Wall clock time and date at job start Wed Apr 1 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38552 * 120.02018 * 2 1 4 4 C 1.40066 * 117.81889 * 180.25766 * 3 2 1 5 5 C 1.48137 * 121.14445 * 179.73996 * 4 3 2 6 6 O 1.21520 * 120.00133 * 174.01194 * 5 4 3 7 7 N 1.34777 * 120.00075 * 354.01001 * 5 4 3 8 8 C 1.46500 * 119.99751 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46761 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.43485 * 59.46862 * 9 8 7 11 11 C 1.53151 * 109.43290 * 179.33039 * 9 8 7 12 12 C 1.54250 * 108.84446 * 66.08353 * 11 9 8 13 13 H 1.08999 * 112.33159 * 187.68906 * 12 11 9 14 14 C 1.54608 * 107.85718 * 312.47776 * 12 11 9 15 15 C 1.53796 * 104.85347 * 88.46916 * 14 12 11 16 16 C 1.54604 * 104.84685 * 359.97438 * 15 14 12 17 17 H 1.09005 * 112.69803 * 146.96387 * 16 15 14 18 18 C 1.53145 * 109.43328 * 299.55086 * 9 8 7 19 19 N 1.48297 * 104.26436 * 25.02650 * 16 15 14 20 20 C 1.36932 * 128.21657 * 138.35669 * 19 16 15 21 21 H 1.08010 * 119.99671 * 335.36007 * 20 19 16 22 22 C 1.38811 * 120.00305 * 155.34780 * 20 19 16 23 23 N 1.31614 * 120.00127 * 354.88899 * 22 20 19 24 24 Si 1.86805 * 119.99878 * 174.88697 * 22 20 19 25 25 H 1.48502 * 109.47051 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47024 * 300.00347 * 24 22 20 27 27 H 1.48495 * 109.46989 * 60.00560 * 24 22 20 28 28 C 1.39768 * 117.70877 * 359.47284 * 4 3 2 29 29 C 1.50699 * 120.17353 * 180.29632 * 28 4 3 30 30 N 1.31894 * 119.65506 * 0.26654 * 28 4 3 31 31 N 1.28280 * 122.32794 * 0.02562 * 30 28 4 32 32 H 1.08996 * 109.47378 * 270.28340 * 1 2 3 33 33 H 1.09005 * 109.46665 * 30.28146 * 1 2 3 34 34 H 1.09001 * 109.46900 * 150.27743 * 1 2 3 35 35 H 1.08005 * 121.08858 * 0.02562 * 3 2 1 36 36 H 0.97002 * 119.99876 * 0.02562 * 7 5 4 37 37 H 1.09007 * 109.47054 * 60.00464 * 8 7 5 38 38 H 1.08996 * 109.47804 * 300.00327 * 8 7 5 39 39 H 1.09000 * 109.56995 * 185.99395 * 11 9 8 40 40 H 1.08998 * 109.56722 * 306.23727 * 11 9 8 41 41 H 1.09001 * 110.37963 * 207.17271 * 14 12 11 42 42 H 1.09002 * 110.38215 * 329.53489 * 14 12 11 43 43 H 1.08995 * 110.43090 * 241.09860 * 15 14 12 44 44 H 1.08994 * 110.23584 * 118.79558 * 15 14 12 45 45 H 1.09003 * 109.57019 * 174.00817 * 18 9 8 46 46 H 1.08998 * 109.67011 * 53.70726 * 18 9 8 47 47 H 0.96996 * 120.00252 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.47264 * 93.78241 * 29 28 4 49 49 H 1.09001 * 109.47238 * 213.78402 * 29 28 4 50 50 H 1.09000 * 109.46975 * 333.78192 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1996 0.0000 4 6 3.5998 1.1459 -0.0056 5 6 4.4141 2.3833 -0.0117 6 8 5.6228 2.3159 0.0933 7 7 3.8143 3.5841 -0.1338 8 6 4.6196 4.8079 -0.1393 9 6 3.7008 6.0223 -0.2884 10 1 2.9941 6.0463 0.5411 11 6 4.5419 7.3020 -0.2772 12 6 5.4305 7.3252 -1.5379 13 1 6.1498 8.1440 -1.5226 14 6 6.1056 5.9404 -1.6676 15 6 5.1144 5.0935 -2.4835 16 6 3.9283 6.0417 -2.7736 17 1 3.4581 5.8446 -3.7370 18 6 2.9328 5.9210 -1.6095 19 7 4.5210 7.3994 -2.7066 20 6 4.2886 8.4669 -3.5322 21 1 3.9422 8.3031 -4.5420 22 6 4.4978 9.7594 -3.0712 23 7 4.8222 9.9646 -1.8123 24 14 4.3191 11.2074 -4.2377 25 1 4.5934 12.4698 -3.5053 26 1 5.2857 11.0644 -5.3560 27 1 2.9368 11.2391 -4.7792 28 6 4.2017 -0.1156 0.0006 29 6 5.7037 -0.2381 0.0018 30 7 3.4483 -1.1981 0.0060 31 7 2.1667 -1.1420 0.0053 32 1 -0.3634 0.0051 1.0276 33 1 -0.3633 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6784 2.1453 0.0004 36 1 2.8494 3.6380 -0.2173 37 1 5.3207 4.7778 -0.9734 38 1 5.1721 4.8836 0.7972 39 1 3.8842 8.1712 -0.2761 40 1 5.1701 7.3183 0.6134 41 1 7.0531 6.0284 -2.1993 42 1 6.2614 5.5003 -0.6827 43 1 4.7798 4.2343 -1.9023 44 1 5.5759 4.7663 -3.4151 45 1 2.2014 6.7270 -1.6693 46 1 2.4220 4.9597 -1.6642 47 1 4.9688 10.8677 -1.4902 48 1 6.0599 -0.3304 1.0278 49 1 5.9967 -1.1216 -0.5653 50 1 6.1410 0.6491 -0.4562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048528545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:23 Heat of formation + Delta-G solvation = 140.864238 kcal Electronic energy + Delta-G solvation = -31533.383038 eV Core-core repulsion = 27565.674730 eV Total energy + Delta-G solvation = -3967.708308 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.76360 -41.15895 -39.09055 -35.29933 -34.50311 -33.87181 -32.83108 -31.59579 -30.77664 -30.21853 -29.56641 -27.06749 -26.88597 -25.19000 -23.73966 -23.33202 -22.80093 -20.93932 -20.80224 -19.49387 -18.91815 -17.99940 -17.81918 -17.05023 -16.16433 -15.94150 -15.81201 -15.45829 -14.89732 -14.78757 -14.38824 -13.99988 -13.71476 -13.59601 -13.43651 -13.11649 -12.95199 -12.80150 -12.72756 -12.62058 -12.35393 -12.01321 -11.78377 -11.60353 -11.46140 -11.31447 -11.24468 -10.90734 -10.85218 -10.61740 -10.51640 -10.50056 -10.20465 -9.88861 -9.80745 -9.74504 -9.60832 -9.49690 -9.41853 -9.28141 -8.64445 -8.30918 -6.75894 -5.86158 -3.24784 0.05158 0.54095 2.58426 2.94622 3.31728 3.33846 3.39468 3.39794 3.63012 3.95708 4.07814 4.30925 4.40919 4.48803 4.79421 4.92548 5.13140 5.13764 5.17990 5.20477 5.32871 5.41158 5.44222 5.47665 5.51216 5.54948 5.66324 5.73244 5.75923 5.81264 5.87634 5.96989 6.00823 6.05346 6.14272 6.20587 6.31711 6.35304 6.46958 6.54922 6.57811 6.65871 6.78594 6.88590 6.99459 7.05496 7.34575 7.48386 7.56498 7.70502 8.02280 8.19763 8.39290 9.07004 9.68221 10.52035 11.27594 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.002710 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.684793 B =10328.423145 C =10916.875108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.056 3.944 3 C -0.083 4.083 4 C -0.126 4.126 5 C 0.554 3.446 6 O -0.520 6.520 7 N -0.707 5.707 8 C 0.000 4.000 9 C -0.086 4.086 10 H 0.051 0.949 11 C -0.109 4.109 12 C 0.186 3.814 13 H 0.097 0.903 14 C -0.173 4.173 15 C -0.162 4.162 16 C 0.150 3.850 17 H 0.064 0.936 18 C -0.123 4.123 19 N -0.581 5.581 20 C -0.231 4.231 21 H 0.069 0.931 22 C 0.004 3.996 23 N -0.906 5.906 24 Si 0.908 3.092 25 H -0.290 1.290 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.118 3.882 29 C -0.120 4.120 30 N -0.243 5.243 31 N -0.227 5.227 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.153 0.847 36 H 0.393 0.607 37 H 0.199 0.801 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.254 0.746 48 H 0.085 0.915 49 H 0.075 0.925 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 -15.750 5.322 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.088 4.088 3 C -0.113 4.113 4 C -0.140 4.140 5 C 0.339 3.661 6 O -0.397 6.397 7 N -0.358 5.358 8 C -0.117 4.117 9 C -0.105 4.105 10 H 0.069 0.931 11 C -0.148 4.148 12 C 0.079 3.921 13 H 0.115 0.885 14 C -0.211 4.211 15 C -0.201 4.201 16 C 0.042 3.958 17 H 0.083 0.917 18 C -0.163 4.163 19 N -0.302 5.302 20 C -0.359 4.359 21 H 0.087 0.913 22 C -0.194 4.194 23 N -0.551 5.551 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.026 4.026 29 C -0.177 4.177 30 N -0.086 5.086 31 N -0.070 5.070 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.228 0.772 37 H 0.214 0.786 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.644 -17.103 5.390 18.524 hybrid contribution -0.903 2.456 -0.285 2.632 sum -5.547 -14.646 5.105 16.473 Atomic orbital electron populations 1.20701 0.86958 1.04396 1.03814 1.22855 0.99312 0.89937 0.96738 1.22555 0.93428 1.00454 0.94871 1.21216 0.94307 0.96061 1.02454 1.17836 0.87381 0.82856 0.78021 1.90681 1.13421 1.86058 1.49582 1.46348 1.11102 1.06306 1.72029 1.25434 0.97198 0.81528 1.07586 1.21295 0.97027 0.95008 0.97197 0.93061 1.22140 0.98962 0.95586 0.98147 1.21411 0.91524 0.92652 0.86546 0.88505 1.23416 0.98621 0.99516 0.99543 1.23306 0.98136 0.99103 0.99517 1.21513 0.91609 0.87417 0.95262 0.91737 1.22174 0.98637 0.99234 0.96222 1.45049 1.45371 1.07236 1.32578 1.18857 1.41110 0.83556 0.92404 0.91294 1.25018 1.01307 0.97327 0.95794 1.69864 1.51768 1.20316 1.13140 0.86289 0.78004 0.81963 0.79964 1.21617 1.21104 1.21060 1.23163 0.99792 0.88432 0.91237 1.21223 0.86458 1.05833 1.04234 1.73052 0.98883 1.26455 1.10162 1.72804 1.01913 1.24947 1.07330 0.89713 0.89961 0.89709 0.82906 0.77178 0.78595 0.92676 0.89494 0.94233 0.92553 0.89392 0.89073 0.92914 0.91643 0.94429 0.93578 0.89650 0.90637 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.19 36.01 0.37 -0.22 16 2 C 0.06 0.54 6.86 -82.45 -0.57 -0.03 16 3 C -0.08 -0.76 9.35 -38.78 -0.36 -1.12 16 4 C -0.13 -1.45 5.92 -104.58 -0.62 -2.07 16 5 C 0.55 7.09 7.51 -12.20 -0.09 7.00 16 6 O -0.52 -7.87 13.34 5.35 0.07 -7.80 16 7 N -0.71 -8.37 4.36 -61.15 -0.27 -8.64 16 8 C 0.00 0.01 2.67 -4.04 -0.01 0.00 16 9 C -0.09 -1.36 2.76 -90.47 -0.25 -1.61 16 10 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 11 C -0.11 -2.11 5.21 -26.00 -0.14 -2.24 16 12 C 0.19 3.96 3.13 -65.45 -0.21 3.75 16 13 H 0.10 2.40 6.89 -51.93 -0.36 2.04 16 14 C -0.17 -3.06 5.70 -25.47 -0.15 -3.21 16 15 C -0.16 -2.71 5.70 -25.47 -0.15 -2.85 16 16 C 0.15 2.82 4.32 -65.76 -0.28 2.53 16 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.12 -2.00 5.27 -26.32 -0.14 -2.14 16 19 N -0.58 -13.40 2.78 -152.49 -0.42 -13.82 16 20 C -0.23 -5.99 10.34 -15.06 -0.16 -6.14 16 21 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 22 C 0.00 0.10 5.43 -17.43 -0.09 0.01 16 23 N -0.91 -24.40 10.33 55.49 0.57 -23.83 16 24 Si 0.91 20.94 29.56 -169.99 -5.02 15.92 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.12 1.47 6.91 -81.99 -0.57 0.90 16 29 C -0.12 -1.32 9.41 36.01 0.34 -0.99 16 30 N -0.24 -3.26 11.42 33.81 0.39 -2.88 16 31 N -0.23 -2.84 11.40 33.58 0.38 -2.45 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.15 0.91 6.65 -52.48 -0.35 0.56 16 36 H 0.39 3.77 5.57 -40.82 -0.23 3.54 16 37 H 0.20 3.03 1.11 -165.98 -0.19 2.85 16 38 H 0.06 0.82 7.99 -51.93 -0.42 0.41 16 39 H 0.09 2.00 7.40 -51.93 -0.38 1.61 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.43 4.85 -51.93 -0.25 1.18 16 43 H 0.09 1.37 3.97 -51.93 -0.21 1.17 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.04 0.49 6.75 -51.93 -0.35 0.14 16 47 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 48 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.12 1.46 5.19 -51.93 -0.27 1.19 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -29.62 373.24 -8.93 -38.55 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -7.19 Total: 7.76 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.06 Total: -8.44 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.65 Total: -51.63 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.07 Total: -7.80 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.62 -8.93 -38.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048528545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.419 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds