Wall clock time and date at job start Wed Apr 1 2020 03:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 110.64519 * 2 1 4 4 C 1.34772 * 120.00177 * 298.31491 * 3 2 1 5 5 O 1.21479 * 120.00002 * 359.97438 * 4 3 2 6 6 C 1.48457 * 120.00541 * 179.97438 * 4 3 2 7 7 C 1.39535 * 120.55645 * 179.97438 * 6 4 3 8 8 C 1.38758 * 118.26513 * 179.97438 * 7 6 4 9 9 N 1.32203 * 119.14569 * 0.25655 * 8 7 6 10 10 C 1.31884 * 121.03821 * 359.48416 * 9 8 7 11 11 C 1.50697 * 119.03918 * 180.24817 * 10 9 8 12 12 C 1.54265 * 110.03593 * 58.18476 * 11 10 9 13 13 C 1.54964 * 104.15835 * 217.13785 * 12 11 10 14 14 C 1.54891 * 102.78007 * 37.88119 * 13 12 11 15 15 C 1.53881 * 110.03351 * 300.96148 * 11 10 9 16 16 N 1.31582 * 121.91374 * 0.52682 * 10 9 8 17 17 C 1.55160 * 110.87136 * 123.25511 * 2 1 3 18 18 C 1.54902 * 101.58385 * 153.93575 * 17 2 1 19 19 N 1.47428 * 104.83233 * 322.98601 * 18 17 2 20 20 C 1.36938 * 125.64698 * 204.09472 * 19 18 17 21 21 H 1.08000 * 119.99542 * 180.02562 * 20 19 18 22 22 C 1.38808 * 120.00158 * 0.03919 * 20 19 18 23 23 N 1.31621 * 120.00264 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99902 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46990 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46768 * 120.00081 * 24 22 20 27 27 H 1.48494 * 109.47248 * 240.00265 * 24 22 20 28 28 C 1.47019 * 108.70133 * 24.13002 * 19 18 17 29 29 H 1.09002 * 109.46469 * 59.29730 * 1 2 3 30 30 H 1.08998 * 109.47039 * 179.29603 * 1 2 3 31 31 H 1.08998 * 109.47303 * 299.29823 * 1 2 3 32 32 H 0.97001 * 120.00147 * 118.30815 * 3 2 1 33 33 H 1.07998 * 120.86108 * 0.02562 * 7 6 4 34 34 H 1.08002 * 120.42235 * 179.97438 * 8 7 6 35 35 H 1.09000 * 110.01577 * 179.57185 * 11 10 9 36 36 H 1.08996 * 110.48385 * 335.77560 * 12 11 10 37 37 H 1.08994 * 110.49098 * 98.42328 * 12 11 10 38 38 H 1.09004 * 110.71537 * 279.56932 * 13 12 11 39 39 H 1.09004 * 110.76812 * 156.22276 * 13 12 11 40 40 H 1.09002 * 110.48658 * 203.40391 * 14 13 12 41 41 H 1.09003 * 110.48224 * 80.76834 * 14 13 12 42 42 H 1.09002 * 110.03070 * 238.57630 * 15 11 10 43 43 H 1.09001 * 110.02990 * 0.02562 * 15 11 10 44 44 H 1.09003 * 110.99869 * 272.00660 * 17 2 1 45 45 H 1.08996 * 111.00345 * 35.85511 * 17 2 1 46 46 H 1.09004 * 110.36933 * 204.14746 * 18 17 2 47 47 H 1.09000 * 110.46305 * 81.86866 * 18 17 2 48 48 H 0.96994 * 120.00209 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.88637 * 239.52377 * 28 19 18 50 50 H 1.09002 * 110.01144 * 118.43108 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7661 2.1967 -1.0275 5 8 1.0854 1.8041 -1.9539 6 6 2.2890 3.5861 -1.0273 7 6 2.0062 4.4507 -2.0854 8 6 2.5187 5.7392 -2.0361 9 7 3.2558 6.0997 -0.9995 10 6 3.5000 5.2587 -0.0134 11 6 4.3412 5.7190 1.1491 12 6 3.6967 6.9540 1.8117 13 6 4.9022 7.8400 2.2156 14 6 5.8812 7.6472 1.0309 15 6 5.7298 6.1593 0.6532 16 7 3.0349 4.0278 -0.0177 17 6 2.0828 -0.7950 1.2124 18 6 3.4673 -1.2456 0.6837 19 7 3.2470 -1.5462 -0.7427 20 6 4.0077 -2.3901 -1.5072 21 1 3.7632 -2.5438 -2.5479 22 6 5.0926 -3.0482 -0.9445 23 7 5.3900 -2.8615 0.3240 24 14 6.1298 -4.2000 -1.9873 25 1 5.5901 -4.2367 -3.3702 26 1 7.5324 -3.7133 -2.0164 27 1 6.0915 -5.5652 -1.4042 28 6 2.0760 -0.7892 -1.2086 29 1 -0.3632 0.5247 -0.8837 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 2.5903 1.6843 0.7396 33 1 1.4034 4.1256 -2.9205 34 1 2.3217 6.4371 -2.8365 35 1 4.4427 4.9147 1.8777 36 1 3.0590 7.4792 1.1006 37 1 3.1260 6.6602 2.6926 38 1 5.3467 7.4855 3.1456 39 1 4.6023 8.8843 2.3030 40 1 6.9039 7.8595 1.3427 41 1 5.5968 8.2843 0.1935 42 1 6.5052 5.5692 1.1418 43 1 5.7950 6.0404 -0.4283 44 1 2.1887 -0.1517 2.0859 45 1 1.4514 -1.6547 1.4365 46 1 3.8031 -2.1380 1.2119 47 1 4.1969 -0.4434 0.7940 48 1 6.1479 -3.3216 0.7173 49 1 1.3140 -1.4753 -1.5782 50 1 2.3686 -0.0993 -2.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046738957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:46:55 Heat of formation + Delta-G solvation = 33.310371 kcal Electronic energy + Delta-G solvation = -30597.846608 eV Core-core repulsion = 26625.474415 eV Total energy + Delta-G solvation = -3972.372193 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.50435 -39.81849 -38.11778 -37.27126 -34.29178 -33.85076 -32.64298 -31.76597 -29.97440 -28.92516 -28.81198 -28.67566 -25.87810 -25.57757 -23.99074 -23.56290 -21.72720 -20.88131 -20.40849 -19.90802 -19.10464 -18.04966 -17.79663 -16.83108 -16.02629 -15.65390 -15.58529 -15.48451 -15.39586 -14.68613 -14.58858 -14.35619 -14.01993 -13.68350 -13.58960 -13.48099 -13.10885 -12.79602 -12.26624 -12.09379 -11.98267 -11.76139 -11.74952 -11.56436 -11.33853 -11.30544 -11.00813 -10.99469 -10.92821 -10.88178 -10.85109 -10.73706 -10.51056 -10.36063 -10.14388 -10.05160 -9.79383 -9.64839 -9.60629 -9.28125 -8.70454 -8.63161 -6.79996 -5.63795 -3.04304 0.40244 0.74530 2.81489 3.10420 3.40956 3.46750 3.49240 3.55799 3.68660 3.83654 4.41090 4.44485 4.47213 4.52229 4.58570 4.77678 4.87771 5.10975 5.18113 5.22519 5.28666 5.35664 5.36811 5.38998 5.46147 5.49572 5.55351 5.56418 5.66586 5.69272 5.73195 5.83963 5.96456 5.99944 6.07770 6.11713 6.13746 6.16835 6.21589 6.32999 6.43407 6.48814 6.65965 6.67788 6.81653 7.08206 7.48182 7.64196 7.68457 7.83559 7.88486 8.31866 8.37883 9.24402 9.85034 10.49787 11.40526 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011261 B = 0.002933 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.830975 B = 9544.346299 C =10578.962866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 N -0.680 5.680 4 C 0.568 3.432 5 O -0.523 6.523 6 C 0.142 3.858 7 C -0.179 4.179 8 C 0.149 3.851 9 N -0.501 5.501 10 C 0.325 3.675 11 C -0.026 4.026 12 C -0.112 4.112 13 C -0.122 4.122 14 C -0.120 4.120 15 C -0.110 4.110 16 N -0.492 5.492 17 C -0.145 4.145 18 C 0.152 3.848 19 N -0.604 5.604 20 C -0.217 4.217 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.137 3.863 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.409 0.591 33 H 0.160 0.840 34 H 0.175 0.825 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.011 0.989 48 H 0.251 0.749 49 H 0.032 0.968 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 21.434 3.603 22.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.330 5.330 4 C 0.351 3.649 5 O -0.398 6.398 6 C -0.006 4.006 7 C -0.202 4.202 8 C -0.018 4.018 9 N -0.215 5.215 10 C 0.058 3.942 11 C -0.047 4.047 12 C -0.150 4.150 13 C -0.160 4.160 14 C -0.157 4.157 15 C -0.149 4.149 16 N -0.208 5.208 17 C -0.184 4.184 18 C 0.027 3.973 19 N -0.330 5.330 20 C -0.345 4.345 21 H 0.095 0.905 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.010 3.990 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.245 0.755 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.029 0.971 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.333 21.206 3.704 22.178 hybrid contribution 0.355 -0.710 -1.078 1.339 sum -4.978 20.496 2.626 21.254 Atomic orbital electron populations 1.22038 0.94039 1.02504 1.02226 1.21478 0.93108 0.79901 0.98512 1.45857 1.52180 1.12317 1.22678 1.17715 0.80746 0.83335 0.83092 1.90763 1.38613 1.75343 1.35107 1.21843 0.92777 0.95470 0.90538 1.22969 1.01553 0.95093 1.00562 1.23322 0.89606 0.93929 0.94989 1.68079 1.14086 1.37496 1.01874 1.23084 0.92624 0.84816 0.93716 1.20698 0.93092 0.98947 0.91929 1.22429 0.97947 0.94598 1.00027 1.22490 0.95635 0.99532 0.98301 1.22323 0.99201 0.95991 0.98207 1.22133 0.94676 0.96538 1.01521 1.68225 1.09487 1.16729 1.26377 1.23357 1.01269 0.98796 0.95011 1.21946 0.89373 1.00728 0.85224 1.44510 1.30513 1.50495 1.07489 1.19133 1.05936 1.16512 0.92955 0.90507 1.24764 0.98771 1.00786 0.96481 1.69784 1.29986 1.46540 1.10952 0.86001 0.80030 0.80365 0.79162 1.20556 1.21837 1.21735 1.21598 0.90425 0.93185 0.93780 0.91088 0.91438 0.93009 0.75526 0.82224 0.80756 0.88042 0.90680 0.91334 0.91309 0.91415 0.91657 0.91266 0.91018 0.91494 0.91744 0.90323 0.87362 0.97055 0.93856 0.94993 0.94906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.45 37.16 0.31 -2.03 16 2 C 0.16 2.83 0.81 -129.98 -0.11 2.72 16 3 N -0.68 -11.56 5.14 -46.65 -0.24 -11.80 16 4 C 0.57 9.69 7.05 -12.05 -0.08 9.61 16 5 O -0.52 -9.88 13.34 5.38 0.07 -9.81 16 6 C 0.14 2.09 6.79 -82.63 -0.56 1.53 16 7 C -0.18 -2.15 9.72 -38.91 -0.38 -2.52 16 8 C 0.15 1.50 11.31 -17.20 -0.19 1.30 16 9 N -0.50 -5.81 9.39 -10.74 -0.10 -5.91 16 10 C 0.33 4.07 6.16 -157.30 -0.97 3.10 16 11 C -0.03 -0.27 3.29 -90.65 -0.30 -0.57 16 12 C -0.11 -0.95 6.33 -25.03 -0.16 -1.11 16 13 C -0.12 -0.87 6.91 -24.70 -0.17 -1.04 16 14 C -0.12 -0.92 6.83 -25.08 -0.17 -1.10 16 15 C -0.11 -1.05 6.35 -25.61 -0.16 -1.21 16 16 N -0.49 -7.00 9.58 -7.32 -0.07 -7.07 16 17 C -0.15 -2.68 6.09 -24.58 -0.15 -2.82 16 18 C 0.15 3.66 5.87 -2.53 -0.01 3.64 16 19 N -0.60 -15.83 3.39 -170.07 -0.58 -16.40 16 20 C -0.22 -6.21 10.27 -15.06 -0.15 -6.36 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 23 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.14 3.08 6.13 -3.06 -0.02 3.06 16 29 H 0.07 1.18 6.38 -51.93 -0.33 0.84 16 30 H 0.07 1.01 8.12 -51.93 -0.42 0.58 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.41 6.53 7.86 -40.82 -0.32 6.21 16 33 H 0.16 1.72 7.74 -52.49 -0.41 1.31 16 34 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.07 0.70 7.42 -51.93 -0.39 0.32 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 44 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 45 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 46 H 0.11 2.92 5.87 -51.93 -0.30 2.62 16 47 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.03 0.72 7.80 -51.93 -0.41 0.32 16 50 H 0.03 0.80 6.47 -51.93 -0.34 0.47 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -32.40 394.35 -10.72 -43.11 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.91 Total: 5.15 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: -3.37 Total: 5.75 kcal Atomic # 7 Polarization: -67.17 SS G_CDS: -0.43 Total: -67.60 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.40 -10.72 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046738957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.425 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds