Wall clock time and date at job start Wed Apr 1 2020 03:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38164 * 119.55162 * 2 1 4 4 C 1.39799 * 119.00190 * 179.97438 * 3 2 1 5 5 C 1.48154 * 120.92413 * 179.97438 * 4 3 2 6 6 O 1.21504 * 119.99757 * 40.02930 * 5 4 3 7 7 N 1.34775 * 119.99905 * 220.02695 * 5 4 3 8 8 C 1.47072 * 120.88262 * 185.53769 * 7 5 4 9 9 C 1.53243 * 108.52401 * 231.21107 * 8 7 5 10 10 N 1.46901 * 109.33598 * 306.16603 * 9 8 7 11 11 C 1.46894 * 110.99798 * 187.25460 * 10 9 8 12 12 H 1.09003 * 110.64373 * 297.31658 * 11 10 9 13 13 C 1.55160 * 110.72282 * 60.45981 * 11 10 9 14 14 C 1.54915 * 101.58110 * 153.86383 * 13 11 10 15 15 N 1.47426 * 104.83123 * 322.99054 * 14 13 11 16 16 C 1.36940 * 125.64534 * 204.08971 * 15 14 13 17 17 H 1.07995 * 119.99636 * 163.93947 * 16 15 14 18 18 C 1.38813 * 120.00100 * 343.93652 * 16 15 14 19 19 N 1.31619 * 119.99662 * 157.77809 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 337.78053 * 18 16 15 21 21 H 1.48502 * 109.47415 * 90.00060 * 20 18 16 22 22 H 1.48495 * 109.47388 * 329.99717 * 20 18 16 23 23 H 1.48497 * 109.46883 * 209.99982 * 20 18 16 24 24 C 1.47026 * 108.70389 * 24.35977 * 15 14 13 25 25 C 1.46895 * 111.26950 * 63.10523 * 10 9 8 26 26 C 1.47085 * 120.88196 * 5.56193 * 7 5 4 27 27 C 1.39838 * 118.15345 * 0.25610 * 4 3 2 28 28 C 1.38128 * 119.00272 * 359.52135 * 27 4 3 29 29 N 1.31803 * 119.55135 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47483 * 90.00152 * 1 2 3 31 31 H 1.09001 * 109.47073 * 209.99571 * 1 2 3 32 32 H 1.09000 * 109.47524 * 329.99993 * 1 2 3 33 33 H 1.07999 * 120.50264 * 0.02562 * 3 2 1 34 34 H 1.09002 * 109.63284 * 111.49509 * 8 7 5 35 35 H 1.09006 * 109.79072 * 351.01367 * 8 7 5 36 36 H 1.08998 * 109.49080 * 186.21141 * 9 8 7 37 37 H 1.09001 * 109.51824 * 66.14013 * 9 8 7 38 38 H 1.09007 * 110.99940 * 35.79530 * 13 11 10 39 39 H 1.08993 * 111.04018 * 271.95127 * 13 11 10 40 40 H 1.09005 * 110.36676 * 204.15436 * 14 13 11 41 41 H 1.08995 * 110.36467 * 81.83352 * 14 13 11 42 42 H 0.97000 * 120.00109 * 5.09332 * 19 18 16 43 43 H 1.08994 * 109.87936 * 118.12740 * 24 15 14 44 44 H 1.09001 * 109.88016 * 239.29122 * 24 15 14 45 45 H 1.09007 * 109.49002 * 56.85195 * 25 10 9 46 46 H 1.08993 * 109.49642 * 176.93183 * 25 10 9 47 47 H 1.08996 * 109.62822 * 248.50189 * 26 7 5 48 48 H 1.09005 * 109.62741 * 9.08159 * 26 7 5 49 49 H 1.07996 * 120.50056 * 179.72748 * 27 4 3 50 50 H 1.07994 * 119.55246 * 180.23372 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2019 0.0000 4 6 3.5863 1.1885 0.0005 5 6 4.3598 2.4521 0.0000 6 8 3.9896 3.3913 0.6760 7 7 5.4742 2.5596 -0.7503 8 6 6.3229 3.7584 -0.6740 9 6 6.5624 4.2767 -2.0961 10 7 7.0968 3.1892 -2.9266 11 6 7.5011 3.6863 -4.2484 12 1 6.6416 4.0816 -4.7897 13 6 8.6086 4.7647 -4.1142 14 6 9.3316 4.6395 -5.4786 15 7 9.3172 3.1969 -5.7823 16 6 10.1996 2.5451 -6.6019 17 1 10.2767 1.4685 -6.5648 18 6 10.9949 3.2681 -7.4803 19 7 12.1132 2.7458 -7.9377 20 14 10.4781 4.9822 -8.0132 21 1 11.0397 5.9838 -7.0716 22 1 8.9961 5.0760 -8.0097 23 1 10.9877 5.2497 -9.3822 24 6 8.1948 2.5751 -5.0646 25 6 6.1310 2.0894 -3.0506 26 6 5.8737 1.4815 -1.6676 27 6 4.2343 -0.0507 -0.0044 28 6 3.4741 -1.2040 0.0004 29 7 2.1570 -1.1466 -0.0005 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6493 2.1377 0.0004 34 1 7.2765 3.5032 -0.2118 35 1 5.8239 4.5268 -0.0834 36 1 7.2781 5.0983 -2.0680 37 1 5.6212 4.6284 -2.5188 38 1 9.2841 4.5307 -3.2913 39 1 8.1755 5.7573 -3.9913 40 1 10.3571 5.0002 -5.3991 41 1 8.7919 5.1942 -6.2461 42 1 12.3449 1.8293 -7.7203 43 1 7.4928 2.1430 -5.7776 44 1 8.5672 1.8018 -4.3927 45 1 5.1955 2.4713 -3.4597 46 1 6.5336 1.3248 -3.7148 47 1 6.7841 1.0074 -1.3010 48 1 5.0746 0.7432 -1.7350 49 1 5.3128 -0.1053 -0.0086 50 1 3.9653 -2.1657 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046072934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:20:03 Heat of formation + Delta-G solvation = 28.119993 kcal Electronic energy + Delta-G solvation = -30315.084279 eV Core-core repulsion = 26342.487014 eV Total energy + Delta-G solvation = -3972.597265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.03140 -40.78514 -39.91763 -38.26874 -35.87764 -34.51234 -33.96848 -33.48858 -32.28735 -31.23799 -29.85333 -28.67249 -27.89668 -25.67620 -25.51813 -24.39315 -23.85936 -22.51977 -22.20377 -21.15648 -20.33490 -19.52451 -18.69587 -17.74148 -17.48693 -17.10276 -17.02912 -16.81983 -16.32888 -16.00571 -15.89354 -15.74058 -15.47514 -15.36410 -15.10119 -15.02452 -14.71729 -14.38427 -14.29246 -13.83495 -13.61008 -13.32572 -13.25262 -13.11690 -13.00330 -12.93741 -12.77029 -12.70766 -12.56079 -12.34658 -12.07756 -11.70667 -11.69553 -11.49168 -11.43857 -11.23326 -10.94093 -10.67735 -10.50249 -9.98884 -9.96910 -9.36156 -9.12631 -8.60288 -5.46433 -0.31465 0.01037 1.40750 1.48211 1.53674 1.69859 1.72253 2.53123 2.62612 2.70715 3.09010 3.12345 3.30676 3.45836 3.56956 3.72065 3.74222 3.87028 3.89370 3.93883 3.99268 4.14989 4.17843 4.21039 4.31197 4.35247 4.40804 4.45083 4.52978 4.58282 4.65988 4.68081 4.76050 4.77278 4.79577 4.81230 4.91146 4.93332 4.94362 4.97338 5.01637 5.04756 5.15274 5.26775 5.28805 5.59030 5.60183 5.95161 6.00113 6.13292 6.16828 6.82589 6.84048 6.88468 7.48639 8.14224 8.86339 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020618 B = 0.002273 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.704395 B =12317.283038 C =12969.710602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.120 3.880 3 C -0.133 4.133 4 C -0.092 4.092 5 C 0.561 3.439 6 O -0.569 6.569 7 N -0.600 5.600 8 C 0.119 3.881 9 C 0.045 3.955 10 N -0.529 5.529 11 C 0.087 3.913 12 H 0.054 0.946 13 C -0.107 4.107 14 C 0.094 3.906 15 N -0.629 5.629 16 C -0.314 4.314 17 H 0.040 0.960 18 C -0.078 4.078 19 N -0.958 5.958 20 Si 1.108 2.892 21 H -0.270 1.270 22 H -0.266 1.266 23 H -0.307 1.307 24 C 0.144 3.856 25 C 0.038 3.962 26 C 0.109 3.891 27 C -0.147 4.147 28 C 0.103 3.897 29 N -0.492 5.492 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.143 0.857 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.247 0.753 43 H 0.019 0.981 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.164 0.836 50 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.182 -2.416 19.157 29.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 C -0.153 4.153 4 C -0.103 4.103 5 C 0.350 3.650 6 O -0.449 6.449 7 N -0.331 5.331 8 C -0.003 4.003 9 C -0.083 4.083 10 N -0.254 5.254 11 C -0.021 4.021 12 H 0.072 0.928 13 C -0.145 4.145 14 C -0.030 4.030 15 N -0.357 5.357 16 C -0.443 4.443 17 H 0.058 0.942 18 C -0.272 4.272 19 N -0.602 5.602 20 Si 0.934 3.066 21 H -0.196 1.196 22 H -0.192 1.192 23 H -0.235 1.235 24 C 0.019 3.981 25 C -0.091 4.091 26 C -0.013 4.013 27 C -0.167 4.167 28 C -0.053 4.053 29 N -0.203 5.203 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.161 0.839 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.037 0.963 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.109 0.891 47 H 0.115 0.885 48 H 0.126 0.874 49 H 0.182 0.818 50 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.917 -1.624 18.831 28.941 hybrid contribution -0.077 -0.723 -0.037 0.728 sum -21.993 -2.347 18.794 29.025 Atomic orbital electron populations 1.20825 0.86560 1.04528 1.04223 1.21685 0.98602 0.87369 0.94090 1.22141 0.93040 1.00469 0.99681 1.20308 0.94693 0.93668 1.01632 1.18524 0.80149 0.87074 0.79291 1.90763 1.69305 1.40530 1.44289 1.48157 1.23760 1.20329 1.40889 1.21795 0.94749 0.87058 0.96664 1.22496 0.99117 0.94108 0.92555 1.61949 1.40458 1.09922 1.13088 1.22422 0.96337 0.94781 0.88607 0.92787 1.22741 0.96771 0.98747 0.96250 1.22203 0.99074 0.85389 0.96368 1.44829 1.31896 1.04824 1.54161 1.19914 1.16422 0.91788 1.16135 0.94202 1.27200 0.94190 1.09592 0.96192 1.71018 1.21108 1.15311 1.52796 0.83291 0.75913 0.71944 0.75435 1.19577 1.19188 1.23538 1.21375 0.88542 0.95108 0.93104 1.22539 0.94016 0.94932 0.97599 1.22327 1.02395 0.89049 0.87520 1.22650 1.02998 0.91468 0.99565 1.23277 0.88727 0.99637 0.93700 1.67497 1.11284 1.29765 1.11758 0.89166 0.89977 0.89162 0.83879 0.89308 0.88911 0.87752 0.94762 0.90065 0.88190 0.93774 0.94731 0.94320 0.96318 0.94769 0.94681 0.89070 0.88529 0.87408 0.81824 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.17 71.23 0.72 -0.34 16 2 C 0.12 1.91 6.78 42.54 0.29 2.20 16 3 C -0.13 -2.30 9.40 22.63 0.21 -2.09 16 4 C -0.09 -1.66 5.15 -19.88 -0.10 -1.76 16 5 C 0.56 12.21 7.39 86.88 0.64 12.85 16 6 O -0.57 -16.29 16.41 -3.73 -0.06 -16.35 16 7 N -0.60 -11.09 3.01 -821.00 -2.47 -13.56 16 8 C 0.12 2.17 6.61 86.35 0.57 2.74 16 9 C 0.05 0.86 5.47 86.38 0.47 1.33 16 10 N -0.53 -12.02 4.45 -863.06 -3.84 -15.86 16 11 C 0.09 2.48 2.64 46.11 0.12 2.60 16 12 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 13 C -0.11 -3.10 5.37 31.99 0.17 -2.93 16 14 C 0.09 3.81 4.69 86.86 0.41 4.22 16 15 N -0.63 -30.13 3.24 -691.95 -2.24 -32.37 16 16 C -0.31 -18.23 10.45 84.03 0.88 -17.35 16 17 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 18 C -0.08 -4.66 5.44 84.86 0.46 -4.20 16 19 N -0.96 -61.69 13.70 21.65 0.30 -61.39 16 20 Si 1.11 53.26 24.69 68.60 1.69 54.96 16 21 H -0.27 -11.85 6.69 99.48 0.67 -11.18 16 22 H -0.27 -11.73 6.16 99.48 0.61 -11.11 16 23 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 24 C 0.14 5.46 5.72 86.73 0.50 5.96 16 25 C 0.04 0.74 5.45 86.38 0.47 1.21 16 26 C 0.11 1.66 5.05 86.35 0.44 2.10 16 27 C -0.15 -1.93 7.53 22.63 0.17 -1.76 16 28 C 0.10 1.34 11.17 84.67 0.95 2.28 16 29 N -0.49 -8.39 10.25 -184.05 -1.89 -10.28 16 30 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.80 7.05 -2.38 -0.02 1.79 16 36 H 0.10 1.77 6.79 -2.39 -0.02 1.75 16 37 H 0.03 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 39 H 0.10 2.22 7.93 -2.39 -0.02 2.20 16 40 H 0.04 1.92 6.47 -2.38 -0.02 1.91 16 41 H 0.04 1.39 5.40 -2.39 -0.01 1.38 16 42 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.03 1.33 7.70 -2.39 -0.02 1.31 16 45 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.09 1.90 6.79 -2.39 -0.02 1.88 16 47 H 0.10 1.30 8.08 -2.39 -0.02 1.28 16 48 H 0.11 1.35 4.90 -2.38 -0.01 1.34 16 49 H 0.16 1.45 6.60 -2.91 -0.02 1.43 16 50 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -76.96 384.02 -0.38 -77.34 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.77 Total: 10.45 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 7.37 Total: 7.07 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -10.14 Total: -133.46 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -0.06 Total: -16.35 kcal Atomic # 14 Polarization: 53.26 SS G_CDS: 1.69 Total: 54.96 kcal Total: -76.96 -0.38 -77.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046072934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.460 kcal (2) G-P(sol) polarization free energy of solvation -76.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds