Wall clock time and date at job start Wed Apr 1 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38633 * 120.46914 * 2 1 4 4 C 1.38583 * 118.48682 * 179.97438 * 3 2 1 5 5 C 1.38603 * 119.35196 * 359.97438 * 4 3 2 6 6 N 1.31494 * 120.89878 * 0.02562 * 5 4 3 7 7 C 1.32749 * 121.64477 * 359.68559 * 6 5 4 8 8 C 1.48169 * 119.72172 * 180.30821 * 7 6 5 9 9 O 1.21512 * 119.99895 * 254.42108 * 8 7 6 10 10 N 1.34774 * 119.99909 * 74.42256 * 8 7 6 11 11 C 1.47085 * 120.88470 * 4.63256 * 10 8 7 12 12 C 1.53690 * 108.27998 * 128.75257 * 11 10 8 13 13 N 1.46897 * 109.25399 * 54.08361 * 12 11 10 14 14 C 1.46904 * 110.99956 * 172.60882 * 13 12 11 15 15 H 1.08999 * 110.64369 * 67.81399 * 14 13 12 16 16 C 1.55154 * 110.72073 * 191.15628 * 14 13 12 17 17 C 1.54912 * 101.58476 * 153.86689 * 16 14 13 18 18 N 1.47424 * 104.82785 * 322.98716 * 17 16 14 19 19 C 1.36940 * 125.64917 * 204.16702 * 18 17 16 20 20 H 1.08003 * 120.00092 * 146.38636 * 19 18 17 21 21 C 1.38812 * 119.99711 * 326.38371 * 19 18 17 22 22 N 1.31623 * 119.99759 * 158.30963 * 21 19 18 23 23 Si 1.86794 * 120.00122 * 338.31618 * 21 19 18 24 24 H 1.48504 * 109.47117 * 87.02230 * 23 21 19 25 25 H 1.48508 * 109.46992 * 207.01560 * 23 21 19 26 26 H 1.48498 * 109.47146 * 327.01806 * 23 21 19 27 27 C 1.47030 * 108.70681 * 24.12820 * 18 17 16 28 28 C 1.46898 * 111.27398 * 296.75698 * 13 12 11 29 29 C 1.47082 * 120.88099 * 184.91050 * 10 8 7 30 30 H 1.09000 * 109.47483 * 86.51529 * 1 2 3 31 31 H 1.09000 * 109.47537 * 206.51769 * 1 2 3 32 32 H 1.09008 * 109.47259 * 326.52009 * 1 2 3 33 33 H 1.07999 * 120.75407 * 359.95149 * 3 2 1 34 34 H 1.07997 * 120.32392 * 180.02562 * 4 3 2 35 35 H 1.08000 * 119.55133 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.62936 * 248.52736 * 11 10 8 37 37 H 1.09004 * 109.62552 * 9.10314 * 11 10 8 38 38 H 1.09004 * 109.64987 * 294.08128 * 12 11 10 39 39 H 1.08998 * 109.44460 * 173.96584 * 12 11 10 40 40 H 1.09008 * 111.00126 * 271.93348 * 16 14 13 41 41 H 1.09001 * 111.00672 * 35.78654 * 16 14 13 42 42 H 1.08998 * 110.36850 * 204.15067 * 17 16 14 43 43 H 1.08996 * 110.46346 * 81.87213 * 17 16 14 44 44 H 0.96999 * 120.00184 * 180.02562 * 22 21 19 45 45 H 1.08995 * 109.88503 * 239.52363 * 27 18 17 46 46 H 1.08998 * 109.87866 * 118.35583 * 27 18 17 47 47 H 1.08999 * 109.48876 * 303.14904 * 28 13 12 48 48 H 1.08999 * 109.49468 * 183.06863 * 28 13 12 49 49 H 1.08999 * 109.62863 * 350.89506 * 29 10 8 50 50 H 1.09001 * 109.62997 * 111.28603 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1469 0.0005 5 6 4.2321 -0.0839 0.0016 6 7 3.5406 -1.2023 0.0016 7 6 2.2131 -1.2003 0.0068 8 6 1.4766 -2.4860 0.0135 9 8 0.9254 -2.8756 -0.9969 10 7 1.4179 -3.2231 1.1402 11 6 1.9906 -2.7239 2.3997 12 6 0.9219 -2.8470 3.4973 13 7 0.4324 -4.2312 3.5439 14 6 -0.4612 -4.4353 4.6919 15 1 -1.3879 -3.8765 4.5616 16 6 -0.7507 -5.9452 4.9006 17 6 -1.0685 -5.9945 6.4159 18 7 -0.1470 -5.0191 7.0266 19 6 0.2796 -5.0305 8.3278 20 1 1.2757 -4.6923 8.5725 21 6 -0.5683 -5.4766 9.3323 22 7 -0.0701 -5.8937 10.4769 23 14 -2.4162 -5.4851 9.0594 24 1 -2.8150 -6.7604 8.4114 25 1 -3.1100 -5.3557 10.3660 26 1 -2.7925 -4.3461 8.1841 27 6 0.2389 -4.0326 6.0070 28 6 -0.2310 -4.6045 2.2875 29 6 0.7850 -4.5508 1.1416 30 1 -0.3634 0.0625 -1.0257 31 1 -0.3634 -0.9195 0.4588 32 1 -0.3634 0.8572 0.5669 33 1 1.6900 2.1415 -0.0008 34 1 4.1721 2.0597 0.0010 35 1 5.3114 -0.1250 0.0025 36 1 2.8639 -3.3193 2.6662 37 1 2.2782 -1.6791 2.2823 38 1 0.0921 -2.1749 3.2780 39 1 1.3588 -2.5830 4.4604 40 1 -1.6103 -6.2634 4.3106 41 1 0.1269 -6.5475 4.6656 42 1 -0.8802 -6.9929 6.8108 43 1 -2.1032 -5.7043 6.5979 44 1 -0.6625 -6.2058 11.1787 45 1 1.3201 -4.0444 5.8701 46 1 -0.0875 -3.0381 6.3112 47 1 -1.0446 -3.9080 2.0850 48 1 -0.6298 -5.6153 2.3731 49 1 0.2752 -4.7144 0.1922 50 1 1.5450 -5.3186 1.2862 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046017763.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:17 Heat of formation + Delta-G solvation = 24.502741 kcal Electronic energy + Delta-G solvation = -30721.943689 eV Core-core repulsion = 26749.189568 eV Total energy + Delta-G solvation = -3972.754121 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01381 -40.70742 -39.78905 -38.19090 -35.68560 -34.70350 -34.18448 -33.23174 -32.27923 -31.38309 -29.72823 -28.65647 -27.73677 -25.88645 -25.46838 -24.59466 -23.32348 -22.58751 -22.27907 -21.16742 -20.47333 -19.01677 -18.80594 -17.88942 -17.66931 -17.22734 -17.00321 -16.58663 -16.15360 -15.97162 -15.76458 -15.59704 -15.40913 -15.23721 -15.07792 -14.72919 -14.64745 -14.17009 -14.02892 -13.93454 -13.81487 -13.61555 -13.50133 -13.43461 -13.11355 -12.80231 -12.78077 -12.66845 -12.64467 -12.35512 -12.20979 -11.99084 -11.78784 -11.63239 -11.55197 -11.38364 -10.80277 -10.72535 -10.50517 -9.98788 -9.94564 -9.32974 -8.84778 -8.23791 -5.59537 -0.16347 0.22952 1.27256 1.30820 1.37517 1.48803 1.73187 2.40367 2.65668 2.66748 3.01388 3.06639 3.44858 3.58772 3.60834 3.76207 3.79579 3.90560 3.93802 3.96592 4.03618 4.14729 4.19354 4.21754 4.33379 4.35428 4.42561 4.46451 4.52339 4.58312 4.60060 4.67667 4.68915 4.79794 4.81487 4.87636 4.95395 4.97188 5.02289 5.05984 5.08061 5.11347 5.17494 5.29376 5.30369 5.63333 5.80399 5.97270 6.01961 6.12178 6.18061 6.75973 6.79279 6.87441 7.50701 8.14998 8.96907 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.002476 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.605974 B =11307.375128 C =11827.823703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.109 4.109 3 C -0.076 4.076 4 C -0.140 4.140 5 C 0.085 3.915 6 N -0.485 5.485 7 C 0.063 3.937 8 C 0.581 3.419 9 O -0.568 6.568 10 N -0.597 5.597 11 C 0.130 3.870 12 C 0.042 3.958 13 N -0.529 5.529 14 C 0.086 3.914 15 H 0.055 0.945 16 C -0.105 4.105 17 C 0.111 3.889 18 N -0.624 5.624 19 C -0.243 4.243 20 H 0.047 0.953 21 C -0.021 4.021 22 N -0.950 5.950 23 Si 0.945 3.055 24 H -0.269 1.269 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.139 3.861 28 C 0.049 3.951 29 C 0.118 3.882 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.100 0.900 33 H 0.173 0.827 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.018 0.982 44 H 0.265 0.735 45 H 0.039 0.961 46 H 0.023 0.977 47 H 0.038 0.962 48 H 0.106 0.894 49 H 0.093 0.907 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.057 15.212 -25.178 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.101 4.101 4 C -0.160 4.160 5 C -0.074 4.074 6 N -0.196 5.196 7 C -0.075 4.075 8 C 0.368 3.632 9 O -0.447 6.447 10 N -0.329 5.329 11 C 0.007 3.993 12 C -0.087 4.087 13 N -0.254 5.254 14 C -0.023 4.023 15 H 0.073 0.927 16 C -0.143 4.143 17 C -0.014 4.014 18 N -0.351 5.351 19 C -0.372 4.372 20 H 0.065 0.935 21 C -0.218 4.218 22 N -0.594 5.594 23 Si 0.773 3.227 24 H -0.195 1.195 25 H -0.231 1.231 26 H -0.194 1.194 27 C 0.014 3.986 28 C -0.080 4.080 29 C -0.004 4.004 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.191 0.809 34 H 0.196 0.804 35 H 0.204 0.796 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.101 0.899 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.056 0.944 48 H 0.124 0.876 49 H 0.112 0.888 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.592 13.811 -25.420 29.152 hybrid contribution -1.689 0.992 0.585 2.045 sum 1.903 14.803 -24.835 28.975 Atomic orbital electron populations 1.20802 0.89223 1.03360 1.03509 1.21029 0.98295 0.92917 0.98968 1.21907 0.94713 0.98171 0.95332 1.22771 0.95242 1.00582 0.97378 1.23380 1.01690 0.87211 0.95126 1.67578 1.06479 1.33815 1.11723 1.20712 0.90920 0.92969 1.02881 1.18273 0.78908 0.83234 0.82807 1.90752 1.48005 1.71942 1.33985 1.48187 1.56874 1.18426 1.09415 1.21850 0.96041 1.00114 0.81304 1.22582 0.97538 0.88884 0.99674 1.61938 1.38319 1.22946 1.02237 1.22449 0.93508 0.97052 0.89263 0.92703 1.22709 1.02610 0.95143 0.93880 1.21992 0.92571 0.93041 0.93770 1.44737 1.55347 1.28123 1.06921 1.18420 0.96203 1.40767 0.81804 0.93534 1.25996 1.02088 0.99012 0.94671 1.69968 1.36476 1.45432 1.07569 0.85803 0.81985 0.79103 0.75826 1.19485 1.23101 1.19368 1.21502 0.97855 0.91522 0.87684 1.22474 0.94799 1.02728 0.87969 1.21821 0.96384 0.82962 0.99214 0.90135 0.93356 0.88156 0.80941 0.80438 0.79597 0.90104 0.89499 0.94060 0.89022 0.88536 0.89926 0.94240 0.96448 0.92595 0.94250 0.95855 0.94392 0.87607 0.88826 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.67 9.69 71.23 0.69 -0.98 16 2 C -0.11 -1.86 5.93 -19.52 -0.12 -1.97 16 3 C -0.08 -0.79 9.87 22.45 0.22 -0.57 16 4 C -0.14 -1.22 10.11 22.44 0.23 -0.99 16 5 C 0.08 1.15 11.18 84.83 0.95 2.10 16 6 N -0.49 -10.49 10.27 -184.91 -1.90 -12.38 16 7 C 0.06 1.43 4.52 41.89 0.19 1.61 16 8 C 0.58 15.36 5.73 86.88 0.50 15.86 16 9 O -0.57 -18.43 16.56 -3.75 -0.06 -18.49 16 10 N -0.60 -13.85 3.00 -820.07 -2.46 -16.31 16 11 C 0.13 2.71 6.51 86.50 0.56 3.27 16 12 C 0.04 0.93 5.38 86.54 0.47 1.40 16 13 N -0.53 -12.92 4.46 -862.16 -3.85 -16.77 16 14 C 0.09 2.51 2.65 46.10 0.12 2.64 16 15 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 16 C -0.11 -3.14 5.68 31.99 0.18 -2.96 16 17 C 0.11 4.58 5.06 86.86 0.44 5.02 16 18 N -0.62 -29.94 2.96 -691.97 -2.05 -31.99 16 19 C -0.24 -14.11 10.47 84.03 0.88 -13.23 16 20 H 0.05 2.97 8.06 -2.91 -0.02 2.95 16 21 C -0.02 -1.26 5.42 84.86 0.46 -0.80 16 22 N -0.95 -59.85 13.97 21.65 0.30 -59.55 16 23 Si 0.95 46.64 24.83 68.60 1.70 48.35 16 24 H -0.27 -12.52 7.07 99.48 0.70 -11.81 16 25 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 26 H -0.27 -12.83 7.08 99.48 0.70 -12.12 16 27 C 0.14 5.32 5.64 86.73 0.49 5.81 16 28 C 0.05 0.99 5.51 86.38 0.48 1.47 16 29 C 0.12 2.51 6.61 86.35 0.57 3.08 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 0.90 6.95 -2.39 -0.02 0.89 16 32 H 0.10 0.94 8.12 -2.38 -0.02 0.92 16 33 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 35 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.70 6.43 -2.38 -0.02 1.69 16 38 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.09 2.15 6.38 -2.39 -0.02 2.14 16 40 H 0.10 2.25 7.95 -2.38 -0.02 2.23 16 41 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 43 H 0.02 0.74 5.57 -2.39 -0.01 0.73 16 44 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 45 H 0.04 1.54 7.31 -2.39 -0.02 1.52 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 1.90 7.05 -2.39 -0.02 1.88 16 49 H 0.09 2.07 7.04 -2.39 -0.02 2.05 16 50 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.46 389.84 -0.08 -77.54 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.92 Total: 8.84 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 7.31 Total: 20.76 kcal Atomic # 7 Polarization: -127.05 SS G_CDS: -9.96 Total: -137.00 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.06 Total: -18.49 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.70 Total: 48.35 kcal Total: -77.46 -0.08 -77.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046017763.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.042 kcal (2) G-P(sol) polarization free energy of solvation -77.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds