Wall clock time and date at job start Wed Apr 1 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 110.88801 * 2 1 4 4 C 1.34781 * 119.99645 * 62.42970 * 3 2 1 5 5 O 1.21508 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.48186 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.39032 * 119.69070 * 180.02562 * 6 4 3 8 8 C 1.39447 * 118.95549 * 179.97438 * 7 6 4 9 9 N 1.39188 * 120.83130 * 179.72079 * 8 7 6 10 10 C 1.48537 * 110.99968 * 116.72684 * 9 8 7 11 11 C 1.54935 * 103.22655 * 159.72408 * 10 9 8 12 12 C 1.54598 * 102.92292 * 322.58565 * 11 10 9 13 13 C 1.47897 * 111.00652 * 234.12631 * 9 8 7 14 14 C 1.39416 * 118.33593 * 359.97438 * 8 7 6 15 15 C 1.38227 * 119.26515 * 0.02829 * 14 8 7 16 16 N 1.31642 * 120.99558 * 359.96931 * 15 14 8 17 17 C 1.55155 * 111.03925 * 236.09462 * 2 1 3 18 18 C 1.54319 * 102.94454 * 206.40974 * 17 2 1 19 19 N 1.47030 * 107.27124 * 22.19581 * 18 17 2 20 20 C 1.36932 * 125.64679 * 181.02128 * 19 18 17 21 21 H 1.08008 * 119.99819 * 180.02562 * 20 19 18 22 22 C 1.38804 * 120.00427 * 0.04153 * 20 19 18 23 23 N 1.31620 * 119.99981 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00342 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47016 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47220 * 119.99921 * 24 22 20 27 27 H 1.48504 * 109.47552 * 240.00031 * 24 22 20 28 28 C 1.47418 * 108.70010 * 1.05764 * 19 18 17 29 29 H 1.09007 * 109.46878 * 60.69733 * 1 2 3 30 30 H 1.08998 * 109.47552 * 180.69910 * 1 2 3 31 31 H 1.09001 * 109.47107 * 300.70240 * 1 2 3 32 32 H 0.96999 * 120.00063 * 242.42065 * 3 2 1 33 33 H 1.08002 * 120.51588 * 0.02562 * 7 6 4 34 34 H 1.08993 * 110.66904 * 278.15966 * 10 9 8 35 35 H 1.09004 * 110.66201 * 41.28994 * 10 9 8 36 36 H 1.09000 * 110.72404 * 204.23227 * 11 10 9 37 37 H 1.08998 * 110.87859 * 81.01596 * 11 10 9 38 38 H 1.08996 * 110.31451 * 263.04623 * 12 11 10 39 39 H 1.09002 * 110.39488 * 140.91192 * 12 11 10 40 40 H 1.09008 * 109.91294 * 333.51636 * 13 9 8 41 41 H 1.09000 * 109.91727 * 94.59946 * 13 9 8 42 42 H 1.08000 * 120.36413 * 179.97438 * 14 8 7 43 43 H 1.08007 * 119.50206 * 179.97438 * 15 14 8 44 44 H 1.08998 * 110.72241 * 324.77853 * 17 2 1 45 45 H 1.08999 * 110.71865 * 88.04993 * 17 2 1 46 46 H 1.08996 * 109.88747 * 262.77690 * 18 17 2 47 47 H 1.09003 * 109.88371 * 141.60528 * 18 17 2 48 48 H 0.96999 * 120.00288 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36502 * 217.03506 * 28 19 18 50 50 H 1.09003 * 110.46279 * 94.76070 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1909 1.0347 5 8 1.1158 1.7971 1.9673 6 6 2.3157 3.5756 1.0345 7 6 2.0393 4.4181 2.1054 8 6 2.5442 5.7179 2.0896 9 7 2.2868 6.5960 3.1384 10 6 3.5435 6.9834 3.8289 11 6 3.1578 8.2953 4.5573 12 6 2.2163 8.9885 3.5458 13 6 1.6947 7.8567 2.6412 14 6 3.3088 6.1175 0.9944 15 6 3.5394 5.2208 -0.0319 16 7 3.0492 3.9999 0.0116 17 6 2.0870 -0.8078 -1.2019 18 6 3.4683 -1.2732 -0.6951 19 7 3.4274 -1.2420 0.7743 20 6 4.4642 -1.5651 1.6084 21 1 4.3330 -1.5102 2.6791 22 6 5.6837 -1.9627 1.0782 23 7 5.8436 -2.0298 -0.2266 24 14 7.0982 -2.4027 2.2162 25 1 6.6649 -2.2459 3.6278 26 1 7.5069 -3.8102 1.9766 27 1 8.2476 -1.5012 1.9487 28 6 2.0852 -0.8063 1.2006 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8836 32 1 2.5886 1.6832 -0.7446 33 1 1.4438 4.0710 2.9368 34 1 3.8402 6.2182 4.5460 35 1 4.3394 7.1642 3.1063 36 1 4.0406 8.9068 4.7440 37 1 2.6336 8.0827 5.4890 38 1 2.7678 9.7206 2.9559 39 1 1.3878 9.4693 4.0659 40 1 2.0052 8.0317 1.6110 41 1 0.6074 7.8038 2.6971 42 1 3.7155 7.1169 0.9481 43 1 4.1309 5.5265 -0.8824 44 1 1.4481 -1.6634 -1.4208 45 1 2.1930 -0.1699 -2.0793 46 1 4.2433 -0.5985 -1.0588 47 1 3.6665 -2.2885 -1.0389 48 1 6.6957 -2.3080 -0.5972 49 1 2.1553 -0.1714 2.0840 50 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046451900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:38 Heat of formation + Delta-G solvation = 45.364468 kcal Electronic energy + Delta-G solvation = -30593.001666 eV Core-core repulsion = 26621.152178 eV Total energy + Delta-G solvation = -3971.849488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.03145 -39.74271 -38.57578 -37.08177 -34.00573 -33.60458 -32.00353 -31.29773 -29.92903 -29.50207 -29.31861 -28.59979 -25.63253 -24.96926 -23.60509 -23.32074 -22.15236 -21.34883 -20.55964 -20.03055 -18.94054 -18.12678 -17.06101 -16.89800 -16.37553 -15.79937 -15.67284 -15.18776 -14.97844 -14.66183 -14.55464 -14.43578 -13.92856 -13.84718 -13.58059 -13.23743 -13.17304 -12.81210 -12.72807 -12.64049 -12.17497 -11.98726 -11.85225 -11.79564 -11.72761 -11.62247 -11.59737 -11.02529 -10.86354 -10.82656 -10.41819 -10.29570 -10.02459 -9.96442 -9.88406 -9.69298 -9.59387 -9.29157 -9.27945 -9.00343 -8.57211 -8.45128 -6.72400 -5.63990 -2.95397 0.57790 1.02232 2.90570 3.23196 3.44060 3.49924 3.52484 3.59240 3.89966 4.16462 4.20912 4.36404 4.50246 4.56712 4.66450 4.69666 4.82985 4.96221 5.04848 5.09129 5.21954 5.29033 5.34447 5.39882 5.44505 5.50788 5.54452 5.55301 5.59565 5.68620 5.68817 5.72632 5.80308 5.97584 6.07118 6.19946 6.21894 6.28931 6.32210 6.41169 6.47190 6.60976 6.74772 6.88689 6.91004 7.19119 7.61478 7.64530 7.66329 7.87862 8.03420 8.33408 8.59360 9.30613 9.90780 10.57096 11.48177 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002953 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.158223 B = 9479.452046 C =10754.360591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.154 3.846 3 N -0.678 5.678 4 C 0.572 3.428 5 O -0.532 6.532 6 C 0.099 3.901 7 C -0.090 4.090 8 C 0.120 3.880 9 N -0.483 5.483 10 C 0.038 3.962 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.036 3.964 14 C -0.192 4.192 15 C 0.110 3.890 16 N -0.457 5.457 17 C -0.146 4.146 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.218 4.218 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.131 3.869 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.408 0.592 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.162 0.838 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.044 0.956 48 H 0.250 0.750 49 H 0.055 0.945 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 22.336 1.069 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 N -0.327 5.327 4 C 0.356 3.644 5 O -0.409 6.409 6 C -0.040 4.040 7 C -0.112 4.112 8 C 0.017 3.983 9 N -0.204 5.204 10 C -0.088 4.088 11 C -0.161 4.161 12 C -0.169 4.169 13 C -0.090 4.090 14 C -0.214 4.214 15 C -0.050 4.050 16 N -0.169 5.169 17 C -0.185 4.185 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.740 3.260 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.004 3.996 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.244 0.756 33 H 0.172 0.828 34 H 0.108 0.892 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.152 0.848 43 H 0.179 0.821 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.768 21.074 1.398 22.868 hybrid contribution 1.652 0.946 0.204 1.914 sum -7.116 22.020 1.602 23.197 Atomic orbital electron populations 1.21993 0.94291 1.02229 1.02277 1.21561 0.92598 0.80630 0.98494 1.45644 1.52743 1.12153 1.22145 1.17687 0.80345 0.83554 0.82810 1.90736 1.39562 1.75532 1.35074 1.21312 0.96150 0.95354 0.91222 1.21997 0.98396 0.91714 0.99099 1.19185 0.94945 0.93333 0.90847 1.62255 1.23852 1.11661 1.22683 1.23398 0.89972 0.97718 0.97718 1.22495 0.99463 0.95283 0.98853 1.22413 0.99730 0.97258 0.97495 1.23041 1.00847 0.87486 0.97639 1.22776 1.00635 1.01829 0.96166 1.22615 0.96464 0.88197 0.97706 1.67639 1.07486 1.16597 1.25203 1.23226 1.00496 0.98845 0.95915 1.21154 0.90038 0.99861 0.83671 1.44443 1.07769 1.78830 1.01837 1.19103 0.89370 1.37215 0.88999 0.90585 1.24756 0.97707 1.02197 0.95996 1.69961 1.23927 1.54203 1.09130 0.86070 0.82521 0.77661 0.79734 1.20564 1.21821 1.21927 1.21898 0.87594 0.94896 0.95227 0.93081 0.91707 0.91033 0.75581 0.82832 0.89222 0.92869 0.90608 0.90296 0.91234 0.90580 0.92875 0.89713 0.84802 0.82129 0.90807 0.91671 0.93583 0.93829 0.93988 0.92634 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.62 37.16 0.32 -2.05 16 2 C 0.15 2.87 0.82 -129.67 -0.11 2.76 16 3 N -0.68 -12.31 5.16 -46.44 -0.24 -12.55 16 4 C 0.57 10.57 7.20 -12.17 -0.09 10.48 16 5 O -0.53 -10.82 13.09 5.36 0.07 -10.75 16 6 C 0.10 1.58 6.75 -83.05 -0.56 1.02 16 7 C -0.09 -1.30 9.58 -38.84 -0.37 -1.67 16 8 C 0.12 1.41 4.87 -83.63 -0.41 1.00 16 9 N -0.48 -4.89 5.29 -166.99 -0.88 -5.77 16 10 C 0.04 0.32 6.44 -1.90 -0.01 0.31 16 11 C -0.12 -0.77 7.06 -24.87 -0.18 -0.95 16 12 C -0.13 -0.76 6.93 -25.37 -0.18 -0.94 16 13 C 0.04 0.28 6.50 -2.76 -0.02 0.26 16 14 C -0.19 -1.94 8.01 -39.15 -0.31 -2.26 16 15 C 0.11 1.25 11.17 -17.64 -0.20 1.05 16 16 N -0.46 -6.75 9.54 -9.89 -0.09 -6.84 16 17 C -0.15 -2.71 5.99 -24.90 -0.15 -2.86 16 18 C 0.18 4.34 5.36 -3.06 -0.02 4.32 16 19 N -0.60 -15.95 3.39 -170.07 -0.58 -16.53 16 20 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 21 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 22 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -27.58 10.31 55.49 0.57 -27.01 16 24 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 C 0.13 2.97 6.11 -2.53 -0.02 2.96 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 31 H 0.07 1.22 6.45 -51.93 -0.34 0.88 16 32 H 0.41 7.10 7.82 -40.82 -0.32 6.79 16 33 H 0.15 2.27 7.64 -52.49 -0.40 1.87 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.43 7.11 -51.93 -0.37 0.06 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.39 6.33 -51.92 -0.33 0.06 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.13 1.00 7.16 -52.49 -0.38 0.62 16 43 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 45 H 0.06 1.06 8.05 -51.93 -0.42 0.65 16 46 H 0.05 1.24 7.38 -51.93 -0.38 0.85 16 47 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.06 1.36 6.32 -51.93 -0.33 1.03 16 50 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -33.35 391.97 -10.64 -43.99 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.83 Total: 5.18 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -2.54 Total: 6.52 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -1.22 Total: -68.71 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.75 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.35 -10.64 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046451900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.352 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds