Wall clock time and date at job start Wed Apr 1 2020 02:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86804 * 119.99947 * 2 1
4 4 H 1.48502 * 109.46585 * 179.97438 * 3 2 1
5 5 H 1.48491 * 109.47111 * 300.00089 * 3 2 1
6 6 H 1.48499 * 109.47287 * 60.00442 * 3 2 1
7 7 C 1.38811 * 119.99985 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00036 * 180.02562 * 7 2 1
9 9 N 1.36940 * 119.99918 * 359.97438 * 7 2 1
10 10 C 1.47435 * 126.05914 * 359.97438 * 9 7 2
11 11 C 1.54496 * 107.14725 * 178.39087 * 10 9 7
12 12 C 1.56026 * 102.61532 * 337.14932 * 11 10 9
13 13 H 1.08998 * 112.85990 * 157.06279 * 12 11 10
14 14 C 1.53086 * 106.39889 * 281.62291 * 12 11 10
15 15 C 1.52347 * 110.64746 * 164.45083 * 14 12 11
16 16 N 1.47153 * 108.24094 * 302.87508 * 15 14 12
17 17 C 1.34781 * 121.20989 * 237.24960 * 16 15 14
18 18 O 1.21625 * 119.99714 * 186.46679 * 17 16 15
19 19 C 1.47164 * 120.00103 * 6.46336 * 17 16 15
20 20 C 1.38408 * 126.88333 * 24.35216 * 19 17 16
21 21 C 1.39668 * 105.35689 * 180.02562 * 20 19 17
22 22 N 1.30866 * 107.86635 * 359.74583 * 21 20 19
23 23 N 1.28444 * 110.92222 * 0.43481 * 22 21 20
24 24 C 1.46497 * 125.18931 * 179.81946 * 23 22 21
25 25 C 1.53779 * 113.68870 * 328.48606 * 24 23 22
26 26 C 1.53786 * 87.08141 * 89.13085 * 25 24 23
27 27 C 1.53780 * 113.61548 * 66.02323 * 24 23 22
28 28 C 1.46755 * 117.57513 * 56.97311 * 16 15 14
29 29 C 1.46467 * 126.05909 * 179.97438 * 9 7 2
30 30 H 1.09001 * 108.41759 * 90.75101 * 29 9 7
31 31 H 0.97003 * 119.99875 * 359.97438 * 1 2 3
32 32 H 1.09002 * 109.89869 * 297.76879 * 10 9 7
33 33 H 1.08993 * 109.90893 * 59.00764 * 10 9 7
34 34 H 1.09003 * 110.78291 * 95.43440 * 11 10 9
35 35 H 1.09003 * 110.77943 * 218.87574 * 11 10 9
36 36 H 1.09001 * 109.25517 * 284.86071 * 14 12 11
37 37 H 1.09005 * 109.25907 * 44.33387 * 14 12 11
38 38 H 1.09002 * 109.65460 * 183.15733 * 15 14 12
39 39 H 1.08996 * 109.60340 * 62.55876 * 15 14 12
40 40 H 1.07997 * 127.32055 * 0.05670 * 20 19 17
41 41 H 1.08003 * 126.06411 * 180.02562 * 21 20 19
42 42 H 1.08998 * 112.85025 * 197.21898 * 24 23 22
43 43 H 1.09001 * 113.61202 * 203.67467 * 25 24 23
44 44 H 1.08991 * 113.61996 * 334.58023 * 25 24 23
45 45 H 1.08998 * 113.61031 * 270.88404 * 26 25 24
46 46 H 1.08994 * 113.61909 * 139.98257 * 26 25 24
47 47 H 1.09002 * 113.61458 * 25.34970 * 27 24 23
48 48 H 1.08995 * 113.61766 * 156.25200 * 27 24 23
49 49 H 1.09000 * 109.21924 * 68.08415 * 28 16 15
50 50 H 1.09000 * 109.22591 * 187.48057 * 28 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 3.7102 1.3463 0.0006
5 1 1.8914 2.3964 -1.2124
6 1 1.8916 2.3965 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2022 -0.0001
9 7 1.3255 -2.3881 -0.0005
10 6 -0.1406 -2.5437 0.0005
11 6 -0.4378 -4.0592 -0.0414
12 6 0.8713 -4.6464 -0.6544
13 1 1.0210 -5.6971 -0.4060
14 6 0.7947 -4.3916 -2.1620
15 6 2.1629 -4.5712 -2.8074
16 7 3.1081 -3.6582 -2.1452
17 6 3.8002 -2.7395 -2.8477
18 8 4.6602 -2.0765 -2.2999
19 6 3.5154 -2.5387 -4.2775
20 6 2.3323 -2.8236 -4.9368
21 6 2.5543 -2.4626 -6.2676
22 7 3.7748 -1.9994 -6.3597
23 7 4.3659 -2.0344 -5.2199
24 6 5.7405 -1.5948 -4.9679
25 6 6.6825 -1.7939 -6.1669
26 6 6.2619 -0.3891 -6.6302
27 6 5.9480 -0.0828 -5.1563
28 6 3.2649 -3.7803 -0.6911
29 6 1.9199 -3.7267 -0.0016
30 1 2.0480 -4.0475 1.0323
31 1 -0.4850 0.8401 0.0004
32 1 -0.5592 -2.1084 0.9079
33 1 -0.5660 -2.0577 -0.8774
34 1 -0.6032 -4.4488 0.9631
35 1 -1.2932 -4.2679 -0.6840
36 1 0.0899 -5.0923 -2.6097
37 1 0.4489 -3.3728 -2.3373
38 1 2.1018 -4.3319 -3.8691
39 1 2.4950 -5.6015 -2.6797
40 1 1.4292 -3.2367 -4.5124
41 1 1.8432 -2.5462 -7.0762
42 1 6.1417 -1.9770 -4.0292
43 1 7.7340 -1.8653 -5.8889
44 1 6.3674 -2.5890 -6.8425
45 1 5.3820 -0.3868 -7.2736
46 1 7.0839 0.2021 -7.0336
47 1 5.0398 0.5034 -5.0159
48 1 6.7986 0.3136 -4.6020
49 1 3.7489 -4.7295 -0.4609
50 1 3.8871 -2.9627 -0.3273
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001042063743.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:51:59
Heat of formation + Delta-G solvation = 101.089267 kcal
Electronic energy + Delta-G solvation = -32654.229776 eV
Core-core repulsion = 28684.796696 eV
Total energy + Delta-G solvation = -3969.433080 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-43.72318 -41.28517 -39.49698 -39.45677 -36.68762 -34.69701 -33.19340 -32.59947
-32.12326 -30.43455 -30.03497 -26.82662 -26.78384 -26.48145 -25.87481 -24.00657
-23.43593 -22.74738 -21.94909 -21.71704 -20.11948 -19.42290 -18.47127 -18.35364
-17.53956 -17.10704 -16.95154 -16.59760 -16.36520 -16.10396 -15.91047 -15.75320
-15.51783 -15.20140 -14.77800 -14.54933 -14.36891 -14.10737 -13.87630 -13.54150
-13.48908 -13.35725 -13.20465 -13.04542 -12.99698 -12.69941 -12.53384 -12.33382
-12.07460 -11.98322 -11.70467 -11.68808 -11.67871 -11.54841 -11.38787 -11.25654
-11.11630 -10.89888 -10.69351 -10.20666 -9.91819 -9.52910 -8.81140 -7.86507
-5.15403 0.24967 1.28365 1.30331 1.32839 1.42832 1.62747 2.02675
2.18450 2.43671 3.21096 3.32213 3.37491 3.45452 3.60041 3.73083
3.78224 3.88623 3.94822 3.99155 4.12526 4.15769 4.31274 4.39281
4.48191 4.50966 4.57312 4.62344 4.63181 4.68082 4.70210 4.76216
4.79044 4.86248 4.87226 4.91006 4.96349 4.99731 5.02464 5.15049
5.19536 5.25489 5.32515 5.51450 5.52975 5.63445 5.69144 5.75218
5.83070 5.83630 6.22288 6.40358 7.01785 7.12857 7.13945 7.82148
8.45000 9.24144
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010834 B = 0.004908 C = 0.003947
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2583.719638 B = 5703.544361 C = 7092.000076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.946 5.946
2 C -0.062 4.062
3 Si 0.948 3.052
4 H -0.282 1.282
5 H -0.299 1.299
6 H -0.286 1.286
7 C -0.200 4.200
8 H 0.065 0.935
9 N -0.605 5.605
10 C 0.185 3.815
11 C -0.129 4.129
12 C -0.084 4.084
13 H 0.124 0.876
14 C -0.119 4.119
15 C 0.076 3.924
16 N -0.576 5.576
17 C 0.585 3.415
18 O -0.582 6.582
19 C -0.048 4.048
20 C -0.193 4.193
21 C -0.002 4.002
22 N -0.286 5.286
23 N -0.248 5.248
24 C 0.098 3.902
25 C -0.117 4.117
26 C -0.125 4.125
27 C -0.147 4.147
28 C 0.120 3.880
29 C 0.141 3.859
30 H 0.031 0.969
31 H 0.242 0.758
32 H -0.003 1.003
33 H 0.009 0.991
34 H 0.067 0.933
35 H 0.084 0.916
36 H 0.108 0.892
37 H 0.037 0.963
38 H 0.118 0.882
39 H 0.101 0.899
40 H 0.186 0.814
41 H 0.223 0.777
42 H 0.108 0.892
43 H 0.124 0.876
44 H 0.078 0.922
45 H 0.080 0.920
46 H 0.095 0.905
47 H 0.042 0.958
48 H 0.115 0.885
49 H 0.098 0.902
50 H 0.053 0.947
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.551 -13.954 -13.143 20.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.596 5.596
2 C -0.255 4.255
3 Si 0.779 3.221
4 H -0.207 1.207
5 H -0.227 1.227
6 H -0.213 1.213
7 C -0.330 4.330
8 H 0.083 0.917
9 N -0.330 5.330
10 C 0.061 3.939
11 C -0.167 4.167
12 C -0.103 4.103
13 H 0.142 0.858
14 C -0.157 4.157
15 C -0.044 4.044
16 N -0.307 5.307
17 C 0.372 3.628
18 O -0.463 6.463
19 C -0.176 4.176
20 C -0.222 4.222
21 C -0.178 4.178
22 N -0.118 5.118
23 N -0.036 5.036
24 C -0.004 4.004
25 C -0.155 4.155
26 C -0.162 4.162
27 C -0.185 4.185
28 C -0.003 4.003
29 C 0.034 3.966
30 H 0.048 0.952
31 H 0.052 0.948
32 H 0.015 0.985
33 H 0.027 0.973
34 H 0.086 0.914
35 H 0.102 0.898
36 H 0.126 0.874
37 H 0.056 0.944
38 H 0.135 0.865
39 H 0.119 0.881
40 H 0.203 0.797
41 H 0.239 0.761
42 H 0.126 0.874
43 H 0.142 0.858
44 H 0.096 0.904
45 H 0.099 0.901
46 H 0.114 0.886
47 H 0.061 0.939
48 H 0.133 0.867
49 H 0.116 0.884
50 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 7.897 -12.915 -13.553 20.318
hybrid contribution -0.560 1.652 1.335 2.197
sum 7.336 -11.263 -12.218 18.165
Atomic orbital electron populations
1.70133 1.05408 1.24351 1.59750 1.25245 0.96314 0.99673 1.04236
0.85428 0.78027 0.81909 0.76727 1.20708 1.22691 1.21315 1.19066
0.90032 0.83768 1.40118 0.91735 1.44471 1.02259 1.00264 1.86011
1.20979 0.83419 0.92503 0.97028 1.23032 0.98061 0.94650 1.00970
1.22439 0.93801 0.99073 0.95033 0.85786 1.21723 0.97000 1.02016
0.94973 1.22634 0.88302 0.93921 0.99576 1.47610 1.41734 1.33637
1.07698 1.17171 0.81349 0.79541 0.84720 1.90731 1.35131 1.48492
1.71940 1.21518 0.94433 1.09793 0.91889 1.22748 0.97967 1.07053
0.94408 1.24223 0.93745 1.01842 0.97952 1.73072 1.10407 1.20781
1.07557 1.45481 1.11647 1.42692 1.03731 1.22811 0.77251 0.98423
1.01897 1.23177 0.99313 0.98733 0.94281 1.22865 1.02364 0.96306
0.94678 1.23339 1.02256 0.93348 0.99577 1.21351 0.98006 1.02062
0.78899 1.21034 0.92693 0.86206 0.96670 0.95193 0.94846 0.98463
0.97300 0.91421 0.89774 0.87404 0.94388 0.86493 0.88094 0.79738
0.76072 0.87387 0.85751 0.90359 0.90114 0.88650 0.93883 0.86684
0.88396 0.92794
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -58.80 10.38 21.65 0.22 -58.58 16
2 C -0.06 -3.74 5.49 84.86 0.47 -3.28 16
3 Si 0.95 50.66 29.55 68.60 2.03 52.68 16
4 H -0.28 -15.03 7.11 99.48 0.71 -14.33 16
5 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16
6 H -0.29 -14.87 7.11 99.48 0.71 -14.17 16
7 C -0.20 -11.61 9.70 84.03 0.81 -10.80 16
8 H 0.06 3.90 6.51 -2.91 -0.02 3.89 16
9 N -0.61 -30.15 3.20 -674.17 -2.15 -32.30 16
10 C 0.19 8.88 4.61 86.71 0.40 9.28 16
11 C -0.13 -4.18 6.33 32.15 0.20 -3.98 16
12 C -0.08 -2.33 3.68 -9.38 -0.03 -2.36 16
13 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16
14 C -0.12 -3.05 4.73 30.41 0.14 -2.91 16
15 C 0.08 1.83 5.79 86.04 0.50 2.33 16
16 N -0.58 -19.65 2.98 -828.26 -2.47 -22.12 16
17 C 0.58 23.28 7.54 86.59 0.65 23.94 16
18 O -0.58 -27.39 14.66 -4.11 -0.06 -27.45 16
19 C -0.05 -1.68 6.59 40.79 0.27 -1.41 16
20 C -0.19 -5.50 8.77 22.66 0.20 -5.31 16
21 C 0.00 -0.05 12.03 85.18 1.02 0.98 16
22 N -0.29 -8.33 10.13 -57.14 -0.58 -8.91 16
23 N -0.25 -7.99 3.48 -311.82 -1.09 -9.07 16
24 C 0.10 2.82 4.35 45.52 0.20 3.01 16
25 C -0.12 -2.36 7.56 31.12 0.24 -2.12 16
26 C -0.12 -2.61 7.69 31.12 0.24 -2.37 16
27 C -0.15 -3.96 7.88 31.12 0.25 -3.71 16
28 C 0.12 4.29 5.67 85.76 0.49 4.78 16
29 C 0.14 5.28 2.96 44.76 0.13 5.41 16
30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
31 H 0.24 14.80 8.31 -92.71 -0.77 14.03 16
32 H 0.00 -0.16 7.57 -2.39 -0.02 -0.18 16
33 H 0.01 0.48 7.04 -2.39 -0.02 0.46 16
34 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
35 H 0.08 2.35 7.97 -2.39 -0.02 2.34 16
36 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16
37 H 0.04 1.34 6.84 -2.38 -0.02 1.32 16
38 H 0.12 2.60 3.28 -2.39 -0.01 2.60 16
39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16
40 H 0.19 4.58 5.75 -2.91 -0.02 4.56 16
41 H 0.22 3.57 8.06 -2.91 -0.02 3.55 16
42 H 0.11 3.46 6.58 -2.39 -0.02 3.44 16
43 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16
44 H 0.08 1.61 8.09 -2.39 -0.02 1.59 16
45 H 0.08 1.92 7.20 -2.39 -0.02 1.91 16
46 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16
47 H 0.04 1.41 8.14 -2.39 -0.02 1.40 16
48 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16
49 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16
50 H 0.05 2.39 5.58 -2.39 -0.01 2.38 16
Total: -1.00 -80.16 377.27 3.03 -77.13
By element:
Atomic # 1 Polarization: 16.19 SS G_CDS: 0.95 Total: 17.14 kcal
Atomic # 6 Polarization: 5.31 SS G_CDS: 6.17 Total: 11.48 kcal
Atomic # 7 Polarization: -124.92 SS G_CDS: -6.06 Total: -130.98 kcal
Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal
Atomic # 14 Polarization: 50.66 SS G_CDS: 2.03 Total: 52.68 kcal
Total: -80.16 3.03 -77.13 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001042063743.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 178.216 kcal
(2) G-P(sol) polarization free energy of solvation -80.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.056 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.127 kcal
(6) G-S(sol) free energy of system = (1) + (5) 101.089 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds