Wall clock time and date at job start Wed Apr 1 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31922 * 120.17163 * 2 1 4 4 N 1.28278 * 122.32476 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.51905 * 359.97438 * 4 3 2 6 6 C 1.38505 * 119.96533 * 359.72786 * 5 4 3 7 7 C 1.39729 * 120.17335 * 179.97438 * 2 1 3 8 8 C 1.48141 * 121.14165 * 0.02562 * 7 2 1 9 9 O 1.21510 * 120.00264 * 305.11052 * 8 7 2 10 10 N 1.34777 * 119.99640 * 125.10709 * 8 7 2 11 11 C 1.44579 * 118.78960 * 354.39251 * 10 8 7 12 12 C 1.54687 * 109.62530 * 270.63985 * 11 10 8 13 13 C 1.47015 * 110.64328 * 288.15533 * 12 11 10 14 14 C 1.52945 * 114.31054 * 62.91068 * 13 12 11 15 15 C 1.50554 * 109.11156 * 276.10885 * 14 13 12 16 16 C 1.53945 * 111.50389 * 214.30706 * 15 14 13 17 17 C 1.54138 * 104.89417 * 98.52212 * 16 15 14 18 18 N 1.47517 * 107.06957 * 358.24602 * 17 16 15 19 19 C 1.36945 * 126.98778 * 205.32898 * 18 17 16 20 20 H 1.07993 * 120.00152 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99813 * 359.96312 * 19 18 17 22 22 N 1.31620 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00134 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46829 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47083 * 119.99969 * 23 21 19 26 26 H 1.48498 * 109.47087 * 240.00653 * 23 21 19 27 27 C 1.48218 * 106.02495 * 25.29995 * 18 17 16 28 28 C 1.47591 * 118.78762 * 174.40795 * 10 8 7 29 29 H 1.08999 * 109.47298 * 274.98118 * 1 2 3 30 30 H 1.09009 * 109.47339 * 34.97485 * 1 2 3 31 31 H 1.08996 * 109.47356 * 154.97811 * 1 2 3 32 32 H 1.07998 * 120.01711 * 179.97438 * 5 4 3 33 33 H 1.08002 * 121.09151 * 180.28963 * 6 5 4 34 34 H 1.08996 * 109.44401 * 30.68441 * 11 10 8 35 35 H 1.08991 * 109.44560 * 150.59294 * 11 10 8 36 36 H 1.09000 * 109.24529 * 48.46024 * 12 11 10 37 37 H 1.09005 * 109.23729 * 167.85637 * 12 11 10 38 38 H 1.09005 * 108.51713 * 184.15291 * 13 12 11 39 39 H 1.09005 * 108.51422 * 301.80271 * 13 12 11 40 40 H 1.08999 * 109.51608 * 156.21831 * 14 13 12 41 41 H 1.09003 * 109.53131 * 36.00295 * 14 13 12 42 42 H 1.09008 * 110.35409 * 339.66989 * 16 15 14 43 43 H 1.09004 * 110.35669 * 217.38437 * 16 15 14 44 44 H 1.09008 * 109.91225 * 117.59804 * 17 16 15 45 45 H 1.09000 * 109.92240 * 238.88490 * 17 16 15 46 46 H 0.97007 * 120.00263 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.66639 * 79.86258 * 27 18 17 48 48 H 1.09010 * 110.66369 * 202.99496 * 27 18 17 49 49 H 1.09000 * 108.98785 * 17.44598 * 28 10 8 50 50 H 1.09004 * 108.99020 * 258.70559 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1887 0.0005 5 6 4.2023 0.1038 0.0015 6 6 3.6091 -1.1477 0.0078 7 6 2.2093 -1.2080 0.0005 8 6 1.4982 -2.5076 0.0006 9 8 0.6753 -2.7499 0.8611 10 7 1.7641 -3.4211 -0.9540 11 6 2.6551 -3.0605 -2.0340 12 6 1.8417 -2.4355 -3.1919 13 6 1.0485 -3.4631 -3.8819 14 6 -0.0089 -4.1362 -3.0055 15 6 0.6349 -5.2506 -2.2243 16 6 -0.3320 -6.4317 -2.0247 17 6 0.0536 -7.4484 -3.1172 18 7 1.1437 -6.8438 -3.9060 19 6 1.4721 -7.1218 -5.2061 20 1 2.2977 -6.6083 -5.6762 21 6 0.7440 -8.0639 -5.9196 22 7 -0.2624 -8.6896 -5.3468 23 14 1.1923 -8.4437 -7.6928 24 1 2.3535 -7.6119 -8.0988 25 1 1.5457 -9.8806 -7.8171 26 1 0.0344 -8.1408 -8.5719 27 6 1.8109 -5.8738 -3.0056 28 6 1.1346 -4.7526 -0.8585 29 1 -0.3634 0.0892 1.0238 30 1 -0.3634 0.8421 -0.5891 31 1 -0.3634 -0.9312 -0.4346 32 1 5.2788 0.1915 0.0015 33 1 4.2059 -2.0478 0.0134 34 1 3.3878 -2.3383 -1.6741 35 1 3.1703 -3.9517 -2.3923 36 1 1.1725 -1.6742 -2.7908 37 1 2.5263 -1.9726 -3.9027 38 1 0.5490 -3.0010 -4.7335 39 1 1.7263 -4.2312 -4.2546 40 1 -0.7996 -4.5426 -3.6361 41 1 -0.4306 -3.4044 -2.3164 42 1 -1.3632 -6.1043 -2.1584 43 1 -0.1975 -6.8689 -1.0353 44 1 0.3977 -8.3749 -2.6574 45 1 -0.8043 -7.6462 -3.7599 46 1 -0.7715 -9.3477 -5.8455 47 1 2.4948 -6.3851 -2.3283 48 1 2.3363 -5.1122 -3.5821 49 1 0.2909 -4.6976 -0.1707 50 1 1.8636 -5.4624 -0.4673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045950980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:21 Heat of formation + Delta-G solvation = 75.913316 kcal Electronic energy + Delta-G solvation = -32105.120411 eV Core-core repulsion = 28134.595620 eV Total energy + Delta-G solvation = -3970.524791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78777 -40.49038 -38.74357 -36.24545 -34.21057 -34.00581 -33.43684 -32.95085 -30.64435 -28.90431 -28.65676 -27.45502 -26.22448 -25.27041 -25.04779 -23.42292 -23.03243 -21.71750 -20.08599 -19.72369 -18.26093 -18.14055 -17.39346 -17.10399 -16.62767 -16.27576 -15.63649 -15.53318 -15.30430 -14.78371 -14.53464 -14.28019 -13.99141 -13.70734 -13.53230 -13.31024 -13.22659 -13.15077 -13.02492 -12.68043 -12.47434 -12.06411 -11.87574 -11.83471 -11.49243 -11.30916 -11.14672 -10.92063 -10.88912 -10.73024 -10.57743 -10.44142 -10.20175 -10.13914 -10.06646 -9.91423 -9.77368 -9.70695 -9.63280 -9.32040 -8.73267 -8.71084 -6.91783 -5.71205 -3.12132 0.12437 0.50121 2.27308 2.70798 3.17114 3.34770 3.40014 3.42813 3.64693 3.94426 4.00732 4.15736 4.42551 4.44282 4.69996 4.82912 4.85031 4.87657 5.06420 5.10652 5.13749 5.18652 5.33184 5.36481 5.45028 5.47309 5.55525 5.60108 5.61491 5.69220 5.74067 5.82435 5.87465 5.93585 5.96122 6.06146 6.16074 6.20743 6.31410 6.34176 6.41271 6.58640 6.62731 6.79706 6.87629 6.92716 7.14715 7.45955 7.53223 7.79268 7.82731 8.29798 8.32791 9.13775 9.75369 10.45158 11.33503 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.003017 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.341377 B = 9278.126146 C = 9809.464047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.113 3.887 3 N -0.241 5.241 4 N -0.229 5.229 5 C 0.031 3.969 6 C -0.087 4.087 7 C -0.116 4.116 8 C 0.558 3.442 9 O -0.523 6.523 10 N -0.583 5.583 11 C 0.090 3.910 12 C -0.127 4.127 13 C -0.145 4.145 14 C -0.081 4.081 15 C -0.082 4.082 16 C -0.129 4.129 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.219 4.219 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.911 3.089 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.120 3.880 28 C 0.124 3.876 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.179 0.821 33 H 0.158 0.842 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.009 0.991 45 H 0.104 0.896 46 H 0.251 0.749 47 H 0.018 0.982 48 H 0.071 0.929 49 H 0.090 0.910 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.141 14.389 9.839 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.031 4.031 3 N -0.085 5.085 4 N -0.070 5.070 5 C -0.133 4.133 6 C -0.116 4.116 7 C -0.130 4.130 8 C 0.344 3.656 9 O -0.399 6.399 10 N -0.314 5.314 11 C -0.033 4.033 12 C -0.166 4.166 13 C -0.181 4.181 14 C -0.119 4.119 15 C -0.085 4.085 16 C -0.168 4.168 17 C 0.021 3.979 18 N -0.320 5.320 19 C -0.347 4.347 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.006 4.006 28 C 0.003 3.997 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.196 0.804 33 H 0.175 0.825 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.122 0.878 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.088 0.912 49 H 0.108 0.892 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.591 15.719 10.055 19.480 hybrid contribution 0.499 -1.950 -0.911 2.209 sum 6.090 13.769 9.145 17.615 Atomic orbital electron populations 1.20765 0.86735 1.04206 1.04437 1.23002 0.99325 0.88649 0.92099 1.73044 1.01582 1.23885 1.09960 1.72878 0.99538 1.27748 1.06848 1.24279 1.02748 0.89159 0.97072 1.22606 0.93771 1.00564 0.94665 1.21131 0.94924 0.95752 1.01231 1.18029 0.82230 0.82864 0.82515 1.90810 1.32932 1.78422 1.37748 1.47652 1.46330 1.13814 1.23641 1.22014 0.92159 1.01569 0.87548 1.21182 0.99260 0.98693 0.97436 1.20849 0.99411 0.99087 0.98802 1.20811 0.97781 0.95744 0.97543 1.21454 0.98151 0.95670 0.93201 1.22719 0.97879 0.96224 1.00001 1.21686 0.94390 0.91016 0.90760 1.44765 1.33660 1.44665 1.08914 1.19053 1.11911 1.18008 0.85778 0.90477 1.24765 0.98332 0.99018 0.98442 1.69786 1.21994 1.29619 1.35360 0.86060 0.77482 0.77803 0.84505 1.20574 1.21814 1.21780 1.22415 0.93019 0.92521 0.92632 1.22182 0.98199 0.80671 0.98634 0.88975 0.89605 0.90028 0.80416 0.82453 0.90631 0.88806 0.92740 0.91124 0.92709 0.88416 0.91165 0.93318 0.92192 0.92852 0.97292 0.87791 0.93783 0.96445 0.91182 0.89202 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 9.56 36.01 0.34 -0.70 16 2 C 0.11 1.31 6.91 -82.00 -0.57 0.74 16 3 N -0.24 -3.01 11.42 33.81 0.39 -2.62 16 4 N -0.23 -2.62 11.48 30.53 0.35 -2.27 16 5 C 0.03 0.25 11.30 -17.42 -0.20 0.05 16 6 C -0.09 -0.71 7.74 -38.78 -0.30 -1.01 16 7 C -0.12 -1.26 4.91 -104.57 -0.51 -1.77 16 8 C 0.56 7.03 6.10 -12.19 -0.07 6.96 16 9 O -0.52 -8.10 15.42 5.36 0.08 -8.02 16 10 N -0.58 -6.95 2.30 -173.81 -0.40 -7.34 16 11 C 0.09 0.93 5.16 -4.18 -0.02 0.91 16 12 C -0.13 -1.42 5.71 -28.71 -0.16 -1.59 16 13 C -0.14 -2.04 5.02 -29.63 -0.15 -2.19 16 14 C -0.08 -1.26 4.89 -27.98 -0.14 -1.39 16 15 C -0.08 -1.30 0.57 -154.17 -0.09 -1.39 16 16 C -0.13 -2.29 5.91 -25.64 -0.15 -2.44 16 17 C 0.15 3.36 6.01 -2.89 -0.02 3.34 16 18 N -0.60 -13.92 3.36 -169.50 -0.57 -14.49 16 19 C -0.22 -5.69 10.37 -15.06 -0.16 -5.84 16 20 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -25.90 10.21 55.49 0.57 -25.33 16 23 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 C 0.12 2.16 4.52 -2.40 -0.01 2.15 16 28 C 0.12 1.69 4.83 -3.07 -0.01 1.68 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.08 0.89 6.69 -51.93 -0.35 0.54 16 32 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.16 0.88 7.51 -52.49 -0.39 0.48 16 34 H 0.08 0.61 4.27 -51.93 -0.22 0.39 16 35 H 0.09 0.99 5.77 -51.93 -0.30 0.69 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.57 4.42 -51.93 -0.23 1.34 16 40 H 0.07 1.25 7.69 -51.93 -0.40 0.85 16 41 H 0.05 0.72 7.58 -51.93 -0.39 0.32 16 42 H 0.06 1.04 7.71 -51.92 -0.40 0.64 16 43 H 0.05 0.86 7.78 -51.93 -0.40 0.46 16 44 H 0.01 0.22 8.14 -51.92 -0.42 -0.20 16 45 H 0.10 2.72 5.87 -51.93 -0.30 2.42 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.02 0.32 7.65 -51.93 -0.40 -0.07 16 48 H 0.07 1.19 3.45 -51.92 -0.18 1.01 16 49 H 0.09 1.31 6.83 -51.93 -0.35 0.95 16 50 H 0.07 0.89 7.63 -51.93 -0.40 0.50 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -31.05 373.97 -8.51 -39.56 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.23 Total: 1.48 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.31 Total: -2.85 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.34 Total: -52.06 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.08 Total: -8.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.05 -8.51 -39.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045950980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.473 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds