Wall clock time and date at job start Wed Apr 1 2020 03:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.45538 * 2 1 4 4 C 1.34774 * 120.00100 * 60.02965 * 3 2 1 5 5 O 1.21279 * 120.00069 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99773 * 179.97438 * 4 3 2 7 7 H 1.08993 * 109.63524 * 60.40552 * 6 4 3 8 8 C 1.53317 * 109.63281 * 181.01239 * 6 4 3 9 9 C 1.52807 * 108.53353 * 189.45230 * 8 6 4 10 10 C 1.50445 * 110.45574 * 308.98302 * 9 8 6 11 11 N 1.32894 * 118.53456 * 197.42277 * 10 9 8 12 12 C 1.31601 * 121.05914 * 180.60419 * 11 10 9 13 13 N 1.31817 * 121.67727 * 359.97438 * 12 11 10 14 14 C 1.32187 * 120.63477 * 359.86913 * 13 12 11 15 15 C 1.37762 * 122.57873 * 17.80006 * 10 9 8 16 16 C 1.50343 * 122.80114 * 359.17448 * 15 10 9 17 17 C 1.53034 * 109.44927 * 119.96678 * 2 1 3 18 18 C 1.53190 * 109.31270 * 181.38278 * 17 2 1 19 19 N 1.46931 * 108.77206 * 305.35931 * 18 17 2 20 20 C 1.36934 * 120.62942 * 233.58763 * 19 18 17 21 21 H 1.07996 * 120.00247 * 27.69328 * 20 19 18 22 22 C 1.38815 * 119.99473 * 207.69276 * 20 19 18 23 23 N 1.31619 * 120.00424 * 17.37505 * 22 20 19 24 24 Si 1.86803 * 119.99783 * 197.36543 * 22 20 19 25 25 H 1.48502 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46802 * 120.00240 * 24 22 20 27 27 H 1.48501 * 109.47415 * 240.00192 * 24 22 20 28 28 C 1.46925 * 118.73687 * 53.61402 * 19 18 17 29 29 C 1.53040 * 109.46108 * 240.02765 * 2 1 3 30 30 H 1.09003 * 109.47410 * 60.00407 * 1 2 3 31 31 H 1.09006 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47348 * 299.99895 * 1 2 3 33 33 H 0.97001 * 119.99632 * 240.02022 * 3 2 1 34 34 H 1.08995 * 109.62361 * 309.16681 * 8 6 4 35 35 H 1.08999 * 109.62685 * 69.54827 * 8 6 4 36 36 H 1.08999 * 109.30449 * 188.68209 * 9 8 6 37 37 H 1.09001 * 109.30521 * 69.28462 * 9 8 6 38 38 H 1.08001 * 119.16463 * 179.97438 * 12 11 10 39 39 H 1.08004 * 120.36369 * 180.02562 * 14 13 12 40 40 H 1.09005 * 109.30627 * 138.02734 * 16 15 10 41 41 H 1.08997 * 109.31356 * 257.43740 * 16 15 10 42 42 H 1.09010 * 109.49847 * 301.33353 * 17 2 1 43 43 H 1.09000 * 109.50199 * 61.42257 * 17 2 1 44 44 H 1.09001 * 109.58849 * 185.57831 * 18 17 2 45 45 H 1.08990 * 109.59104 * 65.15215 * 18 17 2 46 46 H 0.96997 * 120.00453 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58802 * 186.60084 * 28 19 18 48 48 H 1.09000 * 109.58545 * 66.17404 * 28 19 18 49 49 H 1.08997 * 109.49839 * 298.58138 * 29 2 1 50 50 H 1.09006 * 109.49584 * 58.67586 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0179 1.3814 0.0000 4 6 1.6926 2.2110 1.0111 5 8 0.9956 1.8141 1.9207 6 6 2.1951 3.6317 1.0113 7 1 1.8272 4.1505 0.1262 8 6 1.7074 4.3504 2.2747 9 6 2.0247 5.8391 2.1398 10 6 3.4687 6.0372 1.7671 11 7 4.0118 7.2367 1.9465 12 6 5.2672 7.4684 1.6265 13 7 6.0369 6.5270 1.1177 14 6 5.5659 5.3088 0.9140 15 6 4.2444 5.0273 1.2415 16 6 3.7234 3.6360 1.0111 17 6 2.0396 -0.7208 1.2501 18 6 3.5710 -0.6888 1.2645 19 7 4.0676 -1.2493 0.0003 20 6 4.9759 -2.2740 0.0005 21 1 5.0089 -2.9662 0.8288 22 6 5.8543 -2.4229 -1.0640 23 7 6.0605 -1.4210 -1.8923 24 14 6.7440 -4.0453 -1.3208 25 1 6.3413 -5.0039 -0.2605 26 1 6.3870 -4.6004 -2.6511 27 1 8.2106 -3.8214 -1.2552 28 6 3.5714 -0.6890 -1.2640 29 6 2.0399 -0.7209 -1.2500 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.5753 1.6988 -0.7277 34 1 0.6313 4.2136 2.3813 35 1 2.2166 3.9423 3.1478 36 1 1.8258 6.3373 3.0887 37 1 1.3902 6.2743 1.3677 38 1 5.6772 8.4549 1.7849 39 1 6.2005 4.5407 0.4972 40 1 4.0847 3.2705 0.0498 41 1 4.0858 2.9797 1.8022 42 1 1.6568 -0.2207 2.1399 43 1 1.6973 -1.7556 1.2384 44 1 3.9412 -1.2848 2.0987 45 1 3.9141 0.3405 1.3676 46 1 6.6740 -1.5252 -2.6364 47 1 3.9416 -1.2850 -2.0981 48 1 3.9145 0.3405 -1.3671 49 1 1.6976 -1.7557 -1.2383 50 1 1.6574 -0.2208 -2.1398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045461395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:52 Heat of formation + Delta-G solvation = 2.695233 kcal Electronic energy + Delta-G solvation = -31535.567968 eV Core-core repulsion = 27561.868203 eV Total energy + Delta-G solvation = -3973.699765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.40669 -41.42055 -39.21781 -37.54800 -36.03522 -35.09633 -33.67030 -32.64917 -32.33511 -31.57689 -30.83908 -29.03416 -26.38256 -25.89949 -25.28445 -23.99475 -23.91638 -22.97086 -22.16024 -20.69558 -20.08973 -18.95429 -18.65017 -17.99193 -17.76500 -16.82806 -16.62555 -16.16262 -16.04697 -15.72866 -15.31809 -15.26099 -15.05552 -14.90000 -14.82535 -14.72625 -14.53532 -14.41031 -14.02780 -13.91846 -13.29803 -13.19520 -13.09276 -13.02895 -12.80742 -12.75140 -12.58553 -12.50190 -12.17485 -12.10647 -11.96787 -11.91469 -11.80957 -11.72581 -11.36739 -11.26909 -11.25258 -10.51854 -10.34700 -10.21730 -10.18869 -9.85488 -8.62435 -7.85821 -5.28359 -0.09658 0.02647 1.45680 1.49526 1.58212 1.75930 2.32369 2.52622 2.73511 3.03432 3.25959 3.29198 3.44067 3.50915 3.62285 3.73508 3.78050 3.90702 4.01320 4.09751 4.19357 4.26902 4.28965 4.40052 4.47215 4.53167 4.57059 4.66361 4.68135 4.77705 4.82604 4.86308 4.91646 4.94280 4.95866 5.03133 5.08399 5.14513 5.19833 5.26031 5.29376 5.34545 5.41116 5.47152 5.53345 5.67039 5.75546 5.82684 5.97904 6.41853 6.75130 7.08135 7.19135 7.40776 7.89908 8.40600 9.19573 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011549 B = 0.003439 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.839027 B = 8140.752741 C = 9984.198666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.188 3.812 3 N -0.707 5.707 4 C 0.522 3.478 5 O -0.565 6.565 6 C -0.099 4.099 7 H 0.122 0.878 8 C -0.091 4.091 9 C -0.064 4.064 10 C 0.173 3.827 11 N -0.535 5.535 12 C 0.281 3.719 13 N -0.541 5.541 14 C 0.144 3.856 15 C -0.177 4.177 16 C -0.058 4.058 17 C -0.131 4.131 18 C 0.154 3.846 19 N -0.605 5.605 20 C -0.262 4.262 21 H 0.057 0.943 22 C -0.041 4.041 23 N -0.926 5.926 24 Si 0.957 3.043 25 H -0.273 1.273 26 H -0.289 1.289 27 H -0.294 1.294 28 C 0.180 3.820 29 C -0.133 4.133 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.405 0.595 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.221 0.779 39 H 0.179 0.821 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.015 0.985 46 H 0.250 0.750 47 H 0.054 0.946 48 H 0.013 0.987 49 H 0.063 0.937 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 15.014 3.259 18.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.102 3.898 3 N -0.358 5.358 4 C 0.309 3.691 5 O -0.444 6.444 6 C -0.120 4.120 7 H 0.140 0.860 8 C -0.129 4.129 9 C -0.102 4.102 10 C 0.029 3.971 11 N -0.250 5.250 12 C -0.007 4.007 13 N -0.255 5.255 14 C -0.023 4.023 15 C -0.181 4.181 16 C -0.096 4.096 17 C -0.171 4.171 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.393 4.393 21 H 0.074 0.926 22 C -0.237 4.237 23 N -0.572 5.572 24 Si 0.786 3.214 25 H -0.198 1.198 26 H -0.215 1.215 27 H -0.221 1.221 28 C 0.054 3.946 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.241 0.759 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.237 0.763 39 H 0.196 0.804 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.082 0.918 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.917 15.636 3.928 18.928 hybrid contribution 1.125 -1.712 -0.698 2.164 sum -8.792 13.924 3.230 16.782 Atomic orbital electron populations 1.22111 0.93662 1.02407 1.02649 1.20120 0.93744 0.80823 0.95097 1.46150 1.52843 1.11473 1.25319 1.20705 0.79501 0.87720 0.81144 1.90612 1.39552 1.77605 1.36661 1.21350 0.95631 0.92512 1.02539 0.86013 1.21332 1.02929 0.92748 0.95911 1.20469 0.88285 0.96968 1.04461 1.21735 0.97695 0.87805 0.89911 1.68457 1.14676 1.22740 1.19081 1.25462 0.85849 0.99708 0.89674 1.68479 1.39631 1.02284 1.15130 1.23626 0.93033 0.94003 0.91590 1.21110 0.96299 0.98141 1.02512 1.20212 0.93816 0.91745 1.03875 1.22234 0.96587 0.99682 0.98557 1.20844 0.92711 0.95392 0.88239 1.44244 1.48081 1.39557 1.00969 1.19445 1.10172 1.03695 1.05939 0.92560 1.25585 0.98183 0.99934 0.99976 1.70128 1.38500 1.30256 1.18298 0.85368 0.77761 0.80742 0.77520 1.19782 1.21538 1.22069 1.20587 0.89517 0.95779 0.88714 1.22336 0.97999 1.00322 0.96565 0.91715 0.91778 0.91750 0.75914 0.89075 0.92105 0.88059 0.87277 0.76288 0.80387 0.88823 0.90636 0.90931 0.92562 0.94539 0.96723 0.94103 0.92790 0.96923 0.91821 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 8.40 71.98 0.60 -3.29 16 2 C 0.19 5.58 0.66 3.63 0.00 5.58 16 3 N -0.71 -18.40 4.00 -422.82 -1.69 -20.09 16 4 C 0.52 13.12 6.56 87.66 0.58 13.70 16 5 O -0.56 -17.38 12.06 -3.03 -0.04 -17.41 16 6 C -0.10 -1.85 2.55 -11.49 -0.03 -1.87 16 7 H 0.12 1.76 8.11 -2.39 -0.02 1.74 16 8 C -0.09 -1.60 4.70 30.64 0.14 -1.45 16 9 C -0.06 -0.98 5.96 29.70 0.18 -0.80 16 10 C 0.17 3.49 6.62 42.20 0.28 3.77 16 11 N -0.54 -11.52 10.32 -188.72 -1.95 -13.47 16 12 C 0.28 5.72 12.29 180.93 2.22 7.94 16 13 N -0.54 -12.66 10.44 -199.92 -2.09 -14.74 16 14 C 0.14 3.19 10.93 84.83 0.93 4.12 16 15 C -0.18 -3.66 5.73 -19.90 -0.11 -3.77 16 16 C -0.06 -1.16 4.87 29.68 0.14 -1.02 16 17 C -0.13 -4.54 4.67 30.67 0.14 -4.40 16 18 C 0.15 6.30 6.26 86.36 0.54 6.84 16 19 N -0.60 -28.58 2.99 -699.11 -2.09 -30.67 16 20 C -0.26 -14.02 9.59 84.03 0.81 -13.21 16 21 H 0.06 3.04 7.89 -2.91 -0.02 3.01 16 22 C -0.04 -2.18 4.91 84.86 0.42 -1.77 16 23 N -0.93 -51.44 11.19 21.65 0.24 -51.19 16 24 Si 0.96 43.74 29.59 68.60 2.03 45.77 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 28 C 0.18 7.65 5.04 86.36 0.43 8.08 16 29 C -0.13 -4.33 4.96 30.67 0.15 -4.18 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.06 1.82 6.17 -2.38 -0.01 1.81 16 33 H 0.40 9.79 6.89 -92.71 -0.64 9.15 16 34 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 35 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.22 2.92 8.06 -2.91 -0.02 2.89 16 39 H 0.18 3.49 8.06 -2.91 -0.02 3.46 16 40 H 0.09 1.82 7.83 -2.38 -0.02 1.80 16 41 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 42 H 0.07 2.56 6.20 -2.38 -0.01 2.54 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.55 7.93 -2.39 -0.02 1.53 16 45 H 0.01 0.61 7.74 -2.39 -0.02 0.59 16 46 H 0.25 13.50 8.31 -92.71 -0.77 12.73 16 47 H 0.05 2.69 6.04 -2.39 -0.01 2.68 16 48 H 0.01 0.54 6.94 -2.39 -0.02 0.53 16 49 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -65.17 383.77 2.15 -63.01 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.31 Total: 24.54 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 7.43 Total: 14.25 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -7.58 Total: -130.16 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.04 Total: -17.41 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -65.17 2.15 -63.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045461395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.709 kcal (2) G-P(sol) polarization free energy of solvation -65.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds