Wall clock time and date at job start Wed Apr 1 2020 03:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31922 * 120.17163 * 2 1 4 4 N 1.28278 * 122.32476 * 179.97438 * 3 2 1 5 5 C 1.31914 * 122.51905 * 359.97438 * 4 3 2 6 6 C 1.38505 * 119.96533 * 359.72786 * 5 4 3 7 7 C 1.39729 * 120.17335 * 179.97438 * 2 1 3 8 8 C 1.48141 * 121.14165 * 0.02562 * 7 2 1 9 9 O 1.21510 * 120.00264 * 305.11052 * 8 7 2 10 10 N 1.34777 * 119.99640 * 125.10709 * 8 7 2 11 11 C 1.44579 * 118.78960 * 354.39251 * 10 8 7 12 12 C 1.54687 * 109.62530 * 270.63985 * 11 10 8 13 13 C 1.47015 * 110.64328 * 288.15533 * 12 11 10 14 14 C 1.52945 * 114.31054 * 62.91068 * 13 12 11 15 15 C 1.50554 * 109.11156 * 276.10885 * 14 13 12 16 16 C 1.53945 * 111.50389 * 214.30706 * 15 14 13 17 17 C 1.54138 * 104.89417 * 98.52212 * 16 15 14 18 18 N 1.47517 * 107.06957 * 358.24602 * 17 16 15 19 19 C 1.36945 * 126.98778 * 205.32898 * 18 17 16 20 20 H 1.07993 * 120.00152 * 179.97438 * 19 18 17 21 21 C 1.38807 * 119.99813 * 359.96312 * 19 18 17 22 22 N 1.31620 * 120.00205 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00134 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46829 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47083 * 119.99969 * 23 21 19 26 26 H 1.48498 * 109.47087 * 240.00653 * 23 21 19 27 27 C 1.48218 * 106.02495 * 25.29995 * 18 17 16 28 28 C 1.47591 * 118.78762 * 174.40795 * 10 8 7 29 29 H 1.08999 * 109.47298 * 274.98118 * 1 2 3 30 30 H 1.09009 * 109.47339 * 34.97485 * 1 2 3 31 31 H 1.08996 * 109.47356 * 154.97811 * 1 2 3 32 32 H 1.07998 * 120.01711 * 179.97438 * 5 4 3 33 33 H 1.08002 * 121.09151 * 180.28963 * 6 5 4 34 34 H 1.08996 * 109.44401 * 30.68441 * 11 10 8 35 35 H 1.08991 * 109.44560 * 150.59294 * 11 10 8 36 36 H 1.09000 * 109.24529 * 48.46024 * 12 11 10 37 37 H 1.09005 * 109.23729 * 167.85637 * 12 11 10 38 38 H 1.09005 * 108.51713 * 184.15291 * 13 12 11 39 39 H 1.09005 * 108.51422 * 301.80271 * 13 12 11 40 40 H 1.08999 * 109.51608 * 156.21831 * 14 13 12 41 41 H 1.09003 * 109.53131 * 36.00295 * 14 13 12 42 42 H 1.09008 * 110.35409 * 339.66989 * 16 15 14 43 43 H 1.09004 * 110.35669 * 217.38437 * 16 15 14 44 44 H 1.09008 * 109.91225 * 117.59804 * 17 16 15 45 45 H 1.09000 * 109.92240 * 238.88490 * 17 16 15 46 46 H 0.97007 * 120.00263 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.66639 * 79.86258 * 27 18 17 48 48 H 1.09010 * 110.66369 * 202.99496 * 27 18 17 49 49 H 1.09000 * 108.98785 * 17.44598 * 28 10 8 50 50 H 1.09004 * 108.99020 * 258.70559 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1700 1.1405 0.0000 4 7 3.4519 1.1887 0.0005 5 6 4.2023 0.1038 0.0015 6 6 3.6091 -1.1477 0.0078 7 6 2.2093 -1.2080 0.0005 8 6 1.4982 -2.5076 0.0006 9 8 0.6753 -2.7499 0.8611 10 7 1.7641 -3.4211 -0.9540 11 6 2.6551 -3.0605 -2.0340 12 6 1.8417 -2.4355 -3.1919 13 6 1.0485 -3.4631 -3.8819 14 6 -0.0089 -4.1362 -3.0055 15 6 0.6349 -5.2506 -2.2243 16 6 -0.3320 -6.4317 -2.0247 17 6 0.0536 -7.4484 -3.1172 18 7 1.1437 -6.8438 -3.9060 19 6 1.4721 -7.1218 -5.2061 20 1 2.2977 -6.6083 -5.6762 21 6 0.7440 -8.0639 -5.9196 22 7 -0.2624 -8.6896 -5.3468 23 14 1.1923 -8.4437 -7.6928 24 1 2.3535 -7.6119 -8.0988 25 1 1.5457 -9.8806 -7.8171 26 1 0.0344 -8.1408 -8.5719 27 6 1.8109 -5.8738 -3.0056 28 6 1.1346 -4.7526 -0.8585 29 1 -0.3634 0.0892 1.0238 30 1 -0.3634 0.8421 -0.5891 31 1 -0.3634 -0.9312 -0.4346 32 1 5.2788 0.1915 0.0015 33 1 4.2059 -2.0478 0.0134 34 1 3.3878 -2.3383 -1.6741 35 1 3.1703 -3.9517 -2.3923 36 1 1.1725 -1.6742 -2.7908 37 1 2.5263 -1.9726 -3.9027 38 1 0.5490 -3.0010 -4.7335 39 1 1.7263 -4.2312 -4.2546 40 1 -0.7996 -4.5426 -3.6361 41 1 -0.4306 -3.4044 -2.3164 42 1 -1.3632 -6.1043 -2.1584 43 1 -0.1975 -6.8689 -1.0353 44 1 0.3977 -8.3749 -2.6574 45 1 -0.8043 -7.6462 -3.7599 46 1 -0.7715 -9.3477 -5.8455 47 1 2.4948 -6.3851 -2.3283 48 1 2.3363 -5.1122 -3.5821 49 1 0.2909 -4.6976 -0.1707 50 1 1.8636 -5.4624 -0.4673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045950980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:20 Heat of formation + Delta-G solvation = 57.551974 kcal Electronic energy + Delta-G solvation = -32105.916619 eV Core-core repulsion = 28134.595620 eV Total energy + Delta-G solvation = -3971.320999 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63417 -41.54075 -39.93897 -37.51355 -35.29022 -34.95847 -34.56466 -34.14527 -32.31496 -30.42955 -29.47623 -28.58878 -27.56269 -26.50872 -26.21965 -24.47679 -24.08519 -22.99513 -21.65170 -20.71583 -19.48452 -19.04016 -18.73560 -18.37989 -17.76218 -17.07620 -16.76129 -16.59891 -16.53212 -16.17640 -15.54192 -15.50295 -15.19209 -15.02538 -14.65044 -14.51195 -14.37029 -14.12152 -13.97393 -13.82418 -13.56800 -13.39387 -13.29467 -13.11219 -12.94851 -12.76541 -12.55011 -12.25390 -12.06838 -12.01640 -11.94173 -11.77152 -11.62558 -11.45537 -11.31198 -11.19193 -11.07693 -10.81369 -10.71235 -10.69082 -10.55504 -9.72888 -8.85059 -7.73091 -5.14722 -0.62721 -0.18737 1.33615 1.48288 1.48726 1.58124 1.76619 2.42587 2.52189 2.92780 3.10611 3.29108 3.38440 3.50944 3.54689 3.74559 3.80444 3.82471 3.92357 4.00335 4.04337 4.20925 4.23627 4.34402 4.40310 4.46897 4.51427 4.56173 4.57579 4.61869 4.62628 4.78461 4.83236 4.86392 4.90004 4.92586 4.98917 5.02138 5.12361 5.15090 5.17585 5.26537 5.35891 5.39362 5.51956 5.60360 5.65117 5.67951 5.85768 6.20147 6.35029 6.87151 7.13048 7.59200 7.81595 8.51754 9.30535 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.003017 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.341377 B = 9278.126146 C = 9809.464047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.104 3.896 3 N -0.268 5.268 4 N -0.257 5.257 5 C 0.043 3.957 6 C -0.071 4.071 7 C -0.131 4.131 8 C 0.564 3.436 9 O -0.556 6.556 10 N -0.580 5.580 11 C 0.090 3.910 12 C -0.123 4.123 13 C -0.136 4.136 14 C -0.077 4.077 15 C -0.069 4.069 16 C -0.120 4.120 17 C 0.151 3.849 18 N -0.615 5.615 19 C -0.218 4.218 20 H 0.088 0.912 21 C -0.071 4.071 22 N -0.952 5.952 23 Si 0.971 3.029 24 H -0.262 1.262 25 H -0.299 1.299 26 H -0.298 1.298 27 C 0.120 3.880 28 C 0.134 3.866 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.221 0.779 33 H 0.192 0.808 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.080 0.920 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.073 0.927 44 H -0.019 1.019 45 H 0.066 0.934 46 H 0.243 0.757 47 H 0.026 0.974 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 16.238 10.387 21.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.041 4.041 3 N -0.110 5.110 4 N -0.097 5.097 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.145 4.145 8 C 0.351 3.649 9 O -0.435 6.435 10 N -0.309 5.309 11 C -0.033 4.033 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.115 4.115 15 C -0.071 4.071 16 C -0.159 4.159 17 C 0.026 3.974 18 N -0.340 5.340 19 C -0.347 4.347 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.801 3.199 24 H -0.186 1.186 25 H -0.226 1.226 26 H -0.225 1.225 27 C -0.004 4.004 28 C 0.012 3.988 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.237 0.763 33 H 0.209 0.791 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.091 0.909 44 H -0.001 1.001 45 H 0.084 0.916 46 H 0.052 0.948 47 H 0.043 0.957 48 H 0.107 0.893 49 H 0.101 0.899 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.602 17.625 10.609 22.297 hybrid contribution -0.374 -2.508 -1.050 2.745 sum 8.227 15.116 9.559 19.686 Atomic orbital electron populations 1.20735 0.86663 1.03980 1.04536 1.23091 0.99648 0.88908 0.92490 1.73007 1.02403 1.24400 1.11224 1.72792 0.99410 1.29626 1.07877 1.24926 1.04346 0.88093 0.94731 1.23020 0.92640 1.02010 0.92340 1.21016 0.96169 0.94328 1.02989 1.18211 0.81639 0.83214 0.81834 1.90799 1.34455 1.79121 1.39080 1.47611 1.46266 1.13046 1.24025 1.22167 0.92050 1.02403 0.86680 1.21139 0.99353 0.97636 0.98038 1.20752 0.98712 0.99161 0.98611 1.20748 0.97534 0.95835 0.97400 1.21268 0.96586 0.94828 0.94396 1.22576 0.98473 0.95847 0.99027 1.21439 0.93042 0.91663 0.91306 1.45009 1.34377 1.45620 1.08952 1.19458 1.11331 1.17009 0.86949 0.89451 1.25541 0.98881 0.99827 1.02076 1.70043 1.23313 1.30433 1.36430 0.85098 0.77373 0.77143 0.80309 1.18641 1.22616 1.22511 1.22636 0.93622 0.91897 0.92250 1.21926 0.98521 0.81950 0.96434 0.88990 0.88696 0.91063 0.76266 0.79073 0.87675 0.88526 0.92875 0.89018 0.93293 0.90177 0.94320 0.92517 0.92114 0.90868 1.00075 0.91590 0.94755 0.95671 0.89347 0.89870 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.56 71.24 0.68 -1.31 16 2 C 0.10 2.22 6.91 42.91 0.30 2.52 16 3 N -0.27 -6.25 11.42 -46.95 -0.54 -6.79 16 4 N -0.26 -5.19 11.48 -57.34 -0.66 -5.85 16 5 C 0.04 0.51 11.30 84.74 0.96 1.47 16 6 C -0.07 -0.83 7.74 22.79 0.18 -0.66 16 7 C -0.13 -2.46 4.91 -19.83 -0.10 -2.56 16 8 C 0.56 12.83 6.10 86.87 0.53 13.36 16 9 O -0.56 -16.46 15.42 -3.75 -0.06 -16.51 16 10 N -0.58 -12.07 2.30 -822.11 -1.89 -13.95 16 11 C 0.09 1.48 5.16 87.31 0.45 1.93 16 12 C -0.12 -2.37 5.71 29.31 0.17 -2.20 16 13 C -0.14 -3.60 5.02 28.72 0.14 -3.45 16 14 C -0.08 -2.35 4.89 29.78 0.15 -2.20 16 15 C -0.07 -2.09 0.57 -51.96 -0.03 -2.12 16 16 C -0.12 -4.28 5.91 31.30 0.19 -4.10 16 17 C 0.15 7.18 6.01 86.57 0.52 7.71 16 18 N -0.62 -28.98 3.36 -690.19 -2.32 -31.29 16 19 C -0.22 -11.36 10.37 84.03 0.87 -10.49 16 20 H 0.09 4.26 7.83 -2.91 -0.02 4.24 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 22 N -0.95 -55.87 10.21 21.65 0.22 -55.65 16 23 Si 0.97 44.35 29.55 68.60 2.03 46.37 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 27 C 0.12 4.16 4.52 86.50 0.39 4.55 16 28 C 0.13 3.33 4.83 86.41 0.42 3.75 16 29 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.07 1.53 6.69 -2.39 -0.02 1.51 16 32 H 0.22 0.59 8.06 -2.91 -0.02 0.56 16 33 H 0.19 0.93 7.51 -2.91 -0.02 0.91 16 34 H 0.11 1.15 4.27 -2.39 -0.01 1.14 16 35 H 0.10 1.61 5.77 -2.39 -0.01 1.60 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 2.43 4.42 -2.38 -0.01 2.42 16 40 H 0.04 1.41 7.69 -2.39 -0.02 1.39 16 41 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 42 H 0.06 2.15 7.71 -2.38 -0.02 2.13 16 43 H 0.07 2.31 7.78 -2.39 -0.02 2.29 16 44 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 45 H 0.07 3.66 5.87 -2.39 -0.01 3.65 16 46 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 47 H 0.03 0.87 7.65 -2.39 -0.02 0.85 16 48 H 0.09 2.78 3.45 -2.38 -0.01 2.77 16 49 H 0.08 2.27 6.83 -2.39 -0.02 2.25 16 50 H 0.08 1.85 7.63 -2.38 -0.02 1.83 16 Total: -1.00 -71.00 373.97 4.03 -66.96 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.97 Total: 13.94 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.27 Total: 2.77 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -5.18 Total: -113.53 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.06 Total: -16.51 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -71.00 4.03 -66.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045950980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.516 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds