Wall clock time and date at job start Wed Apr 1 2020 03:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38552 * 120.02018 * 2 1 4 4 C 1.40066 * 117.81889 * 180.25766 * 3 2 1 5 5 C 1.48137 * 121.14445 * 179.73996 * 4 3 2 6 6 O 1.21520 * 120.00133 * 174.01194 * 5 4 3 7 7 N 1.34777 * 120.00075 * 354.01001 * 5 4 3 8 8 C 1.46500 * 119.99751 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46761 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.43485 * 59.46862 * 9 8 7 11 11 C 1.53151 * 109.43290 * 179.33039 * 9 8 7 12 12 C 1.54250 * 108.84446 * 66.08353 * 11 9 8 13 13 H 1.08999 * 112.33159 * 187.68906 * 12 11 9 14 14 C 1.54608 * 107.85718 * 312.47776 * 12 11 9 15 15 C 1.53796 * 104.85347 * 88.46916 * 14 12 11 16 16 C 1.54604 * 104.84685 * 359.97438 * 15 14 12 17 17 H 1.09005 * 112.69803 * 146.96387 * 16 15 14 18 18 C 1.53145 * 109.43328 * 299.55086 * 9 8 7 19 19 N 1.48297 * 104.26436 * 25.02650 * 16 15 14 20 20 C 1.36932 * 128.21657 * 138.35669 * 19 16 15 21 21 H 1.08010 * 119.99671 * 335.36007 * 20 19 16 22 22 C 1.38811 * 120.00305 * 155.34780 * 20 19 16 23 23 N 1.31614 * 120.00127 * 354.88899 * 22 20 19 24 24 Si 1.86805 * 119.99878 * 174.88697 * 22 20 19 25 25 H 1.48502 * 109.47051 * 180.02562 * 24 22 20 26 26 H 1.48498 * 109.47024 * 300.00347 * 24 22 20 27 27 H 1.48495 * 109.46989 * 60.00560 * 24 22 20 28 28 C 1.39768 * 117.70877 * 359.47284 * 4 3 2 29 29 C 1.50699 * 120.17353 * 180.29632 * 28 4 3 30 30 N 1.31894 * 119.65506 * 0.26654 * 28 4 3 31 31 N 1.28280 * 122.32794 * 0.02562 * 30 28 4 32 32 H 1.08996 * 109.47378 * 270.28340 * 1 2 3 33 33 H 1.09005 * 109.46665 * 30.28146 * 1 2 3 34 34 H 1.09001 * 109.46900 * 150.27743 * 1 2 3 35 35 H 1.08005 * 121.08858 * 0.02562 * 3 2 1 36 36 H 0.97002 * 119.99876 * 0.02562 * 7 5 4 37 37 H 1.09007 * 109.47054 * 60.00464 * 8 7 5 38 38 H 1.08996 * 109.47804 * 300.00327 * 8 7 5 39 39 H 1.09000 * 109.56995 * 185.99395 * 11 9 8 40 40 H 1.08998 * 109.56722 * 306.23727 * 11 9 8 41 41 H 1.09001 * 110.37963 * 207.17271 * 14 12 11 42 42 H 1.09002 * 110.38215 * 329.53489 * 14 12 11 43 43 H 1.08995 * 110.43090 * 241.09860 * 15 14 12 44 44 H 1.08994 * 110.23584 * 118.79558 * 15 14 12 45 45 H 1.09003 * 109.57019 * 174.00817 * 18 9 8 46 46 H 1.08998 * 109.67011 * 53.70726 * 18 9 8 47 47 H 0.96996 * 120.00252 * 179.97438 * 23 22 20 48 48 H 1.08996 * 109.47264 * 93.78241 * 29 28 4 49 49 H 1.09001 * 109.47238 * 213.78402 * 29 28 4 50 50 H 1.09000 * 109.46975 * 333.78192 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2002 1.1996 0.0000 4 6 3.5998 1.1459 -0.0056 5 6 4.4141 2.3833 -0.0117 6 8 5.6228 2.3159 0.0933 7 7 3.8143 3.5841 -0.1338 8 6 4.6196 4.8079 -0.1393 9 6 3.7008 6.0223 -0.2884 10 1 2.9941 6.0463 0.5411 11 6 4.5419 7.3020 -0.2772 12 6 5.4305 7.3252 -1.5379 13 1 6.1498 8.1440 -1.5226 14 6 6.1056 5.9404 -1.6676 15 6 5.1144 5.0935 -2.4835 16 6 3.9283 6.0417 -2.7736 17 1 3.4581 5.8446 -3.7370 18 6 2.9328 5.9210 -1.6095 19 7 4.5210 7.3994 -2.7066 20 6 4.2886 8.4669 -3.5322 21 1 3.9422 8.3031 -4.5420 22 6 4.4978 9.7594 -3.0712 23 7 4.8222 9.9646 -1.8123 24 14 4.3191 11.2074 -4.2377 25 1 4.5934 12.4698 -3.5053 26 1 5.2857 11.0644 -5.3560 27 1 2.9368 11.2391 -4.7792 28 6 4.2017 -0.1156 0.0006 29 6 5.7037 -0.2381 0.0018 30 7 3.4483 -1.1981 0.0060 31 7 2.1667 -1.1420 0.0053 32 1 -0.3634 0.0051 1.0276 33 1 -0.3633 0.8875 -0.5182 34 1 -0.3633 -0.8925 -0.5095 35 1 1.6784 2.1453 0.0004 36 1 2.8494 3.6380 -0.2173 37 1 5.3207 4.7778 -0.9734 38 1 5.1721 4.8836 0.7972 39 1 3.8842 8.1712 -0.2761 40 1 5.1701 7.3183 0.6134 41 1 7.0531 6.0284 -2.1993 42 1 6.2614 5.5003 -0.6827 43 1 4.7798 4.2343 -1.9023 44 1 5.5759 4.7663 -3.4151 45 1 2.2014 6.7270 -1.6693 46 1 2.4220 4.9597 -1.6642 47 1 4.9688 10.8677 -1.4902 48 1 6.0599 -0.3304 1.0278 49 1 5.9967 -1.1216 -0.5653 50 1 6.1410 0.6491 -0.4562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048528545.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:22 Heat of formation + Delta-G solvation = 123.174283 kcal Electronic energy + Delta-G solvation = -31534.150132 eV Core-core repulsion = 27565.674730 eV Total energy + Delta-G solvation = -3968.475402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.87160 -42.23976 -40.16461 -36.45527 -35.43218 -34.89067 -34.30483 -32.97677 -32.29727 -31.48872 -30.68571 -28.32781 -27.81559 -26.21101 -25.20310 -24.77275 -23.73387 -22.19510 -21.97756 -20.95243 -20.45234 -18.94581 -18.87955 -18.47195 -17.47543 -16.79771 -16.73123 -16.70975 -16.34512 -15.93101 -15.76528 -15.12950 -14.70433 -14.52506 -14.39410 -14.32821 -14.25011 -14.14724 -13.71508 -13.50458 -13.29628 -13.27546 -13.11670 -13.07349 -12.96982 -12.80116 -12.65348 -12.50386 -12.27608 -12.05852 -11.98779 -11.48923 -11.36354 -11.33539 -11.25529 -10.98003 -10.88528 -10.80642 -10.56678 -10.47280 -10.41281 -9.52162 -8.58697 -7.83963 -5.21785 -0.76938 -0.22236 1.47929 1.48992 1.54847 1.66061 1.95323 2.47544 2.51736 2.88812 3.19453 3.31633 3.34946 3.58943 3.63077 3.70197 3.97267 3.97794 4.06851 4.11014 4.24732 4.27238 4.31076 4.40225 4.47827 4.57758 4.62774 4.71241 4.74727 4.78576 4.80550 4.81448 4.85922 4.92634 5.00093 5.05705 5.12158 5.12781 5.18696 5.24354 5.30889 5.38202 5.43604 5.52172 5.55407 5.58263 5.65265 5.79906 5.96689 6.33454 6.42922 7.08042 7.13714 7.57833 7.78697 8.63991 9.28120 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.002710 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.684793 B =10328.423145 C =10916.875108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.058 3.942 3 C -0.067 4.067 4 C -0.138 4.138 5 C 0.559 3.441 6 O -0.545 6.545 7 N -0.697 5.697 8 C 0.014 3.986 9 C -0.075 4.075 10 H 0.073 0.927 11 C -0.102 4.102 12 C 0.179 3.821 13 H 0.051 0.949 14 C -0.163 4.163 15 C -0.149 4.149 16 C 0.140 3.860 17 H 0.063 0.937 18 C -0.115 4.115 19 N -0.605 5.605 20 C -0.240 4.240 21 H 0.066 0.934 22 C -0.047 4.047 23 N -0.927 5.927 24 Si 0.964 3.036 25 H -0.296 1.296 26 H -0.284 1.284 27 H -0.279 1.279 28 C 0.105 3.895 29 C -0.116 4.116 30 N -0.271 5.271 31 N -0.256 5.256 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.192 0.808 36 H 0.408 0.592 37 H 0.187 0.813 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.109 0.891 43 H 0.117 0.883 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.083 0.917 47 H 0.246 0.754 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.461 -17.325 5.652 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.088 4.088 3 C -0.096 4.096 4 C -0.152 4.152 5 C 0.345 3.655 6 O -0.424 6.424 7 N -0.348 5.348 8 C -0.106 4.106 9 C -0.094 4.094 10 H 0.091 0.909 11 C -0.141 4.141 12 C 0.072 3.928 13 H 0.069 0.931 14 C -0.202 4.202 15 C -0.187 4.187 16 C 0.034 3.966 17 H 0.081 0.919 18 C -0.154 4.154 19 N -0.327 5.327 20 C -0.369 4.369 21 H 0.084 0.916 22 C -0.243 4.243 23 N -0.573 5.573 24 Si 0.794 3.206 25 H -0.223 1.223 26 H -0.210 1.210 27 H -0.205 1.205 28 C -0.041 4.041 29 C -0.173 4.173 30 N -0.112 5.112 31 N -0.098 5.098 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.209 0.791 36 H 0.246 0.754 37 H 0.202 0.798 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.101 0.899 47 H 0.055 0.945 48 H 0.106 0.894 49 H 0.100 0.900 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.679 -18.728 5.711 20.687 hybrid contribution -0.318 2.915 -0.399 2.960 sum -6.997 -15.812 5.312 18.089 Atomic orbital electron populations 1.20874 0.84154 1.05673 1.05101 1.23463 1.01028 0.89282 0.95003 1.22975 0.92372 1.01901 0.92365 1.21101 0.95324 0.94905 1.03838 1.17943 0.87088 0.83198 0.77261 1.90689 1.14708 1.86438 1.50588 1.46068 1.11694 1.05156 1.71931 1.24973 0.96778 0.81724 1.07083 1.21141 0.96923 0.93567 0.97782 0.90852 1.21925 0.98518 0.96231 0.97471 1.21341 0.91180 0.93119 0.87124 0.93075 1.23374 0.98253 0.97584 1.00947 1.23244 0.96791 0.98980 0.99707 1.21769 0.92930 0.85482 0.96438 0.91883 1.22057 0.97576 1.00687 0.95093 1.45246 1.46686 1.08156 1.32625 1.19115 1.40124 0.84827 0.92881 0.91628 1.25655 1.02092 0.99419 0.97102 1.70040 1.53043 1.19858 1.14337 0.85389 0.77958 0.79098 0.78190 1.22259 1.21019 1.20472 1.23310 1.00146 0.88908 0.91687 1.21162 0.86182 1.05577 1.04412 1.73000 0.99584 1.27187 1.11474 1.72728 1.01752 1.26811 1.08511 0.88251 0.87305 0.89842 0.79087 0.75396 0.79818 0.92674 0.93598 0.93423 0.93219 0.87320 0.86606 0.92872 0.94129 0.89906 0.94477 0.89388 0.89980 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.19 71.24 0.73 -0.04 16 2 C 0.06 0.92 6.86 42.63 0.29 1.21 16 3 C -0.07 -0.93 9.35 22.79 0.21 -0.71 16 4 C -0.14 -2.76 5.92 -19.83 -0.12 -2.88 16 5 C 0.56 12.47 7.51 86.87 0.65 13.12 16 6 O -0.54 -15.27 13.34 -3.78 -0.05 -15.32 16 7 N -0.70 -13.39 4.36 -465.68 -2.03 -15.42 16 8 C 0.01 0.34 2.67 86.38 0.23 0.57 16 9 C -0.08 -2.16 2.76 -10.69 -0.03 -2.19 16 10 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 11 C -0.10 -3.93 5.21 31.07 0.16 -3.77 16 12 C 0.18 7.78 3.13 45.62 0.14 7.92 16 13 H 0.05 2.66 6.89 -2.39 -0.02 2.65 16 14 C -0.16 -5.65 5.70 31.41 0.18 -5.47 16 15 C -0.15 -4.65 5.70 31.41 0.18 -4.47 16 16 C 0.14 5.06 4.32 45.41 0.20 5.25 16 17 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 18 C -0.11 -3.41 5.27 30.86 0.16 -3.25 16 19 N -0.61 -28.21 2.78 -636.35 -1.77 -29.98 16 20 C -0.24 -12.72 10.34 84.03 0.87 -11.85 16 21 H 0.07 3.42 7.83 -2.91 -0.02 3.40 16 22 C -0.05 -2.54 5.43 84.86 0.46 -2.07 16 23 N -0.93 -51.93 10.33 21.65 0.22 -51.71 16 24 Si 0.96 44.06 29.56 68.60 2.03 46.09 16 25 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.10 2.46 6.91 42.92 0.30 2.76 16 29 C -0.12 -2.47 9.41 71.24 0.67 -1.80 16 30 N -0.27 -7.00 11.42 -46.94 -0.54 -7.54 16 31 N -0.26 -5.97 11.40 -47.68 -0.54 -6.51 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.11 0.29 8.09 -2.38 -0.02 0.27 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.19 1.06 6.65 -2.91 -0.02 1.04 16 36 H 0.41 5.43 5.57 -92.71 -0.52 4.91 16 37 H 0.19 5.14 1.11 -109.52 -0.12 5.02 16 38 H 0.06 1.46 7.99 -2.39 -0.02 1.44 16 39 H 0.05 2.16 7.40 -2.39 -0.02 2.14 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.11 3.33 4.85 -2.39 -0.01 3.32 16 43 H 0.12 3.06 3.97 -2.39 -0.01 3.05 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.73 6.75 -2.39 -0.02 1.71 16 47 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.11 2.57 5.19 -2.39 -0.01 2.56 16 Total: -1.00 -68.33 373.24 2.96 -65.37 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.35 Total: 22.72 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.29 Total: -7.69 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.66 Total: -111.17 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.05 Total: -15.32 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.33 2.96 -65.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048528545.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.542 kcal (2) G-P(sol) polarization free energy of solvation -68.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds