Wall clock time and date at job start Wed Apr 1 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.45538 * 2 1 4 4 C 1.34774 * 120.00100 * 60.02965 * 3 2 1 5 5 O 1.21279 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99773 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.63524 * 60.40552 * 6 4 3 8 8 C 1.53317 * 109.63281 * 181.01239 * 6 4 3 9 9 C 1.52807 * 108.53353 * 189.45230 * 8 6 4 10 10 C 1.50445 * 110.45574 * 308.98302 * 9 8 6 11 11 N 1.32894 * 118.53456 * 197.42277 * 10 9 8 12 12 C 1.31601 * 121.05914 * 180.60419 * 11 10 9 13 13 N 1.31817 * 121.67727 * 359.97438 * 12 11 10 14 14 C 1.32187 * 120.63477 * 359.86913 * 13 12 11 15 15 C 1.37762 * 122.57873 * 17.80006 * 10 9 8 16 16 C 1.50343 * 122.80114 * 359.17448 * 15 10 9 17 17 C 1.53034 * 109.44927 * 119.96678 * 2 1 3 18 18 C 1.53190 * 109.31270 * 181.38278 * 17 2 1 19 19 N 1.46931 * 108.77206 * 305.35931 * 18 17 2 20 20 C 1.36934 * 120.62942 * 233.58763 * 19 18 17 21 21 H 1.07996 * 120.00247 * 27.69328 * 20 19 18 22 22 C 1.38815 * 119.99473 * 207.69276 * 20 19 18 23 23 N 1.31619 * 120.00424 * 17.37505 * 22 20 19 24 24 Si 1.86803 * 119.99783 * 197.36543 * 22 20 19 25 25 H 1.48502 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46802 * 120.00240 * 24 22 20 27 27 H 1.48501 * 109.47415 * 240.00192 * 24 22 20 28 28 C 1.46925 * 118.73687 * 53.61402 * 19 18 17 29 29 C 1.53040 * 109.46108 * 240.02765 * 2 1 3 30 30 H 1.09003 * 109.47410 * 60.00407 * 1 2 3 31 31 H 1.09006 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47348 * 299.99895 * 1 2 3 33 33 H 0.97001 * 119.99632 * 240.02022 * 3 2 1 34 34 H 1.08995 * 109.62361 * 309.16681 * 8 6 4 35 35 H 1.08999 * 109.62685 * 69.54827 * 8 6 4 36 36 H 1.08999 * 109.30449 * 188.68209 * 9 8 6 37 37 H 1.09001 * 109.30521 * 69.28462 * 9 8 6 38 38 H 1.08001 * 119.16463 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.36369 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.30627 * 138.02734 * 16 15 10 41 41 H 1.08997 * 109.31356 * 257.43740 * 16 15 10 42 42 H 1.09010 * 109.49847 * 301.33353 * 17 2 1 43 43 H 1.09000 * 109.50199 * 61.42257 * 17 2 1 44 44 H 1.09001 * 109.58849 * 185.57831 * 18 17 2 45 45 H 1.08990 * 109.59104 * 65.15215 * 18 17 2 46 46 H 0.96997 * 120.00453 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58802 * 186.60084 * 28 19 18 48 48 H 1.09000 * 109.58545 * 66.17404 * 28 19 18 49 49 H 1.08997 * 109.49839 * 298.58138 * 29 2 1 50 50 H 1.09006 * 109.49584 * 58.67586 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6926 2.2110 1.0111 5 8 0.9956 1.8141 1.9207 6 6 2.1951 3.6317 1.0113 7 1 1.8272 4.1505 0.1262 8 6 1.7074 4.3504 2.2747 9 6 2.0247 5.8391 2.1398 10 6 3.4687 6.0372 1.7671 11 7 4.0118 7.2367 1.9465 12 6 5.2672 7.4684 1.6265 13 7 6.0369 6.5270 1.1177 14 6 5.5659 5.3088 0.9140 15 6 4.2444 5.0273 1.2415 16 6 3.7234 3.6360 1.0111 17 6 2.0396 -0.7208 1.2501 18 6 3.5710 -0.6888 1.2645 19 7 4.0676 -1.2493 0.0003 20 6 4.9759 -2.2740 0.0005 21 1 5.0089 -2.9662 0.8288 22 6 5.8543 -2.4229 -1.0640 23 7 6.0605 -1.4210 -1.8923 24 14 6.7440 -4.0453 -1.3208 25 1 6.3413 -5.0039 -0.2605 26 1 6.3870 -4.6004 -2.6511 27 1 8.2106 -3.8214 -1.2552 28 6 3.5714 -0.6890 -1.2640 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.5753 1.6988 -0.7277 34 1 0.6313 4.2136 2.3813 35 1 2.2166 3.9423 3.1478 36 1 1.8258 6.3373 3.0887 37 1 1.3902 6.2743 1.3677 38 1 5.6772 8.4549 1.7849 39 1 6.2005 4.5407 0.4972 40 1 4.0847 3.2705 0.0498 41 1 4.0858 2.9797 1.8022 42 1 1.6568 -0.2207 2.1399 43 1 1.6973 -1.7556 1.2384 44 1 3.9412 -1.2848 2.0987 45 1 3.9141 0.3405 1.3676 46 1 6.6740 -1.5252 -2.6364 47 1 3.9416 -1.2850 -2.0981 48 1 3.9145 0.3405 -1.3671 49 1 1.6976 -1.7557 -1.2383 50 1 1.6574 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045461395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:53 Heat of formation + Delta-G solvation = 19.100241 kcal Electronic energy + Delta-G solvation = -31534.856594 eV Core-core repulsion = 27561.868203 eV Total energy + Delta-G solvation = -3972.988391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.55010 -40.25646 -37.95487 -36.49561 -34.44902 -34.23728 -32.18081 -31.57734 -31.09573 -30.06140 -29.78968 -27.45506 -25.50183 -24.49122 -24.06542 -23.17048 -22.35748 -21.77277 -20.76330 -19.70568 -18.70292 -17.99392 -17.14387 -17.05651 -16.65689 -15.60037 -15.17150 -14.96771 -14.87739 -14.42045 -14.17293 -14.03204 -13.96771 -13.78298 -13.57900 -13.43256 -13.33803 -13.13968 -13.01117 -12.51445 -12.23328 -12.12092 -11.75849 -11.67131 -11.39073 -11.28579 -11.22527 -11.09278 -10.97542 -10.93623 -10.76256 -10.55104 -10.39090 -10.30568 -9.91359 -9.78740 -9.65422 -9.37698 -9.34683 -9.10586 -8.66143 -8.50246 -6.71259 -5.84688 -3.25405 0.73751 0.87936 2.82773 3.33459 3.40677 3.42444 3.44407 3.57689 3.80438 4.05466 4.26341 4.37786 4.45842 4.47330 4.63341 4.83509 5.05752 5.10965 5.15070 5.22113 5.29251 5.33861 5.35062 5.43111 5.47706 5.50806 5.58508 5.60604 5.68833 5.89178 5.91700 5.97087 6.01911 6.06909 6.15735 6.26539 6.27819 6.29453 6.38075 6.49121 6.64558 6.66787 6.79325 6.81801 6.91681 7.04383 7.24326 7.52983 7.75381 7.86292 7.91883 8.39838 8.49705 9.16744 9.80222 10.36673 11.23830 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.003439 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.839027 B = 8140.752741 C = 9984.198666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.708 5.708 4 C 0.521 3.479 5 O -0.540 6.540 6 C -0.109 4.109 7 H 0.098 0.902 8 C -0.098 4.098 9 C -0.072 4.072 10 C 0.178 3.822 11 N -0.524 5.524 12 C 0.285 3.715 13 N -0.522 5.522 14 C 0.154 3.846 15 C -0.173 4.173 16 C -0.066 4.066 17 C -0.142 4.142 18 C 0.151 3.849 19 N -0.591 5.591 20 C -0.249 4.249 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.899 3.101 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.173 3.827 29 C -0.147 4.147 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.194 0.806 39 H 0.172 0.828 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.049 0.951 45 H 0.015 0.985 46 H 0.252 0.748 47 H 0.089 0.911 48 H 0.015 0.985 49 H 0.071 0.929 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 13.975 3.579 16.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.099 3.901 3 N -0.358 5.358 4 C 0.307 3.693 5 O -0.417 6.417 6 C -0.130 4.130 7 H 0.116 0.884 8 C -0.136 4.136 9 C -0.110 4.110 10 C 0.034 3.966 11 N -0.238 5.238 12 C -0.003 4.003 13 N -0.235 5.235 14 C -0.013 4.013 15 C -0.177 4.177 16 C -0.104 4.104 17 C -0.182 4.182 18 C 0.025 3.975 19 N -0.313 5.313 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.549 5.549 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.047 3.953 29 C -0.186 4.186 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.210 0.790 39 H 0.189 0.811 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.107 0.893 48 H 0.033 0.967 49 H 0.089 0.911 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.567 14.587 4.243 17.441 hybrid contribution 0.675 -1.415 -0.858 1.787 sum -7.893 13.173 3.385 15.725 Atomic orbital electron populations 1.22225 0.95481 1.01866 1.02259 1.20264 0.92539 0.80201 0.97128 1.46192 1.52713 1.12154 1.24790 1.20245 0.80237 0.86823 0.82007 1.90618 1.38353 1.76907 1.35850 1.21373 0.96080 0.94437 1.01120 0.88384 1.21402 1.03018 0.92255 0.96907 1.20461 0.89367 0.97687 1.03446 1.21365 0.96769 0.87964 0.90519 1.68384 1.14336 1.22485 1.18567 1.24876 0.85990 0.98856 0.90585 1.68440 1.39016 1.01819 1.14238 1.23411 0.92545 0.93798 0.91568 1.21136 0.96378 0.98104 1.02071 1.20325 0.93621 0.92117 1.04369 1.22388 0.98951 0.99635 0.97259 1.20825 0.90881 0.95990 0.89788 1.44045 1.48181 1.39696 0.99411 1.19239 1.09633 1.02958 1.06078 0.91729 1.24987 0.97212 0.97415 0.99947 1.70014 1.37889 1.28959 1.18010 0.86265 0.79183 0.83827 0.77766 1.20290 1.21594 1.21762 1.20730 0.86809 0.96983 0.90793 1.22531 1.01451 1.00034 0.94606 0.93429 0.92327 0.90894 0.76557 0.89409 0.90630 0.88865 0.89129 0.78970 0.81079 0.89074 0.88966 0.90890 0.91947 0.93229 0.96762 0.93750 0.89300 0.96696 0.91082 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.40 37.16 0.31 -1.97 16 2 C 0.18 2.88 0.66 -131.78 -0.09 2.79 16 3 N -0.71 -9.81 4.00 -47.57 -0.19 -10.00 16 4 C 0.52 6.98 6.56 -10.99 -0.07 6.90 16 5 O -0.54 -8.67 12.06 5.56 0.07 -8.61 16 6 C -0.11 -1.11 2.55 -91.69 -0.23 -1.35 16 7 H 0.10 0.86 8.11 -51.93 -0.42 0.44 16 8 C -0.10 -0.94 4.70 -26.67 -0.13 -1.07 16 9 C -0.07 -0.63 5.96 -28.11 -0.17 -0.80 16 10 C 0.18 1.94 6.62 -82.43 -0.55 1.40 16 11 N -0.52 -6.06 10.32 -11.00 -0.11 -6.18 16 12 C 0.28 3.10 12.29 -92.30 -1.13 1.96 16 13 N -0.52 -6.30 10.44 -14.54 -0.15 -6.46 16 14 C 0.15 1.74 10.93 -17.11 -0.19 1.56 16 15 C -0.17 -1.88 5.73 -104.68 -0.60 -2.48 16 16 C -0.07 -0.69 4.87 -28.14 -0.14 -0.83 16 17 C -0.14 -2.52 4.67 -26.62 -0.12 -2.64 16 18 C 0.15 3.08 6.26 -3.71 -0.02 3.06 16 19 N -0.59 -13.81 2.99 -172.33 -0.52 -14.33 16 20 C -0.25 -6.58 9.59 -15.06 -0.14 -6.72 16 21 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -24.79 11.19 55.49 0.62 -24.17 16 24 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.17 3.69 5.04 -3.71 -0.02 3.67 16 29 C -0.15 -2.50 4.96 -26.61 -0.13 -2.63 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.12 6.17 -51.93 -0.32 0.80 16 33 H 0.40 5.19 6.89 -40.82 -0.28 4.91 16 34 H 0.09 0.86 7.80 -51.93 -0.41 0.45 16 35 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.17 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.09 0.93 7.83 -51.93 -0.41 0.52 16 41 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 42 H 0.07 1.31 6.20 -51.92 -0.32 0.99 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.04 7.93 -51.93 -0.41 0.62 16 45 H 0.01 0.29 7.74 -51.93 -0.40 -0.11 16 46 H 0.25 6.74 8.31 -40.82 -0.34 6.41 16 47 H 0.09 2.19 6.04 -51.93 -0.31 1.88 16 48 H 0.02 0.32 6.94 -51.93 -0.36 -0.04 16 49 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -30.46 383.77 -10.88 -41.34 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.84 Total: 5.72 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.51 Total: 0.84 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.35 Total: -61.13 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.61 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.46 -10.88 -41.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045461395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.437 kcal (2) G-P(sol) polarization free energy of solvation -30.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds