Wall clock time and date at job start Wed Apr 1 2020 02:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48505 * 109.46745 * 264.99946 * 3 2 1 5 5 H 1.48495 * 109.47051 * 24.99775 * 3 2 1 6 6 H 1.48497 * 109.47329 * 145.00155 * 3 2 1 7 7 C 1.38818 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99858 * 213.60826 * 7 2 1 9 9 N 1.36933 * 120.00162 * 33.61124 * 7 2 1 10 10 C 1.48286 * 128.21260 * 185.27901 * 9 7 2 11 11 H 1.09008 * 112.20886 * 343.86934 * 10 9 7 12 12 C 1.54610 * 104.26372 * 221.61748 * 10 9 7 13 13 C 1.54319 * 104.75004 * 334.86185 * 12 10 9 14 14 C 1.48296 * 128.20847 * 5.27855 * 9 7 2 15 15 H 1.08996 * 112.21365 * 16.72899 * 14 9 7 16 16 C 1.53704 * 107.27133 * 252.57795 * 14 9 7 17 17 C 1.53144 * 108.88385 * 295.99684 * 16 14 9 18 18 H 1.08995 * 109.39829 * 173.93698 * 17 16 14 19 19 C 1.53000 * 109.43450 * 293.82575 * 17 16 14 20 20 N 1.46498 * 109.47301 * 179.91725 * 19 17 16 21 21 C 1.34779 * 120.00035 * 180.02562 * 20 19 17 22 22 O 1.21574 * 119.99987 * 359.97438 * 21 20 19 23 23 C 1.47712 * 119.99840 * 179.97438 * 21 20 19 24 24 C 1.41500 * 126.51618 * 180.02562 * 23 21 20 25 25 C 1.35369 * 105.50184 * 179.97438 * 24 23 21 26 26 C 1.50697 * 126.38099 * 180.02562 * 25 24 23 27 27 C 1.53000 * 117.49593 * 213.61964 * 26 25 24 28 28 C 1.52997 * 60.00115 * 252.51508 * 27 26 25 29 29 N 1.35031 * 107.22527 * 0.02562 * 25 24 23 30 30 H 0.97010 * 124.87861 * 180.02562 * 29 25 24 31 31 N 1.28464 * 110.23465 * 359.74212 * 29 25 24 32 32 C 1.53141 * 109.68843 * 53.89008 * 17 16 14 33 33 H 0.97001 * 119.99961 * 359.97438 * 1 2 3 34 34 H 1.08998 * 110.38309 * 93.67893 * 12 10 9 35 35 H 1.09000 * 110.38115 * 216.04756 * 12 10 9 36 36 H 1.09003 * 110.38090 * 241.18084 * 13 12 10 37 37 H 1.09000 * 110.37974 * 118.81168 * 13 12 10 38 38 H 1.09003 * 109.56874 * 176.17530 * 16 14 9 39 39 H 1.08998 * 109.57015 * 55.81894 * 16 14 9 40 40 H 1.09001 * 109.47088 * 59.90835 * 19 17 16 41 41 H 1.09005 * 109.47072 * 299.91633 * 19 17 16 42 42 H 0.96994 * 119.99721 * 359.97438 * 20 19 17 43 43 H 1.08003 * 127.25107 * 359.95884 * 24 23 21 44 44 H 1.08996 * 115.55570 * 359.33416 * 26 25 24 45 45 H 1.09004 * 117.50027 * 0.02562 * 27 26 25 46 46 H 1.09000 * 117.50126 * 145.02063 * 27 26 25 47 47 H 1.09002 * 117.49911 * 252.50938 * 28 27 26 48 48 H 1.09007 * 117.49785 * 107.49435 * 28 27 26 49 49 H 1.08999 * 109.56867 * 65.92453 * 32 17 16 50 50 H 1.09002 * 109.57104 * 186.29382 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9853 -1.3948 5 1 1.3988 2.6808 0.5916 6 1 3.4909 1.4730 0.8030 7 6 2.0103 -1.2022 0.0005 8 1 2.9548 -1.2802 0.5183 9 7 1.4973 -2.2893 -0.6554 10 6 2.0230 -3.6755 -0.6841 11 1 3.0562 -3.7315 -0.3412 12 6 1.8590 -4.1147 -2.1574 13 6 0.7076 -3.2430 -2.7014 14 6 0.2842 -2.3593 -1.5055 15 1 -0.0545 -1.3729 -1.8222 16 6 -0.7864 -3.1241 -0.7109 17 6 -0.3027 -4.5589 -0.4816 18 1 -1.0044 -5.0774 0.1717 19 6 -0.2217 -5.2894 -1.8235 20 7 0.2428 -6.6616 -1.6054 21 6 0.3917 -7.4971 -2.6524 22 8 0.1401 -7.1123 -3.7778 23 6 0.8605 -8.8805 -2.4324 24 6 1.0650 -9.8681 -3.4249 25 6 1.4934 -10.9664 -2.7596 26 6 1.8523 -12.2972 -3.3688 27 6 1.5553 -13.5533 -2.5472 28 6 2.9993 -13.0811 -2.7280 29 7 1.5394 -10.6470 -1.4484 30 1 1.8139 -11.2501 -0.7398 31 7 1.1728 -9.4281 -1.2749 32 6 1.0821 -4.5384 0.1718 33 1 -0.4850 0.8401 0.0004 34 1 2.7760 -3.9234 -2.7149 35 1 1.5940 -5.1706 -2.2116 36 1 -0.1238 -3.8701 -3.0232 37 1 1.0581 -2.6229 -3.5264 38 1 -1.7188 -3.1389 -1.2753 39 1 -0.9469 -2.6350 0.2498 40 1 0.4769 -4.7691 -2.4788 41 1 -1.2083 -5.3091 -2.2867 42 1 0.4439 -6.9685 -0.7075 43 1 0.9112 -9.7671 -4.4891 44 1 1.7393 -12.3647 -4.4508 45 1 1.1000 -13.4171 -1.5663 46 1 1.2466 -14.4475 -3.0887 47 1 3.6407 -13.6647 -3.3884 48 1 3.4944 -12.6343 -1.8658 49 1 1.0072 -4.1139 1.1729 50 1 1.4724 -5.5544 0.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048567698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:41 Heat of formation + Delta-G solvation = 185.098197 kcal Electronic energy + Delta-G solvation = -30864.435406 eV Core-core repulsion = 26898.645227 eV Total energy + Delta-G solvation = -3965.790179 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.96385 -41.20119 -38.70637 -37.65194 -34.68646 -32.82527 -32.02104 -31.43177 -30.87446 -30.59166 -29.64593 -26.77746 -24.46012 -23.78971 -23.28155 -23.00446 -22.75072 -21.35428 -20.61729 -20.05109 -19.33831 -18.69276 -18.04542 -17.04643 -16.82455 -16.25046 -15.96345 -15.74490 -15.21142 -14.61158 -14.52052 -14.23925 -13.96321 -13.67077 -13.40554 -13.00542 -12.70364 -12.65137 -12.62040 -12.22132 -11.95473 -11.73072 -11.59634 -11.55986 -11.38203 -11.22876 -11.16916 -10.96779 -10.90606 -10.79094 -10.49005 -10.12670 -10.06116 -9.69770 -9.58796 -9.45792 -9.37894 -9.35606 -9.20554 -9.06772 -8.40197 -8.09848 -6.91235 -5.85417 -2.95058 1.41804 1.81494 2.53964 3.34163 3.37713 3.44243 3.52031 3.52639 3.53978 3.94183 4.17274 4.32749 4.34531 4.53757 4.60654 5.00057 5.09676 5.24045 5.24605 5.27379 5.38092 5.40741 5.43821 5.47765 5.50912 5.62097 5.68106 5.80178 5.84207 5.93181 6.10181 6.11637 6.16132 6.21728 6.32220 6.44488 6.45756 6.60157 6.65870 6.66226 6.71346 6.78628 6.90731 6.98089 7.07630 7.12610 7.47805 7.51060 7.56752 7.79644 7.84170 8.16835 8.40607 9.10677 9.80207 10.59246 11.29421 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.002241 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.938527 B =12492.055434 C =12703.262226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.004 3.996 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.583 5.583 10 C 0.153 3.847 11 H 0.066 0.934 12 C -0.162 4.162 13 C -0.170 4.170 14 C 0.179 3.821 15 H 0.096 0.904 16 C -0.113 4.113 17 C -0.084 4.084 18 H 0.052 0.948 19 C 0.002 3.998 20 N -0.706 5.706 21 C 0.594 3.406 22 O -0.536 6.536 23 C -0.003 4.003 24 C -0.170 4.170 25 C 0.043 3.957 26 C -0.086 4.086 27 C -0.175 4.175 28 C -0.174 4.174 29 N -0.382 5.382 30 H 0.441 0.559 31 N -0.256 5.256 32 C -0.126 4.126 33 H 0.253 0.747 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.196 0.804 41 H 0.052 0.948 42 H 0.400 0.600 43 H 0.163 0.837 44 H 0.134 0.866 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.063 0.937 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.170 -26.459 -4.558 26.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.195 4.195 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.304 5.304 10 C 0.045 3.955 11 H 0.084 0.916 12 C -0.200 4.200 13 C -0.208 4.208 14 C 0.072 3.928 15 H 0.114 0.886 16 C -0.153 4.153 17 C -0.103 4.103 18 H 0.070 0.930 19 C -0.117 4.117 20 N -0.356 5.356 21 C 0.378 3.622 22 O -0.412 6.412 23 C -0.165 4.165 24 C -0.198 4.198 25 C -0.083 4.083 26 C -0.105 4.105 27 C -0.212 4.212 28 C -0.211 4.211 29 N -0.096 5.096 30 H 0.285 0.715 31 N -0.092 5.092 32 C -0.166 4.166 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.211 0.789 41 H 0.070 0.930 42 H 0.235 0.765 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.112 0.888 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.082 0.918 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.954 -25.586 -4.139 25.992 hybrid contribution 0.417 0.077 0.286 0.511 sum 2.371 -25.509 -3.854 25.907 Atomic orbital electron populations 1.70202 1.05268 1.25665 1.51846 1.24575 0.94968 0.97718 1.02221 0.86566 0.79773 0.84627 0.77824 1.21671 1.22166 1.20758 1.18857 1.01860 0.86605 1.28872 0.90392 1.45315 1.27006 1.03553 1.54479 1.21476 0.95617 0.86220 0.92203 0.91597 1.23398 0.98052 1.00121 0.98447 1.23476 0.98198 0.98930 1.00243 1.21375 0.86965 0.96839 0.87626 0.88639 1.22033 0.97704 0.92776 1.02746 1.21242 0.97285 0.97291 0.94505 0.92951 1.25303 1.03599 0.80577 1.02203 1.46239 1.66216 1.13610 1.09583 1.16861 0.77998 0.82313 0.85042 1.90789 1.51404 1.76067 1.22896 1.22102 1.07605 0.96766 0.89981 1.21457 1.06502 0.90878 1.00924 1.20432 1.06444 0.96801 0.84596 1.20525 1.04162 0.86421 0.99421 1.23097 0.98731 0.97755 1.01623 1.23105 0.91462 1.03153 1.03404 1.43195 1.49397 1.09508 1.07544 0.71467 1.73594 1.16302 0.93779 1.25487 1.22217 0.95766 0.98288 1.00290 0.93712 0.92851 0.88747 0.89142 0.92506 0.93881 0.90142 0.78933 0.92962 0.76494 0.81891 0.84850 0.88810 0.87532 0.87505 0.88744 0.91823 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.07 11.67 55.49 0.65 -24.42 16 2 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 3 Si 0.88 21.63 29.66 -169.99 -5.04 16.59 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.23 -6.37 10.22 -15.06 -0.15 -6.52 16 8 H 0.08 2.10 8.01 -52.49 -0.42 1.68 16 9 N -0.58 -14.12 2.83 -152.76 -0.43 -14.55 16 10 C 0.15 3.09 4.32 -65.74 -0.28 2.81 16 11 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 12 C -0.16 -2.97 5.72 -25.19 -0.14 -3.11 16 13 C -0.17 -3.26 5.72 -25.19 -0.14 -3.41 16 14 C 0.18 4.04 3.29 -65.73 -0.22 3.82 16 15 H 0.10 2.46 6.64 -51.93 -0.34 2.11 16 16 C -0.11 -2.32 5.37 -26.29 -0.14 -2.46 16 17 C -0.08 -1.47 2.77 -90.47 -0.25 -1.72 16 18 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 19 C 0.00 0.03 2.69 -4.04 -0.01 0.02 16 20 N -0.71 -10.52 4.36 -61.29 -0.27 -10.79 16 21 C 0.59 9.38 7.57 -12.39 -0.09 9.29 16 22 O -0.54 -9.92 16.93 5.30 0.09 -9.83 16 23 C 0.00 -0.04 7.13 -82.77 -0.59 -0.63 16 24 C -0.17 -1.93 10.73 -39.36 -0.42 -2.35 16 25 C 0.04 0.37 6.64 -82.21 -0.55 -0.18 16 26 C -0.09 -0.47 6.26 -91.77 -0.57 -1.04 16 27 C -0.17 -0.67 10.22 -26.73 -0.27 -0.95 16 28 C -0.17 -0.69 10.23 -26.73 -0.27 -0.96 16 29 N -0.38 -3.24 6.80 33.50 0.23 -3.01 16 30 H 0.44 2.25 8.96 -190.43 -1.71 0.54 16 31 N -0.26 -3.01 11.92 33.42 0.40 -2.61 16 32 C -0.13 -2.27 5.27 -26.29 -0.14 -2.41 16 33 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.62 3.92 -51.93 -0.20 1.42 16 36 H 0.09 1.61 4.85 -51.93 -0.25 1.36 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.92 8.14 -51.93 -0.42 1.50 16 40 H 0.20 3.37 1.12 -165.90 -0.19 3.19 16 41 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 42 H 0.40 5.47 7.02 -40.82 -0.29 5.19 16 43 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 44 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.11 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.04 0.67 6.69 -51.93 -0.35 0.33 16 LS Contribution 384.03 15.07 5.79 5.79 Total: -1.00 -31.70 384.03 -11.73 -43.43 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.79 Total: 9.21 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -4.35 Total: -9.81 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.57 Total: -55.38 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.04 Total: 16.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.70 -11.73 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048567698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.532 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 196.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 185.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds