Wall clock time and date at job start Wed Apr 1 2020 03:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38164 * 119.55162 * 2 1 4 4 C 1.39799 * 119.00190 * 179.97438 * 3 2 1 5 5 C 1.48154 * 120.92413 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99757 * 40.02930 * 5 4 3 7 7 N 1.34775 * 119.99905 * 220.02695 * 5 4 3 8 8 C 1.47072 * 120.88262 * 185.53769 * 7 5 4 9 9 C 1.53243 * 108.52401 * 231.21107 * 8 7 5 10 10 N 1.46901 * 109.33598 * 306.16603 * 9 8 7 11 11 C 1.46894 * 110.99798 * 187.25460 * 10 9 8 12 12 H 1.09003 * 110.64373 * 297.31658 * 11 10 9 13 13 C 1.55160 * 110.72282 * 60.45981 * 11 10 9 14 14 C 1.54915 * 101.58110 * 153.86383 * 13 11 10 15 15 N 1.47426 * 104.83123 * 322.99054 * 14 13 11 16 16 C 1.36940 * 125.64534 * 204.08971 * 15 14 13 17 17 H 1.07995 * 119.99636 * 163.93947 * 16 15 14 18 18 C 1.38813 * 120.00100 * 343.93652 * 16 15 14 19 19 N 1.31619 * 119.99662 * 157.77809 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 337.78053 * 18 16 15 21 21 H 1.48502 * 109.47415 * 90.00060 * 20 18 16 22 22 H 1.48495 * 109.47388 * 329.99717 * 20 18 16 23 23 H 1.48497 * 109.46883 * 209.99982 * 20 18 16 24 24 C 1.47026 * 108.70389 * 24.35977 * 15 14 13 25 25 C 1.46895 * 111.26950 * 63.10523 * 10 9 8 26 26 C 1.47085 * 120.88196 * 5.56193 * 7 5 4 27 27 C 1.39838 * 118.15345 * 0.25610 * 4 3 2 28 28 C 1.38128 * 119.00272 * 359.52135 * 27 4 3 29 29 N 1.31803 * 119.55135 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47483 * 90.00152 * 1 2 3 31 31 H 1.09001 * 109.47073 * 209.99571 * 1 2 3 32 32 H 1.09000 * 109.47524 * 329.99993 * 1 2 3 33 33 H 1.07999 * 120.50264 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.63284 * 111.49509 * 8 7 5 35 35 H 1.09006 * 109.79072 * 351.01367 * 8 7 5 36 36 H 1.08998 * 109.49080 * 186.21141 * 9 8 7 37 37 H 1.09001 * 109.51824 * 66.14013 * 9 8 7 38 38 H 1.09007 * 110.99940 * 35.79530 * 13 11 10 39 39 H 1.08993 * 111.04018 * 271.95127 * 13 11 10 40 40 H 1.09005 * 110.36676 * 204.15436 * 14 13 11 41 41 H 1.08995 * 110.36467 * 81.83352 * 14 13 11 42 42 H 0.97000 * 120.00109 * 5.09332 * 19 18 16 43 43 H 1.08994 * 109.87936 * 118.12740 * 24 15 14 44 44 H 1.09001 * 109.88016 * 239.29122 * 24 15 14 45 45 H 1.09007 * 109.49002 * 56.85195 * 25 10 9 46 46 H 1.08993 * 109.49642 * 176.93183 * 25 10 9 47 47 H 1.08996 * 109.62822 * 248.50189 * 26 7 5 48 48 H 1.09005 * 109.62741 * 9.08159 * 26 7 5 49 49 H 1.07996 * 120.50056 * 179.72748 * 27 4 3 50 50 H 1.07994 * 119.55246 * 180.23372 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5863 1.1885 0.0005 5 6 4.3598 2.4521 0.0000 6 8 3.9896 3.3913 0.6760 7 7 5.4742 2.5596 -0.7503 8 6 6.3229 3.7584 -0.6740 9 6 6.5624 4.2767 -2.0961 10 7 7.0968 3.1892 -2.9266 11 6 7.5011 3.6863 -4.2484 12 1 6.6416 4.0816 -4.7897 13 6 8.6086 4.7647 -4.1142 14 6 9.3316 4.6395 -5.4786 15 7 9.3172 3.1969 -5.7823 16 6 10.1996 2.5451 -6.6019 17 1 10.2767 1.4685 -6.5648 18 6 10.9949 3.2681 -7.4803 19 7 12.1132 2.7458 -7.9377 20 14 10.4781 4.9822 -8.0132 21 1 11.0397 5.9838 -7.0716 22 1 8.9961 5.0760 -8.0097 23 1 10.9877 5.2497 -9.3822 24 6 8.1948 2.5751 -5.0646 25 6 6.1310 2.0894 -3.0506 26 6 5.8737 1.4815 -1.6676 27 6 4.2343 -0.0507 -0.0044 28 6 3.4741 -1.2040 0.0004 29 7 2.1570 -1.1466 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6493 2.1377 0.0004 34 1 7.2765 3.5032 -0.2118 35 1 5.8239 4.5268 -0.0834 36 1 7.2781 5.0983 -2.0680 37 1 5.6212 4.6284 -2.5188 38 1 9.2841 4.5307 -3.2913 39 1 8.1755 5.7573 -3.9913 40 1 10.3571 5.0002 -5.3991 41 1 8.7919 5.1942 -6.2461 42 1 12.3449 1.8293 -7.7203 43 1 7.4928 2.1430 -5.7776 44 1 8.5672 1.8018 -4.3927 45 1 5.1955 2.4713 -3.4597 46 1 6.5336 1.3248 -3.7148 47 1 6.7841 1.0074 -1.3010 48 1 5.0746 0.7432 -1.7350 49 1 5.3128 -0.1053 -0.0086 50 1 3.9653 -2.1657 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046072934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:04 Heat of formation + Delta-G solvation = 52.645172 kcal Electronic energy + Delta-G solvation = -30314.020787 eV Core-core repulsion = 26342.487014 eV Total energy + Delta-G solvation = -3971.533773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.28362 -39.95404 -38.76749 -36.99498 -34.70891 -33.57078 -32.87892 -32.22814 -31.42099 -29.63239 -28.50933 -28.12453 -26.69448 -24.80324 -24.14984 -23.24692 -23.08816 -21.52138 -20.71848 -19.82612 -19.44766 -17.91102 -17.44188 -16.97472 -16.63047 -16.28384 -15.85674 -15.57111 -15.28264 -15.23168 -15.02090 -14.80571 -14.46803 -13.98486 -13.78241 -13.69128 -13.62564 -13.35209 -13.13729 -12.92525 -12.73756 -12.52806 -12.33837 -12.14047 -11.91511 -11.74382 -11.57171 -11.38957 -11.08699 -11.05034 -10.79508 -10.63479 -10.43039 -10.23873 -10.02444 -9.81465 -9.56801 -9.39016 -9.22640 -9.09418 -8.53841 -8.36099 -7.06759 -6.31257 -3.23531 0.37213 0.61004 2.31035 2.51820 3.29526 3.40329 3.50359 3.64738 3.71926 3.81848 3.87941 4.28574 4.45209 4.54150 4.58348 4.62642 4.67776 4.79576 4.93551 4.95534 5.00399 5.03169 5.08922 5.12861 5.16351 5.23908 5.29822 5.35240 5.42632 5.45589 5.47682 5.55468 5.55584 5.59259 5.60838 5.63194 5.78193 5.88938 6.06619 6.12531 6.16482 6.20399 6.43036 6.46085 6.55961 6.76197 6.93178 6.98445 7.17782 7.48690 7.67624 7.73751 8.34141 9.03404 9.58004 10.25938 11.15812 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.002273 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.704395 B =12317.283038 C =12969.710602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.127 3.873 3 C -0.122 4.122 4 C -0.077 4.077 5 C 0.560 3.440 6 O -0.532 6.532 7 N -0.602 5.602 8 C 0.118 3.882 9 C 0.041 3.959 10 N -0.525 5.525 11 C 0.071 3.929 12 H 0.047 0.953 13 C -0.121 4.121 14 C 0.105 3.895 15 N -0.607 5.607 16 C -0.324 4.324 17 H 0.074 0.926 18 C -0.021 4.021 19 N -0.923 5.923 20 Si 1.067 2.933 21 H -0.293 1.293 22 H -0.287 1.287 23 H -0.299 1.299 24 C 0.145 3.855 25 C 0.039 3.961 26 C 0.103 3.897 27 C -0.152 4.152 28 C 0.104 3.896 29 N -0.472 5.472 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.030 0.970 42 H 0.262 0.738 43 H 0.022 0.978 44 H 0.040 0.960 45 H 0.036 0.964 46 H 0.096 0.904 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.145 0.855 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.422 -3.261 17.755 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.011 4.011 3 C -0.143 4.143 4 C -0.088 4.088 5 C 0.348 3.652 6 O -0.409 6.409 7 N -0.335 5.335 8 C -0.005 4.005 9 C -0.088 4.088 10 N -0.250 5.250 11 C -0.037 4.037 12 H 0.065 0.935 13 C -0.160 4.160 14 C -0.020 4.020 15 N -0.334 5.334 16 C -0.452 4.452 17 H 0.091 0.909 18 C -0.221 4.221 19 N -0.564 5.564 20 Si 0.899 3.101 21 H -0.221 1.221 22 H -0.214 1.214 23 H -0.227 1.227 24 C 0.019 3.981 25 C -0.090 4.090 26 C -0.020 4.020 27 C -0.173 4.173 28 C -0.053 4.053 29 N -0.183 5.183 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.040 0.960 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.114 0.886 47 H 0.103 0.897 48 H 0.111 0.889 49 H 0.163 0.837 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.125 -2.455 17.394 26.713 hybrid contribution -0.594 -0.314 0.342 0.754 sum -20.719 -2.768 17.736 27.414 Atomic orbital electron populations 1.20752 0.88208 1.03826 1.03461 1.21316 0.97380 0.87745 0.94630 1.22041 0.92980 1.00079 0.99183 1.20306 0.94462 0.93755 1.00245 1.18265 0.80157 0.86933 0.79858 1.90786 1.68336 1.39113 1.42638 1.48089 1.24171 1.20038 1.41205 1.21804 0.94484 0.87029 0.97133 1.22476 0.99048 0.94460 0.92800 1.61997 1.39314 1.09069 1.14643 1.22699 0.96630 0.96774 0.87647 0.93545 1.22810 0.97148 0.96550 0.99456 1.22035 0.99208 0.87453 0.93335 1.44718 1.31013 1.03105 1.54602 1.20031 1.16096 0.92905 1.16121 0.90863 1.25935 0.94502 1.05858 0.95812 1.70902 1.19133 1.15781 1.50587 0.83803 0.74977 0.75367 0.75908 1.22106 1.21442 1.22706 1.21290 0.89686 0.93877 0.93220 1.22493 0.94617 0.95538 0.96364 1.22272 1.01303 0.89372 0.89030 1.22477 1.02097 0.92294 1.00404 1.22780 0.89104 0.98481 0.94897 1.67424 1.10326 1.29396 1.11129 0.90052 0.90125 0.90415 0.83959 0.90130 0.88572 0.88849 0.94545 0.90176 0.91938 0.92078 0.95249 0.92739 0.95991 0.94223 0.94530 0.88613 0.89735 0.88925 0.83682 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.17 36.00 0.37 -0.24 16 2 C 0.13 1.09 6.78 -82.63 -0.56 0.53 16 3 C -0.12 -1.12 9.40 -39.03 -0.37 -1.49 16 4 C -0.08 -0.75 5.15 -104.64 -0.54 -1.28 16 5 C 0.56 6.49 7.39 -12.19 -0.09 6.40 16 6 O -0.53 -7.78 16.41 5.36 0.09 -7.69 16 7 N -0.60 -6.23 3.01 -173.46 -0.52 -6.75 16 8 C 0.12 1.21 6.61 -3.60 -0.02 1.18 16 9 C 0.04 0.45 5.47 -3.70 -0.02 0.43 16 10 N -0.53 -6.72 4.45 -224.15 -1.00 -7.72 16 11 C 0.07 1.11 2.64 -65.87 -0.17 0.93 16 12 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 13 C -0.12 -1.97 5.37 -24.58 -0.13 -2.10 16 14 C 0.11 2.24 4.69 -2.53 -0.01 2.23 16 15 N -0.61 -14.72 3.24 -170.06 -0.55 -15.27 16 16 C -0.32 -9.22 10.45 -15.06 -0.16 -9.38 16 17 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 18 C -0.02 -0.61 5.44 -17.43 -0.09 -0.70 16 19 N -0.92 -28.81 13.70 55.49 0.76 -28.05 16 20 Si 1.07 26.56 24.69 -169.99 -4.20 22.36 16 21 H -0.29 -6.88 6.69 56.52 0.38 -6.50 16 22 H -0.29 -6.78 6.16 56.52 0.35 -6.44 16 23 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 24 C 0.15 2.84 5.72 -3.06 -0.02 2.83 16 25 C 0.04 0.43 5.45 -3.70 -0.02 0.41 16 26 C 0.10 0.92 5.05 -3.60 -0.02 0.90 16 27 C -0.15 -1.18 7.53 -39.02 -0.29 -1.47 16 28 C 0.10 0.79 11.17 -17.59 -0.20 0.60 16 29 N -0.47 -4.42 10.25 -9.53 -0.10 -4.52 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 1.02 7.05 -51.93 -0.37 0.65 16 36 H 0.09 0.98 6.79 -51.93 -0.35 0.62 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.85 7.93 -51.93 -0.41 0.44 16 40 H 0.06 1.39 6.47 -51.93 -0.34 1.05 16 41 H 0.03 0.64 5.40 -51.93 -0.28 0.36 16 42 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 45 H 0.04 0.42 8.14 -51.92 -0.42 -0.01 16 46 H 0.10 1.09 6.79 -51.93 -0.35 0.73 16 47 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 48 H 0.09 0.71 4.90 -51.93 -0.25 0.45 16 49 H 0.15 0.87 6.60 -52.49 -0.35 0.52 16 50 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -34.60 384.02 -9.90 -44.50 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.82 Total: -2.42 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.35 Total: -0.22 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.41 Total: -62.31 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 14 Polarization: 26.56 SS G_CDS: -4.20 Total: 22.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.60 -9.90 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046072934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.143 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds