Wall clock time and date at job start Wed Apr 1 2020 03:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38349 * 119.46034 * 2 1 4 4 C 1.38358 * 119.30271 * 180.02562 * 3 2 1 5 5 C 1.40023 * 118.28722 * 359.97438 * 4 3 2 6 6 C 1.47840 * 120.55723 * 180.02562 * 5 4 3 7 7 O 1.21553 * 120.00028 * 327.04454 * 6 5 4 8 8 N 1.34772 * 119.99941 * 147.04577 * 6 5 4 9 9 C 1.47086 * 120.88173 * 354.70130 * 8 6 5 10 10 C 1.53235 * 108.52243 * 231.20852 * 9 8 6 11 11 N 1.46909 * 109.33614 * 306.16968 * 10 9 8 12 12 C 1.46902 * 110.99641 * 187.25580 * 11 10 9 13 13 H 1.09001 * 110.64144 * 298.31117 * 12 11 10 14 14 C 1.55152 * 110.71759 * 174.97592 * 12 11 10 15 15 C 1.54912 * 101.57997 * 206.13275 * 14 12 11 16 16 N 1.47415 * 104.83318 * 37.01056 * 15 14 12 17 17 C 1.36944 * 125.65094 * 155.89423 * 16 15 14 18 18 H 1.07997 * 120.00084 * 179.97438 * 17 16 15 19 19 C 1.38812 * 119.99939 * 359.97327 * 17 16 15 20 20 N 1.31616 * 119.99846 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47262 * 60.00015 * 21 19 17 23 23 H 1.48499 * 109.47482 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47104 * 299.99864 * 21 19 17 25 25 C 1.47023 * 108.70677 * 335.86934 * 16 15 14 26 26 C 1.46893 * 111.26821 * 63.10538 * 11 10 9 27 27 C 1.47082 * 120.88510 * 174.72280 * 8 6 5 28 28 C 1.39524 * 118.88168 * 0.28171 * 5 4 3 29 29 N 1.31690 * 120.56375 * 359.39896 * 28 5 4 30 30 H 1.08999 * 109.47207 * 90.00297 * 1 2 3 31 31 H 1.09000 * 109.47083 * 210.00528 * 1 2 3 32 32 H 1.09005 * 109.47051 * 330.00068 * 1 2 3 33 33 H 1.08001 * 120.34765 * 359.97438 * 3 2 1 34 34 H 1.08002 * 120.85593 * 179.97438 * 4 3 2 35 35 H 1.09000 * 109.62724 * 111.49413 * 9 8 6 36 36 H 1.08996 * 109.78566 * 351.01177 * 9 8 6 37 37 H 1.08993 * 109.49546 * 186.21288 * 10 9 8 38 38 H 1.08996 * 109.51736 * 66.13780 * 10 9 8 39 39 H 1.09000 * 111.01011 * 88.06075 * 14 12 11 40 40 H 1.09000 * 111.00771 * 324.20732 * 14 12 11 41 41 H 1.08999 * 110.36528 * 278.16812 * 15 14 12 42 42 H 1.09003 * 110.36604 * 155.85105 * 15 14 12 43 43 H 0.96993 * 120.00095 * 179.97438 * 20 19 17 44 44 H 1.08998 * 109.88455 * 120.47544 * 25 16 15 45 45 H 1.08998 * 109.88564 * 241.49122 * 25 16 15 46 46 H 1.08998 * 109.49430 * 56.86084 * 26 11 10 47 47 H 1.09005 * 109.49176 * 176.93219 * 26 11 10 48 48 H 1.08998 * 109.62882 * 248.50673 * 27 8 6 49 49 H 1.09005 * 109.62186 * 9.08081 * 27 8 6 50 50 H 1.07995 * 119.71284 * 179.72319 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 -0.0005 5 6 4.2312 -0.0340 -0.0005 6 6 5.7083 -0.0967 -0.0005 7 8 6.3529 0.7601 -0.5732 8 7 6.3400 -1.1037 0.6344 9 6 5.5867 -2.0852 1.4298 10 6 6.2317 -2.1864 2.8160 11 7 7.6641 -2.4764 2.6661 12 6 8.2847 -2.7511 3.9689 13 1 8.2070 -1.8821 4.6224 14 6 9.7655 -3.1791 3.7922 15 6 9.9958 -4.0344 5.0631 16 7 8.7247 -4.7515 5.2708 17 6 8.5756 -5.9315 5.9496 18 1 7.5973 -6.3784 6.0473 19 6 9.6820 -6.5532 6.5121 20 7 10.8741 -6.0083 6.3934 21 14 9.4788 -8.1631 7.4373 22 1 8.9151 -9.1905 6.5253 23 1 10.8015 -8.6174 7.9367 24 1 8.5584 -7.9615 8.5852 25 6 7.6432 -3.9898 4.6291 26 6 8.3590 -1.3842 1.9717 27 6 7.8012 -1.2502 0.5508 28 6 3.4716 -1.2043 -0.0060 29 7 2.1559 -1.1487 0.0009 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6443 2.1381 -0.0004 34 1 4.1275 2.1264 -0.0010 35 1 5.6201 -3.0576 0.9384 36 1 4.5509 -1.7613 1.5306 37 1 5.7557 -2.9877 3.3811 38 1 6.1053 -1.2425 3.3463 39 1 10.4246 -2.3110 3.7808 40 1 9.8943 -3.7773 2.8901 41 1 10.2138 -3.3935 5.9173 42 1 10.8088 -4.7424 4.9017 43 1 11.6472 -6.4424 6.7867 44 1 7.1567 -4.6036 3.8711 45 1 6.9145 -3.6783 5.3774 46 1 8.2030 -0.4513 2.5133 47 1 9.4256 -1.6038 1.9245 48 1 8.0474 -2.1423 -0.0250 49 1 8.2303 -0.3709 0.0703 50 1 3.9669 -2.1640 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046005156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:53 Heat of formation + Delta-G solvation = 36.473634 kcal Electronic energy + Delta-G solvation = -30226.396661 eV Core-core repulsion = 26254.161637 eV Total energy + Delta-G solvation = -3972.235024 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.04780 -40.70775 -39.77167 -38.10647 -35.79196 -34.34859 -33.74082 -33.41941 -32.33182 -31.08727 -29.59116 -28.95794 -27.42008 -26.05783 -25.08837 -24.57729 -23.78122 -22.41112 -21.84145 -21.16877 -20.47228 -18.97031 -18.76369 -17.81809 -17.39793 -17.03586 -16.91269 -16.45386 -16.40852 -15.98749 -15.88795 -15.55290 -15.36181 -15.26100 -14.86375 -14.65519 -14.32821 -14.17186 -14.16345 -13.53927 -13.48413 -13.38976 -13.27108 -13.07736 -13.00633 -12.88265 -12.69175 -12.62485 -12.52865 -12.29859 -12.02824 -11.83191 -11.77887 -11.58295 -11.40720 -11.27470 -10.99600 -10.72294 -10.50691 -10.04111 -9.86702 -9.32152 -8.87288 -7.75741 -5.20187 -0.39784 0.14913 1.47967 1.51262 1.56353 1.57501 1.77676 2.49431 2.64041 2.79392 3.12284 3.34686 3.39530 3.65892 3.68135 3.73905 3.75925 3.84687 3.93269 4.01515 4.09035 4.17814 4.24914 4.27826 4.29218 4.35958 4.47215 4.60926 4.61735 4.67913 4.70903 4.73451 4.81034 4.81281 4.88991 4.96239 4.97814 5.02851 5.06568 5.08331 5.12680 5.16909 5.32494 5.47867 5.58261 5.64975 5.81168 6.01069 6.05484 6.22679 6.32873 6.80886 6.91937 7.12173 7.79794 8.43510 9.26177 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017753 B = 0.002254 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.784335 B =12417.948286 C =13666.853156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.140 3.860 3 C -0.171 4.171 4 C -0.026 4.026 5 C -0.208 4.208 6 C 0.566 3.434 7 O -0.574 6.574 8 N -0.603 5.603 9 C 0.105 3.895 10 C 0.039 3.961 11 N -0.527 5.527 12 C 0.090 3.910 13 H 0.043 0.957 14 C -0.116 4.116 15 C 0.154 3.846 16 N -0.626 5.626 17 C -0.238 4.238 18 H 0.081 0.919 19 C -0.069 4.069 20 N -0.950 5.950 21 Si 0.981 3.019 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.279 1.279 25 C 0.146 3.854 26 C 0.046 3.954 27 C 0.122 3.878 28 C 0.132 3.868 29 N -0.507 5.507 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.174 0.826 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.079 0.921 40 H 0.071 0.929 41 H -0.015 1.015 42 H 0.074 0.926 43 H 0.247 0.753 44 H 0.038 0.962 45 H 0.017 0.983 46 H 0.031 0.969 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.551 15.465 -14.863 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.003 3.997 3 C -0.190 4.190 4 C -0.052 4.052 5 C -0.213 4.213 6 C 0.356 3.644 7 O -0.455 6.455 8 N -0.334 5.334 9 C -0.017 4.017 10 C -0.090 4.090 11 N -0.252 5.252 12 C -0.019 4.019 13 H 0.061 0.939 14 C -0.154 4.154 15 C 0.029 3.971 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.099 0.901 19 C -0.261 4.261 20 N -0.600 5.600 21 Si 0.809 3.191 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.205 1.205 25 C 0.021 3.979 26 C -0.082 4.082 27 C 0.000 4.000 28 C -0.026 4.026 29 N -0.217 5.217 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.192 0.808 34 H 0.165 0.835 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.003 0.997 42 H 0.092 0.908 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.049 0.951 47 H 0.116 0.884 48 H 0.107 0.893 49 H 0.111 0.889 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.544 14.570 -15.330 28.127 hybrid contribution 0.964 0.582 1.410 1.805 sum -17.580 15.152 -13.920 27.063 Atomic orbital electron populations 1.20906 0.86198 1.04879 1.04412 1.22162 0.98941 0.88121 0.90480 1.22280 0.93689 1.00786 1.02286 1.21865 0.95142 0.97296 0.90941 1.20859 0.93340 0.96784 1.10359 1.18368 0.87493 0.80479 0.78097 1.90751 1.68145 1.39793 1.46814 1.48144 1.08445 1.27789 1.49058 1.22464 0.95934 0.93011 0.90304 1.22543 0.88673 1.00656 0.97119 1.61979 1.02558 1.41251 1.19433 1.22385 0.94987 0.95686 0.88838 0.93868 1.22866 0.94433 0.99368 0.98776 1.21715 0.90357 0.93085 0.91984 1.44740 1.04063 1.23221 1.63187 1.19409 0.94234 0.97171 1.25846 0.90119 1.25643 0.95243 1.02660 1.02536 1.70037 0.98627 1.40745 1.50544 0.85111 0.76290 0.79276 0.78403 1.20183 1.22018 1.20492 1.21332 0.90700 0.91781 0.94105 1.22460 0.99929 0.91855 0.93977 1.21762 0.78397 1.03405 0.96456 1.23453 0.89410 0.98076 0.91617 1.67675 1.09426 1.30237 1.14347 0.88828 0.90461 0.88074 0.80830 0.83542 0.88405 0.87418 0.88784 0.94859 0.90244 0.91041 0.99736 0.90762 0.94344 0.94437 0.96487 0.95073 0.88400 0.89345 0.88912 0.80444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.16 71.24 0.72 -0.06 16 2 C 0.14 1.94 6.78 42.57 0.29 2.23 16 3 C -0.17 -2.05 9.72 22.32 0.22 -1.84 16 4 C -0.03 -0.44 9.75 22.73 0.22 -0.21 16 5 C -0.21 -4.09 5.37 -19.99 -0.11 -4.20 16 6 C 0.57 13.50 7.44 86.79 0.65 14.15 16 7 O -0.57 -17.39 16.29 -3.88 -0.06 -17.46 16 8 N -0.60 -12.80 3.01 -821.36 -2.47 -15.27 16 9 C 0.11 1.90 4.89 86.35 0.42 2.32 16 10 C 0.04 0.87 5.45 86.38 0.47 1.34 16 11 N -0.53 -14.03 4.45 -863.10 -3.84 -17.88 16 12 C 0.09 3.00 2.65 46.10 0.12 3.12 16 13 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 14 C -0.12 -4.24 5.38 31.99 0.17 -4.06 16 15 C 0.15 7.63 5.89 86.86 0.51 8.14 16 16 N -0.63 -32.43 3.39 -691.99 -2.35 -34.78 16 17 C -0.24 -13.37 10.27 84.03 0.86 -12.51 16 18 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 19 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 20 N -0.95 -56.81 10.09 21.65 0.22 -56.59 16 21 Si 0.98 45.68 29.55 68.60 2.03 47.71 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 C 0.15 5.96 5.70 86.73 0.49 6.45 16 26 C 0.05 1.07 5.47 86.38 0.47 1.55 16 27 C 0.12 2.61 6.61 86.35 0.57 3.18 16 28 C 0.13 2.35 8.57 85.02 0.73 3.08 16 29 N -0.51 -9.22 10.25 -182.82 -1.87 -11.09 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.28 8.07 -2.38 -0.02 0.26 16 33 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.15 2.27 8.03 -2.91 -0.02 2.25 16 35 H 0.10 1.59 7.98 -2.39 -0.02 1.57 16 36 H 0.11 1.70 4.51 -2.39 -0.01 1.69 16 37 H 0.09 2.16 6.78 -2.39 -0.02 2.14 16 38 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 42 H 0.07 4.19 5.87 -2.39 -0.01 4.18 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.04 1.52 7.70 -2.39 -0.02 1.50 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 2.20 6.80 -2.38 -0.02 2.18 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 2.08 7.04 -2.38 -0.02 2.06 16 50 H 0.18 2.63 5.78 -2.91 -0.02 2.61 16 Total: -1.00 -72.57 387.92 -0.13 -72.70 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: 0.94 Total: 13.42 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: 7.28 Total: 19.24 kcal Atomic # 7 Polarization: -125.29 SS G_CDS: -10.32 Total: -135.61 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.06 Total: -17.46 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -72.57 -0.13 -72.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046005156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.175 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds