Wall clock time and date at job start Wed Apr 1 2020 03:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.46034 * 2 1 4 4 C 1.38358 * 119.30271 * 180.02562 * 3 2 1 5 5 C 1.40023 * 118.28722 * 359.97438 * 4 3 2 6 6 C 1.47840 * 120.55723 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00028 * 327.04454 * 6 5 4 8 8 N 1.34772 * 119.99941 * 147.04577 * 6 5 4 9 9 C 1.47086 * 120.88173 * 354.70130 * 8 6 5 10 10 C 1.53235 * 108.52243 * 231.20852 * 9 8 6 11 11 N 1.46909 * 109.33614 * 306.16968 * 10 9 8 12 12 C 1.46902 * 110.99641 * 187.25580 * 11 10 9 13 13 H 1.09001 * 110.64144 * 298.31117 * 12 11 10 14 14 C 1.55152 * 110.71759 * 174.97592 * 12 11 10 15 15 C 1.54912 * 101.57997 * 206.13275 * 14 12 11 16 16 N 1.47415 * 104.83318 * 37.01056 * 15 14 12 17 17 C 1.36944 * 125.65094 * 155.89423 * 16 15 14 18 18 H 1.07997 * 120.00084 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99939 * 359.97327 * 17 16 15 20 20 N 1.31616 * 119.99846 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47262 * 60.00015 * 21 19 17 23 23 H 1.48499 * 109.47482 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47104 * 299.99864 * 21 19 17 25 25 C 1.47023 * 108.70677 * 335.86934 * 16 15 14 26 26 C 1.46893 * 111.26821 * 63.10538 * 11 10 9 27 27 C 1.47082 * 120.88510 * 174.72280 * 8 6 5 28 28 C 1.39524 * 118.88168 * 0.28171 * 5 4 3 29 29 N 1.31690 * 120.56375 * 359.39896 * 28 5 4 30 30 H 1.08999 * 109.47207 * 90.00297 * 1 2 3 31 31 H 1.09000 * 109.47083 * 210.00528 * 1 2 3 32 32 H 1.09005 * 109.47051 * 330.00068 * 1 2 3 33 33 H 1.08001 * 120.34765 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.85593 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.62724 * 111.49413 * 9 8 6 36 36 H 1.08996 * 109.78566 * 351.01177 * 9 8 6 37 37 H 1.08993 * 109.49546 * 186.21288 * 10 9 8 38 38 H 1.08996 * 109.51736 * 66.13780 * 10 9 8 39 39 H 1.09000 * 111.01011 * 88.06075 * 14 12 11 40 40 H 1.09000 * 111.00771 * 324.20732 * 14 12 11 41 41 H 1.08999 * 110.36528 * 278.16812 * 15 14 12 42 42 H 1.09003 * 110.36604 * 155.85105 * 15 14 12 43 43 H 0.96993 * 120.00095 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.88455 * 120.47544 * 25 16 15 45 45 H 1.08998 * 109.88564 * 241.49122 * 25 16 15 46 46 H 1.08998 * 109.49430 * 56.86084 * 26 11 10 47 47 H 1.09005 * 109.49176 * 176.93219 * 26 11 10 48 48 H 1.08998 * 109.62882 * 248.50673 * 27 8 6 49 49 H 1.09005 * 109.62186 * 9.08081 * 27 8 6 50 50 H 1.07995 * 119.71284 * 179.72319 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0967 -0.0005 7 8 6.3529 0.7601 -0.5732 8 7 6.3400 -1.1037 0.6344 9 6 5.5867 -2.0852 1.4298 10 6 6.2317 -2.1864 2.8160 11 7 7.6641 -2.4764 2.6661 12 6 8.2847 -2.7511 3.9689 13 1 8.2070 -1.8821 4.6224 14 6 9.7655 -3.1791 3.7922 15 6 9.9958 -4.0344 5.0631 16 7 8.7247 -4.7515 5.2708 17 6 8.5756 -5.9315 5.9496 18 1 7.5973 -6.3784 6.0473 19 6 9.6820 -6.5532 6.5121 20 7 10.8741 -6.0083 6.3934 21 14 9.4788 -8.1631 7.4373 22 1 8.9151 -9.1905 6.5253 23 1 10.8015 -8.6174 7.9367 24 1 8.5584 -7.9615 8.5852 25 6 7.6432 -3.9898 4.6291 26 6 8.3590 -1.3842 1.9717 27 6 7.8012 -1.2502 0.5508 28 6 3.4716 -1.2043 -0.0060 29 7 2.1559 -1.1487 0.0009 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6443 2.1381 -0.0004 34 1 4.1275 2.1264 -0.0010 35 1 5.6201 -3.0576 0.9384 36 1 4.5509 -1.7613 1.5306 37 1 5.7557 -2.9877 3.3811 38 1 6.1053 -1.2425 3.3463 39 1 10.4246 -2.3110 3.7808 40 1 9.8943 -3.7773 2.8901 41 1 10.2138 -3.3935 5.9173 42 1 10.8088 -4.7424 4.9017 43 1 11.6472 -6.4424 6.7867 44 1 7.1567 -4.6036 3.8711 45 1 6.9145 -3.6783 5.3774 46 1 8.2030 -0.4513 2.5133 47 1 9.4256 -1.6038 1.9245 48 1 8.0474 -2.1423 -0.0250 49 1 8.2303 -0.3709 0.0703 50 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046005156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:54 Heat of formation + Delta-G solvation = 57.999131 kcal Electronic energy + Delta-G solvation = -30225.463245 eV Core-core repulsion = 26254.161637 eV Total energy + Delta-G solvation = -3971.301608 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25749 -39.81490 -38.53900 -36.71389 -34.51992 -33.51322 -32.80864 -31.97019 -31.40857 -29.42326 -28.50139 -27.85864 -26.05202 -24.65030 -23.94441 -23.69685 -22.96373 -21.50469 -20.04420 -19.85686 -19.41616 -17.96629 -17.09631 -16.88609 -16.38939 -16.28966 -15.70177 -15.35175 -14.92823 -14.82620 -14.75616 -14.55953 -14.47942 -13.98304 -13.90421 -13.57565 -13.24600 -13.12098 -12.83751 -12.75453 -12.54320 -12.39281 -12.23109 -11.88164 -11.67968 -11.58195 -11.36935 -11.30105 -10.94150 -10.80050 -10.49192 -10.32963 -10.24166 -10.16223 -10.07172 -9.83008 -9.77854 -9.56779 -9.33457 -8.94323 -8.63975 -8.18323 -6.82462 -5.64424 -3.06076 0.28940 0.79158 2.43701 2.64526 3.33850 3.41214 3.45193 3.46589 3.74831 3.91852 4.13485 4.25055 4.39385 4.50614 4.54499 4.70720 4.83153 4.87697 4.99185 5.07015 5.10119 5.14685 5.18374 5.22080 5.30102 5.43423 5.46498 5.52902 5.56112 5.57677 5.62892 5.65572 5.69258 5.75879 5.82371 5.86127 5.96233 6.13846 6.23061 6.33107 6.54301 6.54535 6.63731 6.68488 7.07837 7.16138 7.37402 7.46033 7.51968 7.63131 7.82728 7.86180 8.37091 9.22774 9.83821 10.48550 11.39550 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.002254 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.784335 B =12417.948286 C =13666.853156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.146 3.854 3 C -0.179 4.179 4 C -0.017 4.017 5 C -0.191 4.191 6 C 0.566 3.434 7 O -0.538 6.538 8 N -0.604 5.604 9 C 0.097 3.903 10 C 0.039 3.961 11 N -0.525 5.525 12 C 0.072 3.928 13 H 0.042 0.958 14 C -0.134 4.134 15 C 0.153 3.847 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.147 3.853 26 C 0.042 3.958 27 C 0.118 3.882 28 C 0.134 3.866 29 N -0.486 5.486 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.010 0.990 42 H 0.108 0.892 43 H 0.252 0.748 44 H 0.035 0.965 45 H 0.015 0.985 46 H 0.034 0.966 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 14.808 -13.996 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.009 3.991 3 C -0.199 4.199 4 C -0.043 4.043 5 C -0.196 4.196 6 C 0.353 3.647 7 O -0.416 6.416 8 N -0.336 5.336 9 C -0.025 4.025 10 C -0.090 4.090 11 N -0.250 5.250 12 C -0.036 4.036 13 H 0.060 0.940 14 C -0.173 4.173 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.572 5.572 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.020 3.980 26 C -0.087 4.087 27 C -0.004 4.004 28 C -0.024 4.024 29 N -0.196 5.196 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.028 0.972 42 H 0.126 0.874 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.033 0.967 46 H 0.053 0.947 47 H 0.112 0.888 48 H 0.098 0.902 49 H 0.113 0.887 50 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.195 13.910 -14.452 25.781 hybrid contribution 0.341 0.737 1.153 1.411 sum -15.854 14.647 -13.299 25.353 Atomic orbital electron populations 1.20800 0.88357 1.03939 1.03460 1.21581 0.97433 0.88314 0.91729 1.21959 0.94417 0.99654 1.03873 1.21667 0.94152 0.97587 0.90931 1.20934 0.94525 0.95755 1.08408 1.18080 0.86723 0.81058 0.78796 1.90777 1.67230 1.38452 1.45161 1.48082 1.08400 1.27834 1.49315 1.22426 0.95655 0.92716 0.91741 1.22483 0.89948 1.00832 0.95720 1.62030 1.01474 1.40069 1.21428 1.22706 0.96285 0.97197 0.87448 0.93983 1.23092 0.92777 0.99500 1.01916 1.21924 0.91421 0.93556 0.90321 1.44421 1.02267 1.23151 1.63055 1.19020 0.93962 0.96163 1.25794 0.90559 1.24785 0.95420 0.99295 1.01219 1.69777 0.98162 1.39535 1.49710 0.86143 0.76617 0.83127 0.79551 1.21130 1.21593 1.21266 1.21221 0.91661 0.90883 0.94202 1.22453 0.99753 0.92735 0.93734 1.21812 0.78220 1.03149 0.97219 1.23357 0.89316 0.97990 0.91724 1.67618 1.09375 1.29088 1.13473 0.89945 0.90005 0.90380 0.84016 0.83823 0.89583 0.88866 0.88702 0.94683 0.92805 0.91039 0.97226 0.87418 0.93690 0.94710 0.96679 0.94740 0.88842 0.90160 0.88651 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.01 0.37 -0.18 16 2 C 0.15 1.19 6.78 -82.51 -0.56 0.63 16 3 C -0.18 -1.31 9.72 -39.50 -0.38 -1.69 16 4 C -0.02 -0.15 9.75 -38.87 -0.38 -0.53 16 5 C -0.19 -1.99 5.37 -104.82 -0.56 -2.55 16 6 C 0.57 6.97 7.44 -12.33 -0.09 6.88 16 7 O -0.54 -8.21 16.29 5.32 0.09 -8.12 16 8 N -0.60 -6.82 3.01 -173.58 -0.52 -7.34 16 9 C 0.10 0.97 4.89 -3.60 -0.02 0.95 16 10 C 0.04 0.47 5.45 -3.70 -0.02 0.45 16 11 N -0.52 -7.43 4.45 -224.16 -1.00 -8.42 16 12 C 0.07 1.24 2.65 -65.88 -0.17 1.06 16 13 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 14 C -0.13 -2.50 5.38 -24.58 -0.13 -2.63 16 15 C 0.15 3.70 5.89 -2.53 -0.01 3.68 16 16 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 17 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 21 Si 0.92 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.15 3.03 5.70 -3.06 -0.02 3.01 16 26 C 0.04 0.52 5.47 -3.71 -0.02 0.50 16 27 C 0.12 1.34 6.61 -3.60 -0.02 1.32 16 28 C 0.13 1.29 8.57 -17.13 -0.15 1.14 16 29 N -0.49 -4.83 10.25 -9.14 -0.09 -4.93 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 33 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 1.19 8.03 -52.49 -0.42 0.76 16 35 H 0.09 0.80 7.98 -51.93 -0.41 0.39 16 36 H 0.09 0.82 4.51 -51.93 -0.23 0.59 16 37 H 0.09 1.17 6.78 -51.93 -0.35 0.82 16 38 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.89 7.93 -51.93 -0.41 0.47 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.11 2.93 5.87 -51.93 -0.31 2.62 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 1.14 6.80 -51.93 -0.35 0.79 16 48 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.10 1.11 7.04 -51.93 -0.37 0.75 16 50 H 0.17 1.38 5.78 -52.49 -0.30 1.08 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -32.96 387.92 -10.91 -43.87 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.75 Total: -0.91 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.43 Total: 5.31 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -1.63 Total: -62.98 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.96 -10.91 -43.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046005156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.869 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds