Wall clock time and date at job start Wed Apr 1 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48505 * 109.46745 * 264.99946 * 3 2 1 5 5 H 1.48495 * 109.47051 * 24.99775 * 3 2 1 6 6 H 1.48497 * 109.47329 * 145.00155 * 3 2 1 7 7 C 1.38818 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99858 * 213.60826 * 7 2 1 9 9 N 1.36933 * 120.00162 * 33.61124 * 7 2 1 10 10 C 1.48286 * 128.21260 * 185.27901 * 9 7 2 11 11 H 1.09008 * 112.20886 * 343.86934 * 10 9 7 12 12 C 1.54610 * 104.26372 * 221.61748 * 10 9 7 13 13 C 1.54319 * 104.75004 * 334.86185 * 12 10 9 14 14 C 1.48296 * 128.20847 * 5.27855 * 9 7 2 15 15 H 1.08996 * 112.21365 * 16.72899 * 14 9 7 16 16 C 1.53704 * 107.27133 * 252.57795 * 14 9 7 17 17 C 1.53144 * 108.88385 * 295.99684 * 16 14 9 18 18 H 1.08995 * 109.39829 * 173.93698 * 17 16 14 19 19 C 1.53000 * 109.43450 * 293.82575 * 17 16 14 20 20 N 1.46498 * 109.47301 * 179.91725 * 19 17 16 21 21 C 1.34779 * 120.00035 * 180.02562 * 20 19 17 22 22 O 1.21574 * 119.99987 * 359.97438 * 21 20 19 23 23 C 1.47712 * 119.99840 * 179.97438 * 21 20 19 24 24 C 1.41500 * 126.51618 * 180.02562 * 23 21 20 25 25 C 1.35369 * 105.50184 * 179.97438 * 24 23 21 26 26 C 1.50697 * 126.38099 * 180.02562 * 25 24 23 27 27 C 1.53000 * 117.49593 * 213.61964 * 26 25 24 28 28 C 1.52997 * 60.00115 * 252.51508 * 27 26 25 29 29 N 1.35031 * 107.22527 * 0.02562 * 25 24 23 30 30 H 0.97010 * 124.87861 * 180.02562 * 29 25 24 31 31 N 1.28464 * 110.23465 * 359.74212 * 29 25 24 32 32 C 1.53141 * 109.68843 * 53.89008 * 17 16 14 33 33 H 0.97001 * 119.99961 * 359.97438 * 1 2 3 34 34 H 1.08998 * 110.38309 * 93.67893 * 12 10 9 35 35 H 1.09000 * 110.38115 * 216.04756 * 12 10 9 36 36 H 1.09003 * 110.38090 * 241.18084 * 13 12 10 37 37 H 1.09000 * 110.37974 * 118.81168 * 13 12 10 38 38 H 1.09003 * 109.56874 * 176.17530 * 16 14 9 39 39 H 1.08998 * 109.57015 * 55.81894 * 16 14 9 40 40 H 1.09001 * 109.47088 * 59.90835 * 19 17 16 41 41 H 1.09005 * 109.47072 * 299.91633 * 19 17 16 42 42 H 0.96994 * 119.99721 * 359.97438 * 20 19 17 43 43 H 1.08003 * 127.25107 * 359.95884 * 24 23 21 44 44 H 1.08996 * 115.55570 * 359.33416 * 26 25 24 45 45 H 1.09004 * 117.50027 * 0.02562 * 27 26 25 46 46 H 1.09000 * 117.50126 * 145.02063 * 27 26 25 47 47 H 1.09002 * 117.49911 * 252.50938 * 28 27 26 48 48 H 1.09007 * 117.49785 * 107.49435 * 28 27 26 49 49 H 1.08999 * 109.56867 * 65.92453 * 32 17 16 50 50 H 1.09002 * 109.57104 * 186.29382 * 32 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9853 -1.3948 5 1 1.3988 2.6808 0.5916 6 1 3.4909 1.4730 0.8030 7 6 2.0103 -1.2022 0.0005 8 1 2.9548 -1.2802 0.5183 9 7 1.4973 -2.2893 -0.6554 10 6 2.0230 -3.6755 -0.6841 11 1 3.0562 -3.7315 -0.3412 12 6 1.8590 -4.1147 -2.1574 13 6 0.7076 -3.2430 -2.7014 14 6 0.2842 -2.3593 -1.5055 15 1 -0.0545 -1.3729 -1.8222 16 6 -0.7864 -3.1241 -0.7109 17 6 -0.3027 -4.5589 -0.4816 18 1 -1.0044 -5.0774 0.1717 19 6 -0.2217 -5.2894 -1.8235 20 7 0.2428 -6.6616 -1.6054 21 6 0.3917 -7.4971 -2.6524 22 8 0.1401 -7.1123 -3.7778 23 6 0.8605 -8.8805 -2.4324 24 6 1.0650 -9.8681 -3.4249 25 6 1.4934 -10.9664 -2.7596 26 6 1.8523 -12.2972 -3.3688 27 6 1.5553 -13.5533 -2.5472 28 6 2.9993 -13.0811 -2.7280 29 7 1.5394 -10.6470 -1.4484 30 1 1.8139 -11.2501 -0.7398 31 7 1.1728 -9.4281 -1.2749 32 6 1.0821 -4.5384 0.1718 33 1 -0.4850 0.8401 0.0004 34 1 2.7760 -3.9234 -2.7149 35 1 1.5940 -5.1706 -2.2116 36 1 -0.1238 -3.8701 -3.0232 37 1 1.0581 -2.6229 -3.5264 38 1 -1.7188 -3.1389 -1.2753 39 1 -0.9469 -2.6350 0.2498 40 1 0.4769 -4.7691 -2.4788 41 1 -1.2083 -5.3091 -2.2867 42 1 0.4439 -6.9685 -0.7075 43 1 0.9112 -9.7671 -4.4891 44 1 1.7393 -12.3647 -4.4508 45 1 1.1000 -13.4171 -1.5663 46 1 1.2466 -14.4475 -3.0887 47 1 3.6407 -13.6647 -3.3884 48 1 3.4944 -12.6343 -1.8658 49 1 1.0072 -4.1139 1.1729 50 1 1.4724 -5.5544 0.2322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048567698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:39 Heat of formation + Delta-G solvation = 165.909969 kcal Electronic energy + Delta-G solvation = -30865.267470 eV Core-core repulsion = 26898.645227 eV Total energy + Delta-G solvation = -3966.622243 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.76094 -42.72447 -39.98843 -38.05491 -36.21997 -34.55600 -33.12672 -32.80274 -32.34217 -31.70229 -31.24198 -28.39146 -25.86887 -24.91569 -24.71534 -23.89571 -23.26109 -22.13502 -22.09382 -21.41955 -20.82481 -20.31858 -18.79615 -18.55801 -18.03603 -17.46040 -16.91217 -16.77740 -16.39222 -16.22150 -15.91975 -15.33446 -15.05254 -14.85076 -14.60873 -14.44712 -14.32077 -14.21636 -13.70343 -13.48360 -13.19217 -13.12745 -13.07136 -12.81425 -12.72090 -12.55363 -12.45384 -12.32085 -12.03817 -12.02108 -11.96642 -11.50541 -11.37954 -11.22574 -11.10186 -11.02813 -10.89793 -10.82443 -10.45445 -10.36357 -9.75171 -9.47685 -8.86793 -7.93779 -5.02694 0.51057 1.02045 1.45825 1.51228 1.56421 1.83711 2.28316 2.38986 2.53190 3.01801 3.20693 3.38104 3.46388 3.58271 3.79617 3.93237 3.94174 3.99563 4.05061 4.13703 4.24694 4.25795 4.31354 4.37794 4.52709 4.59586 4.61015 4.71567 4.76604 4.77200 4.81593 4.89191 4.98526 5.01734 5.03069 5.09136 5.16064 5.19011 5.20522 5.28494 5.31092 5.36665 5.47779 5.52783 5.55859 5.58252 5.74987 5.84055 6.04094 6.19346 6.51606 6.86398 7.06194 7.22146 7.78616 8.60278 9.20326 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.028861 B = 0.002241 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.938527 B =12492.055434 C =12703.262226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.046 4.046 3 Si 0.942 3.058 4 H -0.293 1.293 5 H -0.299 1.299 6 H -0.273 1.273 7 C -0.241 4.241 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.149 4.149 13 C -0.161 4.161 14 C 0.173 3.827 15 H 0.056 0.944 16 C -0.105 4.105 17 C -0.073 4.073 18 H 0.069 0.931 19 C 0.013 3.987 20 N -0.699 5.699 21 C 0.595 3.405 22 O -0.569 6.569 23 C -0.030 4.030 24 C -0.195 4.195 25 C 0.064 3.936 26 C -0.104 4.104 27 C -0.165 4.165 28 C -0.166 4.166 29 N -0.365 5.365 30 H 0.457 0.543 31 N -0.264 5.264 32 C -0.117 4.117 33 H 0.248 0.752 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.186 0.814 41 H 0.052 0.948 42 H 0.408 0.592 43 H 0.164 0.836 44 H 0.142 0.858 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.097 0.903 49 H 0.041 0.959 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.228 -29.933 -4.712 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.243 4.243 3 Si 0.772 3.228 4 H -0.221 1.221 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.325 5.325 10 C 0.037 3.963 11 H 0.085 0.915 12 C -0.187 4.187 13 C -0.199 4.199 14 C 0.066 3.934 15 H 0.074 0.926 16 C -0.145 4.145 17 C -0.092 4.092 18 H 0.087 0.913 19 C -0.107 4.107 20 N -0.350 5.350 21 C 0.380 3.620 22 O -0.447 6.447 23 C -0.189 4.189 24 C -0.223 4.223 25 C -0.062 4.062 26 C -0.124 4.124 27 C -0.202 4.202 28 C -0.203 4.203 29 N -0.082 5.082 30 H 0.305 0.695 31 N -0.101 5.101 32 C -0.156 4.156 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.202 0.798 41 H 0.070 0.930 42 H 0.245 0.755 43 H 0.182 0.818 44 H 0.160 0.840 45 H 0.116 0.884 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.116 0.884 49 H 0.060 0.940 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.039 -29.100 -4.264 29.567 hybrid contribution 0.122 1.020 0.363 1.089 sum 3.161 -28.080 -3.901 28.525 Atomic orbital electron populations 1.70311 1.06262 1.25618 1.53667 1.25196 0.95661 1.00157 1.03246 0.85617 0.78690 0.81159 0.77338 1.22098 1.22661 1.19850 1.19103 1.01562 0.87940 1.28330 0.90738 1.45500 1.27802 1.04741 1.54463 1.21721 0.96021 0.84651 0.93868 0.91534 1.23320 0.97830 1.00755 0.96843 1.23431 0.99194 0.98695 0.98618 1.21334 0.87158 0.95898 0.88993 0.92611 1.21850 0.97896 0.94283 1.00480 1.21100 0.97216 0.95400 0.95504 0.91267 1.24948 1.03443 0.81332 1.00934 1.46068 1.66062 1.12827 1.10009 1.17140 0.77211 0.83148 0.84468 1.90765 1.52868 1.76942 1.24085 1.21824 1.09713 0.96120 0.91290 1.21614 1.08058 0.91516 1.01106 1.20754 1.03995 0.97285 0.84151 1.20661 1.06271 0.85428 1.00062 1.23207 0.98588 0.96956 1.01467 1.23210 0.91536 1.02266 1.03311 1.43261 1.47895 1.08799 1.08249 0.69535 1.73512 1.16693 0.95007 1.24903 1.22093 0.95628 0.99382 0.98539 0.94338 0.92459 0.87020 0.87303 0.92759 0.92657 0.94009 0.79828 0.92959 0.75526 0.81841 0.83985 0.88385 0.86271 0.86310 0.88444 0.94008 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.67 11.67 21.65 0.25 -53.42 16 2 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 3 Si 0.94 45.71 29.66 68.60 2.03 47.75 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 5 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.24 -13.36 10.22 84.04 0.86 -12.50 16 8 H 0.07 4.07 8.01 -2.91 -0.02 4.05 16 9 N -0.60 -29.76 2.83 -637.21 -1.80 -31.56 16 10 C 0.14 5.73 4.32 45.43 0.20 5.93 16 11 H 0.07 2.62 8.14 -2.38 -0.02 2.60 16 12 C -0.15 -5.28 5.72 31.59 0.18 -5.10 16 13 C -0.16 -6.13 5.72 31.59 0.18 -5.94 16 14 C 0.17 7.98 3.29 45.43 0.15 8.13 16 15 H 0.06 3.01 6.64 -2.39 -0.02 2.99 16 16 C -0.11 -4.39 5.37 30.88 0.17 -4.23 16 17 C -0.07 -2.48 2.77 -10.70 -0.03 -2.51 16 18 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.01 0.40 2.69 86.38 0.23 0.63 16 20 N -0.70 -19.43 4.36 -466.09 -2.03 -21.46 16 21 C 0.60 18.01 7.57 86.75 0.66 18.66 16 22 O -0.57 -20.60 16.93 -3.95 -0.07 -20.67 16 23 C -0.03 -0.76 7.13 42.46 0.30 -0.45 16 24 C -0.19 -4.18 10.73 22.41 0.24 -3.94 16 25 C 0.06 0.96 6.64 41.40 0.28 1.23 16 26 C -0.10 -0.84 6.26 -11.54 -0.07 -0.92 16 27 C -0.16 -0.70 10.22 30.59 0.31 -0.39 16 28 C -0.17 -0.74 10.23 30.59 0.31 -0.43 16 29 N -0.37 -5.22 6.80 -47.93 -0.33 -5.55 16 30 H 0.46 3.21 8.96 -219.98 -1.97 1.24 16 31 N -0.26 -5.64 11.92 -48.18 -0.57 -6.22 16 32 C -0.12 -4.08 5.27 30.88 0.16 -3.92 16 33 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 3.61 3.92 -2.39 -0.01 3.60 16 36 H 0.11 3.76 4.85 -2.39 -0.01 3.75 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.19 6.13 1.12 -109.44 -0.12 6.01 16 41 H 0.05 1.67 8.01 -2.38 -0.02 1.66 16 42 H 0.41 10.12 7.02 -92.71 -0.65 9.46 16 43 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 50 H 0.08 2.17 6.69 -2.39 -0.02 2.15 16 Total: -1.00 -70.59 384.03 0.30 -70.29 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -1.75 Total: 28.76 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 4.56 Total: -7.93 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -4.48 Total: -118.20 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.07 Total: -20.67 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.59 0.30 -70.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048567698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.204 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds