Wall clock time and date at job start Wed Apr 1 2020 03:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 110.88801 * 2 1 4 4 C 1.34781 * 119.99645 * 62.42970 * 3 2 1 5 5 O 1.21508 * 120.00186 * 359.97438 * 4 3 2 6 6 C 1.48186 * 119.99856 * 180.02562 * 4 3 2 7 7 C 1.39032 * 119.69070 * 180.02562 * 6 4 3 8 8 C 1.39447 * 118.95549 * 179.97438 * 7 6 4 9 9 N 1.39188 * 120.83130 * 179.72079 * 8 7 6 10 10 C 1.48537 * 110.99968 * 116.72684 * 9 8 7 11 11 C 1.54935 * 103.22655 * 159.72408 * 10 9 8 12 12 C 1.54598 * 102.92292 * 322.58565 * 11 10 9 13 13 C 1.47897 * 111.00652 * 234.12631 * 9 8 7 14 14 C 1.39416 * 118.33593 * 359.97438 * 8 7 6 15 15 C 1.38227 * 119.26515 * 0.02829 * 14 8 7 16 16 N 1.31642 * 120.99558 * 359.96931 * 15 14 8 17 17 C 1.55155 * 111.03925 * 236.09462 * 2 1 3 18 18 C 1.54319 * 102.94454 * 206.40974 * 17 2 1 19 19 N 1.47030 * 107.27124 * 22.19581 * 18 17 2 20 20 C 1.36932 * 125.64679 * 181.02128 * 19 18 17 21 21 H 1.08008 * 119.99819 * 180.02562 * 20 19 18 22 22 C 1.38804 * 120.00427 * 0.04153 * 20 19 18 23 23 N 1.31620 * 119.99981 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00342 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47016 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47220 * 119.99921 * 24 22 20 27 27 H 1.48504 * 109.47552 * 240.00031 * 24 22 20 28 28 C 1.47418 * 108.70010 * 1.05764 * 19 18 17 29 29 H 1.09007 * 109.46878 * 60.69733 * 1 2 3 30 30 H 1.08998 * 109.47552 * 180.69910 * 1 2 3 31 31 H 1.09001 * 109.47107 * 300.70240 * 1 2 3 32 32 H 0.96999 * 120.00063 * 242.42065 * 3 2 1 33 33 H 1.08002 * 120.51588 * 0.02562 * 7 6 4 34 34 H 1.08993 * 110.66904 * 278.15966 * 10 9 8 35 35 H 1.09004 * 110.66201 * 41.28994 * 10 9 8 36 36 H 1.09000 * 110.72404 * 204.23227 * 11 10 9 37 37 H 1.08998 * 110.87859 * 81.01596 * 11 10 9 38 38 H 1.08996 * 110.31451 * 263.04623 * 12 11 10 39 39 H 1.09002 * 110.39488 * 140.91192 * 12 11 10 40 40 H 1.09008 * 109.91294 * 333.51636 * 13 9 8 41 41 H 1.09000 * 109.91727 * 94.59946 * 13 9 8 42 42 H 1.08000 * 120.36413 * 179.97438 * 14 8 7 43 43 H 1.08007 * 119.50206 * 179.97438 * 15 14 8 44 44 H 1.08998 * 110.72241 * 324.77853 * 17 2 1 45 45 H 1.08999 * 110.71865 * 88.04993 * 17 2 1 46 46 H 1.08996 * 109.88747 * 262.77690 * 18 17 2 47 47 H 1.09003 * 109.88371 * 141.60528 * 18 17 2 48 48 H 0.96999 * 120.00288 * 180.02562 * 23 22 20 49 49 H 1.09005 * 110.36502 * 217.03506 * 28 19 18 50 50 H 1.09003 * 110.46279 * 94.76070 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3688 0.0000 4 6 1.7878 2.1909 1.0347 5 8 1.1158 1.7971 1.9673 6 6 2.3157 3.5756 1.0345 7 6 2.0393 4.4181 2.1054 8 6 2.5442 5.7179 2.0896 9 7 2.2868 6.5960 3.1384 10 6 3.5435 6.9834 3.8289 11 6 3.1578 8.2953 4.5573 12 6 2.2163 8.9885 3.5458 13 6 1.6947 7.8567 2.6412 14 6 3.3088 6.1175 0.9944 15 6 3.5394 5.2208 -0.0319 16 7 3.0492 3.9999 0.0116 17 6 2.0870 -0.8078 -1.2019 18 6 3.4683 -1.2732 -0.6951 19 7 3.4274 -1.2420 0.7743 20 6 4.4642 -1.5651 1.6084 21 1 4.3330 -1.5102 2.6791 22 6 5.6837 -1.9627 1.0782 23 7 5.8436 -2.0298 -0.2266 24 14 7.0982 -2.4027 2.2162 25 1 6.6649 -2.2459 3.6278 26 1 7.5069 -3.8102 1.9766 27 1 8.2476 -1.5012 1.9487 28 6 2.0852 -0.8063 1.2006 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3633 0.5247 0.8836 32 1 2.5886 1.6832 -0.7446 33 1 1.4438 4.0710 2.9368 34 1 3.8402 6.2182 4.5460 35 1 4.3394 7.1642 3.1063 36 1 4.0406 8.9068 4.7440 37 1 2.6336 8.0827 5.4890 38 1 2.7678 9.7206 2.9559 39 1 1.3878 9.4693 4.0659 40 1 2.0052 8.0317 1.6110 41 1 0.6074 7.8038 2.6971 42 1 3.7155 7.1169 0.9481 43 1 4.1309 5.5265 -0.8824 44 1 1.4481 -1.6634 -1.4208 45 1 2.1930 -0.1699 -2.0793 46 1 4.2433 -0.5985 -1.0588 47 1 3.6665 -2.2885 -1.0389 48 1 6.6957 -2.3080 -0.5972 49 1 2.1553 -0.1714 2.0840 50 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046451900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:37 Heat of formation + Delta-G solvation = 22.439902 kcal Electronic energy + Delta-G solvation = -30593.995750 eV Core-core repulsion = 26621.152178 eV Total energy + Delta-G solvation = -3972.843572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03835 -41.03606 -39.55843 -38.65297 -35.73389 -34.53655 -33.62297 -32.59973 -31.53396 -30.40882 -30.28745 -29.90228 -27.53357 -26.16560 -25.28446 -24.27463 -23.15934 -22.20768 -21.87187 -21.42339 -20.43534 -19.34065 -18.72616 -18.03595 -17.42522 -17.06319 -16.70701 -16.63365 -16.30923 -16.20488 -15.77209 -15.62218 -15.31305 -15.04267 -14.92047 -14.59442 -14.18733 -13.91861 -13.90311 -13.58110 -13.50991 -13.38400 -13.35663 -13.10701 -13.00010 -12.86344 -12.76314 -12.29969 -12.18308 -12.16102 -12.04190 -11.99075 -11.72149 -11.59997 -11.48571 -11.13779 -10.72844 -10.62328 -10.59416 -10.34008 -9.98197 -9.71896 -8.87217 -7.86590 -5.20369 -0.46693 0.06093 1.41368 1.42253 1.52950 1.67294 2.04709 2.46785 2.71225 2.76268 3.09285 3.31406 3.56623 3.58908 3.69787 3.77375 3.83088 3.84154 3.92621 4.03919 4.08897 4.18003 4.20478 4.25216 4.43427 4.52896 4.63263 4.67752 4.70599 4.71217 4.78896 4.81640 4.85979 4.91640 4.92553 4.99739 5.01360 5.02666 5.06989 5.17621 5.25193 5.34282 5.37726 5.41231 5.62572 5.67318 5.68696 5.76308 6.10597 6.19144 6.46027 6.77453 7.10563 7.18947 7.76313 8.40998 9.23544 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002953 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.158223 B = 9479.452046 C =10754.360591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.162 3.838 3 N -0.678 5.678 4 C 0.566 3.434 5 O -0.561 6.561 6 C 0.074 3.926 7 C -0.104 4.104 8 C 0.124 3.876 9 N -0.502 5.502 10 C 0.033 3.967 11 C -0.118 4.118 12 C -0.124 4.124 13 C 0.033 3.967 14 C -0.171 4.171 15 C 0.109 3.891 16 N -0.479 5.479 17 C -0.128 4.128 18 C 0.186 3.814 19 N -0.621 5.621 20 C -0.241 4.241 21 H 0.068 0.932 22 C -0.061 4.061 23 N -0.945 5.945 24 Si 0.974 3.026 25 H -0.273 1.273 26 H -0.287 1.287 27 H -0.290 1.290 28 C 0.127 3.873 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.412 0.588 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.171 0.829 43 H 0.197 0.803 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.014 0.986 47 H 0.011 0.989 48 H 0.247 0.753 49 H 0.030 0.970 50 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.164 25.023 0.311 26.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 N -0.328 5.328 4 C 0.352 3.648 5 O -0.440 6.440 6 C -0.064 4.064 7 C -0.127 4.127 8 C 0.021 3.979 9 N -0.224 5.224 10 C -0.092 4.092 11 C -0.156 4.156 12 C -0.162 4.162 13 C -0.093 4.093 14 C -0.193 4.193 15 C -0.051 4.051 16 N -0.191 5.191 17 C -0.166 4.166 18 C 0.061 3.939 19 N -0.347 5.347 20 C -0.370 4.370 21 H 0.086 0.914 22 C -0.254 4.254 23 N -0.594 5.594 24 Si 0.803 3.197 25 H -0.198 1.198 26 H -0.214 1.214 27 H -0.216 1.216 28 C 0.001 3.999 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.154 0.846 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.189 0.811 43 H 0.213 0.787 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.057 0.943 49 H 0.049 0.951 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.664 23.774 0.642 25.312 hybrid contribution 1.638 0.198 0.497 1.723 sum -7.026 23.973 1.138 25.007 Atomic orbital electron populations 1.21919 0.91562 1.03422 1.02856 1.21492 0.94393 0.80462 0.96103 1.45655 1.52882 1.11871 1.22368 1.18142 0.79790 0.84667 0.82218 1.90702 1.40883 1.76479 1.35951 1.20943 0.98257 0.94424 0.92762 1.21943 0.99171 0.93141 0.98408 1.19279 0.94328 0.92527 0.91789 1.62221 1.24926 1.12747 1.22544 1.23472 0.89560 0.98454 0.97736 1.22490 1.00303 0.94303 0.98484 1.22413 0.99970 0.96699 0.97134 1.23139 1.00552 0.86989 0.98605 1.23115 0.98644 1.03038 0.94499 1.23265 0.95771 0.87112 0.98990 1.67592 1.08017 1.18482 1.24985 1.23110 0.96955 1.00038 0.96531 1.20930 0.92839 0.97395 0.82703 1.44690 1.08540 1.78818 1.02644 1.19350 0.90746 1.37634 0.89248 0.91447 1.25546 0.99951 1.02348 0.97575 1.70162 1.24193 1.54594 1.10473 0.85071 0.79179 0.77259 0.78207 1.19802 1.21352 1.21649 1.22009 0.86399 0.95156 0.96324 0.90497 0.90137 0.92484 0.75181 0.84566 0.90742 0.91981 0.88765 0.90854 0.89414 0.89828 0.91937 0.90262 0.81122 0.78665 0.88481 0.88714 0.96773 0.97041 0.94318 0.95144 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.62 71.98 0.62 -3.59 16 2 C 0.16 6.01 0.82 4.99 0.00 6.02 16 3 N -0.68 -24.96 5.16 -419.14 -2.16 -27.13 16 4 C 0.57 21.72 7.20 86.89 0.63 22.34 16 5 O -0.56 -24.04 13.09 -3.74 -0.05 -24.09 16 6 C 0.07 2.42 6.75 41.83 0.28 2.70 16 7 C -0.10 -3.11 9.58 22.75 0.22 -2.89 16 8 C 0.12 2.79 4.87 38.55 0.19 2.98 16 9 N -0.50 -9.60 5.29 -682.23 -3.61 -13.21 16 10 C 0.03 0.51 6.44 86.65 0.56 1.07 16 11 C -0.12 -1.21 7.06 31.80 0.22 -0.98 16 12 C -0.12 -1.07 6.93 31.47 0.22 -0.85 16 13 C 0.03 0.44 6.50 86.45 0.56 1.00 16 14 C -0.17 -3.00 8.01 22.55 0.18 -2.81 16 15 C 0.11 2.21 11.17 84.72 0.95 3.16 16 16 N -0.48 -13.87 9.54 -185.21 -1.77 -15.63 16 17 C -0.13 -4.61 5.99 31.78 0.19 -4.42 16 18 C 0.19 9.33 5.36 86.73 0.47 9.79 16 19 N -0.62 -33.99 3.39 -691.98 -2.35 -36.34 16 20 C -0.24 -14.48 10.28 84.03 0.86 -13.62 16 21 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 23 N -0.95 -57.93 10.31 21.65 0.22 -57.71 16 24 Si 0.97 47.96 29.55 68.60 2.03 49.99 16 25 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 C 0.13 5.96 6.11 86.86 0.53 6.49 16 29 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 31 H 0.06 1.92 6.45 -2.39 -0.02 1.91 16 32 H 0.41 14.38 7.82 -92.71 -0.72 13.66 16 33 H 0.14 4.39 7.64 -2.91 -0.02 4.37 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 0.84 7.11 -2.38 -0.02 0.82 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.06 0.71 6.33 -2.38 -0.02 0.69 16 41 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.17 1.73 7.16 -2.91 -0.02 1.71 16 43 H 0.20 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.10 3.09 8.04 -2.39 -0.02 3.07 16 45 H 0.09 2.88 8.05 -2.39 -0.02 2.86 16 46 H 0.01 0.78 7.38 -2.39 -0.02 0.77 16 47 H 0.01 0.64 7.51 -2.39 -0.02 0.62 16 48 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 49 H 0.03 1.57 6.32 -2.38 -0.02 1.55 16 50 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 Total: -1.00 -76.57 391.97 -0.32 -76.89 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.23 Total: 24.00 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 7.14 Total: 23.23 kcal Atomic # 7 Polarization: -140.35 SS G_CDS: -9.66 Total: -150.01 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.05 Total: -24.09 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -76.57 -0.32 -76.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046451900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.325 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds