Wall clock time and date at job start Wed Apr 1 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38633 * 120.46914 * 2 1 4 4 C 1.38583 * 118.48682 * 179.97438 * 3 2 1 5 5 C 1.38603 * 119.35196 * 359.97438 * 4 3 2 6 6 N 1.31494 * 120.89878 * 0.02562 * 5 4 3 7 7 C 1.32749 * 121.64477 * 359.68559 * 6 5 4 8 8 C 1.48169 * 119.72172 * 180.30821 * 7 6 5 9 9 O 1.21512 * 119.99895 * 254.42108 * 8 7 6 10 10 N 1.34774 * 119.99909 * 74.42256 * 8 7 6 11 11 C 1.47085 * 120.88470 * 4.63256 * 10 8 7 12 12 C 1.53690 * 108.27998 * 128.75257 * 11 10 8 13 13 N 1.46897 * 109.25399 * 54.08361 * 12 11 10 14 14 C 1.46904 * 110.99956 * 172.60882 * 13 12 11 15 15 H 1.08999 * 110.64369 * 67.81399 * 14 13 12 16 16 C 1.55154 * 110.72073 * 191.15628 * 14 13 12 17 17 C 1.54912 * 101.58476 * 153.86689 * 16 14 13 18 18 N 1.47424 * 104.82785 * 322.98716 * 17 16 14 19 19 C 1.36940 * 125.64917 * 204.16702 * 18 17 16 20 20 H 1.08003 * 120.00092 * 146.38636 * 19 18 17 21 21 C 1.38812 * 119.99711 * 326.38371 * 19 18 17 22 22 N 1.31623 * 119.99759 * 158.30963 * 21 19 18 23 23 Si 1.86794 * 120.00122 * 338.31618 * 21 19 18 24 24 H 1.48504 * 109.47117 * 87.02230 * 23 21 19 25 25 H 1.48508 * 109.46992 * 207.01560 * 23 21 19 26 26 H 1.48498 * 109.47146 * 327.01806 * 23 21 19 27 27 C 1.47030 * 108.70681 * 24.12820 * 18 17 16 28 28 C 1.46898 * 111.27398 * 296.75698 * 13 12 11 29 29 C 1.47082 * 120.88099 * 184.91050 * 10 8 7 30 30 H 1.09000 * 109.47483 * 86.51529 * 1 2 3 31 31 H 1.09000 * 109.47537 * 206.51769 * 1 2 3 32 32 H 1.09008 * 109.47259 * 326.52009 * 1 2 3 33 33 H 1.07999 * 120.75407 * 359.95149 * 3 2 1 34 34 H 1.07997 * 120.32392 * 180.02562 * 4 3 2 35 35 H 1.08000 * 119.55133 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.62936 * 248.52736 * 11 10 8 37 37 H 1.09004 * 109.62552 * 9.10314 * 11 10 8 38 38 H 1.09004 * 109.64987 * 294.08128 * 12 11 10 39 39 H 1.08998 * 109.44460 * 173.96584 * 12 11 10 40 40 H 1.09008 * 111.00126 * 271.93348 * 16 14 13 41 41 H 1.09001 * 111.00672 * 35.78654 * 16 14 13 42 42 H 1.08998 * 110.36850 * 204.15067 * 17 16 14 43 43 H 1.08996 * 110.46346 * 81.87213 * 17 16 14 44 44 H 0.96999 * 120.00184 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.88503 * 239.52363 * 27 18 17 46 46 H 1.08998 * 109.87866 * 118.35583 * 27 18 17 47 47 H 1.08999 * 109.48876 * 303.14904 * 28 13 12 48 48 H 1.08999 * 109.49468 * 183.06863 * 28 13 12 49 49 H 1.08999 * 109.62863 * 350.89506 * 29 10 8 50 50 H 1.09001 * 109.62997 * 111.28603 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2321 -0.0839 0.0016 6 7 3.5406 -1.2023 0.0016 7 6 2.2131 -1.2003 0.0068 8 6 1.4766 -2.4860 0.0135 9 8 0.9254 -2.8756 -0.9969 10 7 1.4179 -3.2231 1.1402 11 6 1.9906 -2.7239 2.3997 12 6 0.9219 -2.8470 3.4973 13 7 0.4324 -4.2312 3.5439 14 6 -0.4612 -4.4353 4.6919 15 1 -1.3879 -3.8765 4.5616 16 6 -0.7507 -5.9452 4.9006 17 6 -1.0685 -5.9945 6.4159 18 7 -0.1470 -5.0191 7.0266 19 6 0.2796 -5.0305 8.3278 20 1 1.2757 -4.6923 8.5725 21 6 -0.5683 -5.4766 9.3323 22 7 -0.0701 -5.8937 10.4769 23 14 -2.4162 -5.4851 9.0594 24 1 -2.8150 -6.7604 8.4114 25 1 -3.1100 -5.3557 10.3660 26 1 -2.7925 -4.3461 8.1841 27 6 0.2389 -4.0326 6.0070 28 6 -0.2310 -4.6045 2.2875 29 6 0.7850 -4.5508 1.1416 30 1 -0.3634 0.0625 -1.0257 31 1 -0.3634 -0.9195 0.4588 32 1 -0.3634 0.8572 0.5669 33 1 1.6900 2.1415 -0.0008 34 1 4.1721 2.0597 0.0010 35 1 5.3114 -0.1250 0.0025 36 1 2.8639 -3.3193 2.6662 37 1 2.2782 -1.6791 2.2823 38 1 0.0921 -2.1749 3.2780 39 1 1.3588 -2.5830 4.4604 40 1 -1.6103 -6.2634 4.3106 41 1 0.1269 -6.5475 4.6656 42 1 -0.8802 -6.9929 6.8108 43 1 -2.1032 -5.7043 6.5979 44 1 -0.6625 -6.2058 11.1787 45 1 1.3201 -4.0444 5.8701 46 1 -0.0875 -3.0381 6.3112 47 1 -1.0446 -3.9080 2.0850 48 1 -0.6298 -5.6153 2.3731 49 1 0.2752 -4.7144 0.1922 50 1 1.5450 -5.3186 1.2862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046017763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:18 Heat of formation + Delta-G solvation = 48.679624 kcal Electronic energy + Delta-G solvation = -30720.895300 eV Core-core repulsion = 26749.189568 eV Total energy + Delta-G solvation = -3971.705733 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23604 -39.79627 -38.61848 -36.86529 -34.40107 -34.08339 -32.64784 -32.13442 -31.35802 -29.75287 -28.37926 -27.90230 -26.55043 -24.83496 -24.16151 -23.41173 -22.68490 -21.67456 -20.64075 -19.87767 -19.49375 -17.97810 -17.21503 -16.98985 -16.68642 -16.00460 -15.75876 -15.44521 -15.14200 -14.92437 -14.88323 -14.53583 -14.46475 -13.91946 -13.76441 -13.58268 -13.53338 -13.18714 -13.11639 -12.94379 -12.75084 -12.48255 -12.26383 -12.17365 -11.91998 -11.75092 -11.61022 -11.40731 -11.09289 -10.89323 -10.65392 -10.49549 -10.33069 -10.26795 -10.21967 -10.12263 -9.81856 -9.59106 -9.34011 -8.97791 -8.56702 -8.27720 -6.85531 -6.00875 -3.39670 0.45541 0.78581 2.19497 2.60072 3.26407 3.34218 3.45505 3.50915 3.73317 3.87882 4.18254 4.31818 4.49630 4.51051 4.53431 4.67944 4.76086 4.85252 4.93169 5.01943 5.04314 5.07762 5.15869 5.18491 5.18670 5.24534 5.32357 5.39956 5.49704 5.56035 5.57067 5.60211 5.62552 5.66736 5.72525 5.73718 5.88858 5.96086 6.12627 6.16719 6.21544 6.26464 6.49063 6.52451 6.66741 6.80557 7.03873 7.05959 7.25268 7.40904 7.78711 7.87583 8.32462 8.84396 9.65933 10.22721 11.15445 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002476 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.605974 B =11307.375128 C =11827.823703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.099 4.099 3 C -0.077 4.077 4 C -0.155 4.155 5 C 0.096 3.904 6 N -0.453 5.453 7 C 0.094 3.906 8 C 0.582 3.418 9 O -0.531 6.531 10 N -0.598 5.598 11 C 0.120 3.880 12 C 0.038 3.962 13 N -0.524 5.524 14 C 0.069 3.931 15 H 0.046 0.954 16 C -0.120 4.120 17 C 0.120 3.880 18 N -0.604 5.604 19 C -0.246 4.246 20 H 0.084 0.916 21 C 0.034 3.966 22 N -0.903 5.903 23 Si 0.881 3.119 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.275 1.275 27 C 0.140 3.860 28 C 0.042 3.958 29 C 0.117 3.883 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.018 0.982 44 H 0.264 0.736 45 H 0.044 0.956 46 H 0.026 0.974 47 H 0.036 0.964 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.852 13.386 -23.067 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.103 4.103 4 C -0.175 4.175 5 C -0.063 4.063 6 N -0.163 5.163 7 C -0.045 4.045 8 C 0.368 3.632 9 O -0.406 6.406 10 N -0.330 5.330 11 C -0.003 4.003 12 C -0.090 4.090 13 N -0.249 5.249 14 C -0.039 4.039 15 H 0.064 0.936 16 C -0.159 4.159 17 C -0.005 4.005 18 N -0.332 5.332 19 C -0.374 4.374 20 H 0.101 0.899 21 C -0.167 4.167 22 N -0.545 5.545 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.228 1.228 26 H -0.201 1.201 27 C 0.015 3.985 28 C -0.087 4.087 29 C -0.005 4.005 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.110 0.890 49 H 0.114 0.886 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.390 11.982 -23.280 26.548 hybrid contribution -2.119 1.476 -0.025 2.583 sum 2.271 13.459 -23.304 27.007 Atomic orbital electron populations 1.20808 0.89617 1.03392 1.03400 1.20824 0.97799 0.92692 0.98867 1.21489 0.94223 0.97931 0.96645 1.22349 0.95215 0.99916 0.99992 1.22847 1.00553 0.87214 0.95677 1.67656 1.06392 1.31824 1.10410 1.20873 0.90457 0.93200 0.99991 1.17894 0.79407 0.82658 0.83250 1.90794 1.46256 1.70805 1.32777 1.48095 1.57253 1.18354 1.09339 1.21936 0.96661 0.99666 0.82082 1.22601 0.97243 0.89523 0.99676 1.61995 1.38718 1.21979 1.02236 1.22708 0.93410 0.97474 0.90281 0.93601 1.22793 1.01063 0.94751 0.97304 1.21867 0.93372 0.94737 0.90575 1.44615 1.55069 1.25882 1.07605 1.18528 0.97437 1.42006 0.79426 0.89865 1.25391 0.97779 0.98643 0.94836 1.69847 1.34985 1.43311 1.06308 0.86834 0.87691 0.78424 0.76032 1.21054 1.22787 1.20090 1.21434 0.97703 0.92594 0.86797 1.22466 0.94989 1.01979 0.89217 1.21811 0.96292 0.83034 0.99324 0.89995 0.91347 0.90533 0.84074 0.84132 0.81920 0.89734 0.90309 0.94583 0.88465 0.92170 0.90038 0.92458 0.96427 0.92593 0.93841 0.95637 0.94593 0.88982 0.88628 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.69 36.00 0.35 -0.58 16 2 C -0.10 -0.92 5.93 -104.10 -0.62 -1.54 16 3 C -0.08 -0.52 9.87 -39.31 -0.39 -0.91 16 4 C -0.15 -0.94 10.11 -39.32 -0.40 -1.34 16 5 C 0.10 0.75 11.18 -17.56 -0.20 0.56 16 6 N -0.45 -5.07 10.27 -9.80 -0.10 -5.17 16 7 C 0.09 1.09 4.52 -83.01 -0.38 0.71 16 8 C 0.58 7.67 5.73 -12.18 -0.07 7.60 16 9 O -0.53 -8.42 16.56 5.36 0.09 -8.33 16 10 N -0.60 -7.09 3.00 -173.17 -0.52 -7.61 16 11 C 0.12 1.30 6.51 -3.36 -0.02 1.28 16 12 C 0.04 0.45 5.38 -3.47 -0.02 0.43 16 13 N -0.52 -6.94 4.46 -223.86 -1.00 -7.94 16 14 C 0.07 1.10 2.65 -65.88 -0.17 0.93 16 15 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 16 C -0.12 -1.98 5.68 -24.58 -0.14 -2.11 16 17 C 0.12 2.57 5.06 -2.53 -0.01 2.55 16 18 N -0.60 -14.56 2.96 -170.07 -0.50 -15.06 16 19 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 20 H 0.08 2.52 8.06 -52.48 -0.42 2.09 16 21 C 0.03 0.98 5.42 -17.43 -0.09 0.89 16 22 N -0.90 -27.64 13.97 55.49 0.78 -26.86 16 23 Si 0.88 22.48 24.83 -169.99 -4.22 18.26 16 24 H -0.28 -7.01 7.07 56.52 0.40 -6.61 16 25 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 26 H -0.28 -6.97 7.08 56.52 0.40 -6.57 16 27 C 0.14 2.74 5.64 -3.06 -0.02 2.72 16 28 C 0.04 0.48 5.51 -3.70 -0.02 0.46 16 29 C 0.12 1.31 6.61 -3.60 -0.02 1.29 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.65 6.95 -51.93 -0.36 0.29 16 32 H 0.08 0.45 8.12 -51.92 -0.42 0.03 16 33 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 34 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.80 6.43 -51.93 -0.33 0.47 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 1.19 6.38 -51.93 -0.33 0.86 16 40 H 0.06 0.84 7.95 -51.92 -0.41 0.43 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 43 H 0.02 0.40 5.57 -51.93 -0.29 0.11 16 44 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.04 0.85 7.31 -51.93 -0.38 0.47 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 0.98 7.05 -51.93 -0.37 0.62 16 49 H 0.10 1.08 7.04 -51.93 -0.37 0.71 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -34.31 389.84 -9.87 -44.19 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.89 Total: -3.17 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -2.38 Total: 5.81 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -1.35 Total: -62.63 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.22 Total: 18.26 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.31 -9.87 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046017763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.869 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds