 0.97284 1.21459 0.99180 1.01711
0.78277 1.20711 0.91031 0.87953 0.95848 0.95456 0.94071 0.94132
0.93649 0.92754 0.92238 0.91802 0.89988 0.87530 0.91849 0.81143
0.79898 0.85558 0.88446 0.90318 0.88771 0.91280 0.90598 0.88149
0.92412 0.88597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.34 10.38 55.49 0.58 -26.77 16
2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16
3 Si 0.90 23.49 29.55 -169.99 -5.02 18.46 16
4 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16
5 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16
6 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16
7 C -0.21 -5.93 9.70 -15.06 -0.15 -6.08 16
8 H 0.08 2.28 6.51 -52.49 -0.34 1.94 16
9 N -0.59 -14.31 3.20 -164.44 -0.53 -14.83 16
10 C 0.18 4.17 4.61 -2.75 -0.01 4.15 16
11 C -0.14 -2.52 6.33 -24.33 -0.15 -2.67 16
12 C -0.10 -1.61 3.68 -88.44 -0.33 -1.93 16
13 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16
14 C -0.12 -1.82 4.73 -27.02 -0.13 -1.95 16
15 C 0.08 1.07 5.79 -4.02 -0.02 1.05 16
16 N -0.58 -10.07 2.98 -175.77 -0.52 -10.59 16
17 C 0.60 11.58 7.54 -12.63 -0.10 11.48 16
18 O -0.54 -11.91 14.66 5.26 0.08 -11.83 16
19 C -0.01 -0.24 6.59 -82.06 -0.54 -0.78 16
20 C -0.20 -2.98 8.77 -38.98 -0.34 -3.32 16
21 C -0.01 -0.08 12.03 -17.43 -0.21 -0.29 16
22 N -0.28 -4.24 10.13 30.59 0.31 -3.93 16
23 N -0.24 -3.88 3.48 -49.91 -0.17 -4.06 16
24 C 0.12 1.67 4.35 -67.12 -0.29 1.38 16
25 C -0.14 -1.48 7.56 -25.92 -0.20 -1.68 16
26 C -0.14 -1.52 7.69 -25.92 -0.20 -1.72 16
27 C -0.14 -1.86 7.88 -25.92 -0.20 -2.07 16
28 C 0.12 2.13 5.67 -4.79 -0.03 2.10 16
29 C 0.15 2.97 2.96 -68.31 -0.20 2.76 16
30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
32 H 0.04 1.07 7.57 -51.93 -0.39 0.68 16
33 H 0.05 1.19 7.04 -51.93 -0.37 0.82 16
34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16
35 H 0.06 0.94 7.97 -51.93 -0.41 0.52 16
36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
37 H 0.08 1.51 6.84 -51.93 -0.36 1.16 16
38 H 0.11 1.36 3.28 -51.93 -0.17 1.19 16
39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.17 2.29 5.75 -52.49 -0.30 1.99 16
41 H 0.18 1.80 8.06 -52.48 -0.42 1.38 16
42 H 0.13 1.91 6.58 -51.93 -0.34 1.56 16
43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16
44 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16
45 H 0.09 1.17 7.20 -51.93 -0.37 0.79 16
46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
47 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
48 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16
49 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16
50 H 0.10 2.05 5.58 -51.93 -0.29 1.76 16
LS Contribution 377.27 15.07 5.69 5.69
Total: -1.00 -33.13 377.27 -10.34 -43.48
By element:
Atomic # 1 Polarization: 11.78 SS G_CDS: -7.55 Total: 4.23 kcal
Atomic # 6 Polarization: 3.34 SS G_CDS: -3.19 Total: 0.15 kcal
Atomic # 7 Polarization: -59.84 SS G_CDS: -0.34 Total: -60.18 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal
Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -33.13 -10.34 -43.48 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042063743.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 164.981 kcal
(2) G-P(sol) polarization free energy of solvation -33.134 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal
(6) G-S(sol) free energy of system = (1) + (5) 121.503 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds