Wall clock time and date at job start Wed Apr 1 2020 02:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86805 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47138 * 274.99793 * 3 2 1 5 5 H 1.48498 * 109.46991 * 35.00037 * 3 2 1 6 6 H 1.48499 * 109.47029 * 154.99775 * 3 2 1 7 7 C 1.38817 * 120.00108 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99961 * 185.40048 * 7 2 1 9 9 N 1.36936 * 119.99522 * 5.39949 * 7 2 1 10 10 C 1.46636 * 125.33195 * 5.15784 * 9 7 2 11 11 C 1.53694 * 108.00816 * 180.81543 * 10 9 7 12 12 H 1.08999 * 113.05506 * 253.80270 * 11 10 9 13 13 C 1.53729 * 109.33910 * 127.55672 * 11 10 9 14 14 N 1.46672 * 107.94252 * 266.25181 * 13 11 10 15 15 C 1.34780 * 125.33669 * 180.54770 * 14 13 11 16 16 O 1.21626 * 119.99584 * 357.44411 * 15 14 13 17 17 C 1.47163 * 119.99503 * 177.44717 * 15 14 13 18 18 C 1.38397 * 126.88992 * 7.32009 * 17 15 14 19 19 C 1.39673 * 105.36237 * 180.02562 * 18 17 15 20 20 N 1.30868 * 107.85923 * 0.02562 * 19 18 17 21 21 N 1.28441 * 110.92746 * 0.02562 * 20 19 18 22 22 C 1.46494 * 125.18892 * 180.02562 * 21 20 19 23 23 C 1.53001 * 109.47424 * 85.51292 * 22 21 20 24 24 C 1.53772 * 113.61846 * 272.63503 * 23 22 21 25 25 C 1.53777 * 87.08146 * 220.01776 * 24 23 22 26 26 C 1.53773 * 87.08361 * 25.42875 * 25 24 23 27 27 C 1.46778 * 109.32154 * 0.80987 * 14 13 11 28 28 C 1.54156 * 106.52511 * 341.08712 * 27 14 13 29 29 H 1.09001 * 113.83592 * 265.67971 * 28 27 14 30 30 C 1.46755 * 125.32505 * 185.13379 * 9 7 2 31 31 H 0.97004 * 120.00095 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.76442 * 61.17773 * 10 9 7 33 33 H 1.08997 * 109.76249 * 300.45567 * 10 9 7 34 34 H 1.09007 * 109.77170 * 146.63293 * 13 11 10 35 35 H 1.08996 * 109.77304 * 25.87446 * 13 11 10 36 36 H 1.08003 * 127.31883 * 0.26271 * 18 17 15 37 37 H 1.07994 * 126.06834 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47610 * 205.51376 * 22 21 20 39 39 H 1.08997 * 109.47550 * 325.51637 * 22 21 20 40 40 H 1.09010 * 112.84571 * 43.94029 * 23 22 21 41 41 H 1.09005 * 113.61420 * 334.56092 * 24 23 22 42 42 H 1.09002 * 113.62112 * 105.46765 * 24 23 22 43 43 H 1.09002 * 113.61450 * 270.87515 * 25 24 23 44 44 H 1.09007 * 113.61673 * 139.97984 * 25 24 23 45 45 H 1.08997 * 113.61912 * 220.01922 * 26 25 24 46 46 H 1.09002 * 113.69201 * 89.12918 * 26 25 24 47 47 H 1.09000 * 110.02561 * 100.51138 * 27 14 13 48 48 H 1.09005 * 110.02272 * 221.92448 * 27 14 13 49 49 H 1.08998 * 110.00891 * 42.36485 * 30 9 7 50 50 H 1.09000 * 110.00783 * 280.99642 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5045 2.6199 0.8031 6 1 3.5965 1.4119 0.5917 7 6 2.0102 -1.2022 -0.0005 8 1 3.0866 -1.2043 0.0875 9 7 1.3300 -2.3854 -0.1127 10 6 -0.1119 -2.5158 -0.3449 11 6 -0.4536 -4.0139 -0.3823 12 1 -0.6633 -4.3789 -1.3876 13 6 -1.6012 -4.2989 0.6001 14 7 -1.0103 -4.7073 1.8789 15 6 -1.7026 -5.0496 2.9835 16 8 -2.9174 -4.9895 2.9828 17 6 -0.9885 -5.4959 4.1904 18 6 0.3798 -5.4848 4.3980 19 6 0.5634 -6.0013 5.6827 20 7 -0.6160 -6.2871 6.1727 21 7 -1.5434 -6.0061 5.3296 22 6 -2.9775 -6.2010 5.5562 23 6 -3.5492 -4.9826 6.2838 24 6 -3.4424 -5.0733 7.8151 25 6 -4.8483 -4.4527 7.8714 26 6 -5.0754 -5.0337 6.4658 27 6 0.4531 -4.6788 1.7689 28 6 0.7801 -4.7048 0.2627 29 1 0.9680 -5.7041 -0.1301 30 6 1.9302 -3.7213 -0.0196 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3753 -2.0540 -1.2965 33 1 -0.6607 -2.0327 0.4635 34 1 -2.2289 -5.1007 0.2111 35 1 -2.1984 -3.3981 0.7408 36 1 1.1431 -5.1451 3.7136 37 1 1.5104 -6.1408 6.1825 38 1 -3.4835 -6.3226 4.5984 39 1 -3.1316 -7.0925 6.1642 40 1 -3.1897 -4.0382 5.8749 41 1 -3.4014 -6.0960 8.1901 42 1 -2.6662 -4.4351 8.2374 43 1 -4.8438 -3.3630 7.8980 44 1 -5.4898 -4.8930 8.6348 45 1 -5.6174 -4.3635 5.7986 46 1 -5.4809 -6.0454 6.4704 47 1 0.8438 -3.7682 2.2230 48 1 0.8812 -5.5538 2.2580 49 1 2.6534 -3.7493 0.7953 50 1 2.4177 -3.9775 -0.9603 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048822420.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:11 Heat of formation + Delta-G solvation = 90.112946 kcal Electronic energy + Delta-G solvation = -31155.988558 eV Core-core repulsion = 27186.079510 eV Total energy + Delta-G solvation = -3969.909049 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.59598 -41.42238 -39.82418 -39.50443 -36.68353 -34.44743 -33.98923 -32.75647 -31.17375 -31.06871 -29.23626 -27.49369 -27.09334 -26.57473 -25.42244 -24.41454 -23.15048 -22.47737 -21.75646 -20.74581 -20.53805 -20.44441 -18.91280 -18.20398 -17.90529 -17.30846 -17.00448 -16.61496 -16.54661 -16.18756 -15.88362 -15.54348 -15.26510 -15.06859 -14.85974 -14.65218 -14.37931 -14.24270 -13.88910 -13.51192 -13.41962 -13.40213 -13.23501 -13.08022 -12.99239 -12.75290 -12.61292 -12.55825 -11.97782 -11.93957 -11.85409 -11.84368 -11.74510 -11.42087 -11.40574 -11.32149 -11.28083 -11.11625 -10.68747 -10.26708 -9.98028 -9.69923 -8.83597 -7.81721 -5.18574 0.17963 1.28029 1.46572 1.47244 1.56186 1.64520 2.02211 2.08188 2.50862 3.18201 3.35504 3.40496 3.48866 3.61651 3.63223 3.67070 3.73433 3.86438 3.90865 3.96145 4.11193 4.17439 4.23150 4.29121 4.32967 4.46322 4.53212 4.55946 4.66758 4.72809 4.74829 4.77634 4.80079 4.83752 4.85592 4.92737 5.01116 5.03767 5.07729 5.11732 5.18491 5.20300 5.41828 5.47546 5.50991 5.52449 5.63492 5.75242 5.81753 6.25080 6.32824 6.86200 7.08211 7.13164 7.83584 8.44302 9.26041 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002997 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.250691 B = 9339.370104 C = 9871.894451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.067 4.067 3 Si 0.972 3.028 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.264 1.264 7 C -0.234 4.234 8 H 0.087 0.913 9 N -0.622 5.622 10 C 0.190 3.810 11 C -0.110 4.110 12 H 0.119 0.881 13 C 0.128 3.872 14 N -0.591 5.591 15 C 0.595 3.405 16 O -0.574 6.574 17 C -0.056 4.056 18 C -0.194 4.194 19 C -0.005 4.005 20 N -0.285 5.285 21 N -0.258 5.258 22 C 0.126 3.874 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.135 4.135 26 C -0.123 4.123 27 C 0.103 3.897 28 C -0.093 4.093 29 H 0.139 0.861 30 C 0.138 3.862 31 H 0.242 0.758 32 H -0.007 1.007 33 H 0.022 0.978 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.186 0.814 37 H 0.220 0.780 38 H 0.103 0.897 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.056 0.944 48 H 0.115 0.885 49 H 0.051 0.949 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -17.477 11.086 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.801 3.199 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.188 1.188 7 C -0.363 4.363 8 H 0.104 0.896 9 N -0.348 5.348 10 C 0.065 3.935 11 C -0.130 4.130 12 H 0.137 0.863 13 C 0.006 3.994 14 N -0.322 5.322 15 C 0.384 3.616 16 O -0.455 6.455 17 C -0.184 4.184 18 C -0.222 4.222 19 C -0.181 4.181 20 N -0.118 5.118 21 N -0.046 5.046 22 C 0.006 3.994 23 C -0.146 4.146 24 C -0.163 4.163 25 C -0.173 4.173 26 C -0.161 4.161 27 C -0.019 4.019 28 C -0.113 4.113 29 H 0.157 0.843 30 C 0.013 3.987 31 H 0.052 0.948 32 H 0.011 0.989 33 H 0.040 0.960 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.203 0.797 37 H 0.236 0.764 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.081 0.919 46 H 0.123 0.877 47 H 0.074 0.926 48 H 0.133 0.867 49 H 0.069 0.931 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.634 -17.711 12.123 21.957 hybrid contribution 0.578 2.208 -1.065 2.518 sum -4.055 -15.503 11.059 19.470 Atomic orbital electron populations 1.70192 1.06332 1.24861 1.58551 1.25608 0.96419 1.00984 1.03021 0.85141 0.78015 0.79636 0.77084 1.21686 1.22855 1.18833 1.19443 0.91305 0.83706 1.41839 0.89558 1.44499 1.04345 1.01414 1.84551 1.20862 0.84926 0.90600 0.97150 1.22999 0.94288 0.96426 0.99285 0.86287 1.21769 0.95928 0.99482 0.82270 1.47904 1.08634 1.64580 1.11113 1.16776 0.85696 0.77605 0.81535 1.90735 1.14092 1.56940 1.83765 1.21283 0.94317 1.11185 0.91616 1.23134 0.93687 1.05611 0.99807 1.24183 0.96744 1.02813 0.94324 1.73160 0.98074 1.21047 1.19485 1.45920 1.08007 1.42487 1.08191 1.22368 0.73017 1.00203 1.03767 1.22819 0.98423 0.96607 0.96770 1.22957 0.97562 1.02159 0.93574 1.22778 0.96795 1.00395 0.97299 1.22885 0.92931 1.02820 0.97421 1.22668 0.78881 1.02541 0.97789 1.23053 0.94454 1.00360 0.93397 0.84330 1.21433 0.94560 0.83747 0.99002 0.94822 0.98868 0.95959 0.89655 0.93757 0.79728 0.76395 0.87896 0.86365 0.92236 0.88341 0.92829 0.90819 0.89186 0.91877 0.87716 0.92572 0.86726 0.93100 0.94784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.28 10.34 21.65 0.22 -57.06 16 2 C -0.07 -3.79 5.46 84.86 0.46 -3.33 16 3 Si 0.97 45.56 29.56 68.60 2.03 47.58 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.23 -12.56 10.24 84.03 0.86 -11.70 16 8 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -29.78 3.37 -697.84 -2.35 -32.13 16 10 C 0.19 8.96 4.80 86.59 0.42 9.38 16 11 C -0.11 -3.65 4.02 -9.48 -0.04 -3.68 16 12 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 13 C 0.13 4.26 6.23 86.59 0.54 4.80 16 14 N -0.59 -19.24 3.31 -821.16 -2.72 -21.96 16 15 C 0.59 20.43 7.80 86.59 0.68 21.10 16 16 O -0.57 -22.13 15.01 -4.11 -0.06 -22.19 16 17 C -0.06 -1.69 6.91 40.78 0.28 -1.40 16 18 C -0.19 -4.83 9.31 22.65 0.21 -4.62 16 19 C -0.01 -0.12 12.03 85.18 1.02 0.90 16 20 N -0.29 -7.37 11.90 -57.14 -0.68 -8.05 16 21 N -0.26 -7.11 3.35 -334.70 -1.12 -8.23 16 22 C 0.13 2.96 5.69 86.38 0.49 3.45 16 23 C -0.13 -2.94 3.96 -10.27 -0.04 -2.98 16 24 C -0.13 -2.36 7.63 31.12 0.24 -2.13 16 25 C -0.14 -2.22 8.08 31.12 0.25 -1.97 16 26 C -0.12 -2.23 7.64 31.12 0.24 -1.99 16 27 C 0.10 2.91 4.45 86.72 0.39 3.29 16 28 C -0.09 -2.56 4.19 -9.26 -0.04 -2.60 16 29 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 30 C 0.14 4.78 6.37 86.65 0.55 5.33 16 31 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 32 H -0.01 -0.37 7.86 -2.39 -0.02 -0.39 16 33 H 0.02 1.24 6.08 -2.39 -0.01 1.23 16 34 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 35 H 0.04 1.76 7.44 -2.39 -0.02 1.74 16 36 H 0.19 3.99 4.82 -2.91 -0.01 3.97 16 37 H 0.22 3.09 8.06 -2.91 -0.02 3.06 16 38 H 0.10 2.70 6.23 -2.39 -0.01 2.68 16 39 H 0.12 2.14 7.85 -2.39 -0.02 2.13 16 40 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.10 1.56 7.90 -2.38 -0.02 1.55 16 42 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.10 1.46 8.10 -2.39 -0.02 1.44 16 47 H 0.06 1.94 7.50 -2.39 -0.02 1.92 16 48 H 0.12 2.45 5.51 -2.38 -0.01 2.44 16 49 H 0.05 1.67 7.94 -2.39 -0.02 1.65 16 50 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.76 387.70 2.77 -69.99 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.94 Total: 20.19 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.51 Total: 11.85 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -6.65 Total: -127.42 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -72.76 2.77 -69.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048822420.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.102 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds