Wall clock time and date at job start Wed Apr 1 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48499 * 109.46894 * 90.00115 * 3 2 1 5 5 H 1.48504 * 109.47111 * 210.00668 * 3 2 1 6 6 H 1.48498 * 109.46904 * 330.00146 * 3 2 1 7 7 C 1.38814 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47120 * 125.76542 * 359.69495 * 9 7 2 11 11 C 1.54548 * 107.26590 * 182.47996 * 10 9 7 12 12 C 1.54418 * 102.36296 * 22.02310 * 11 10 9 13 13 H 1.09002 * 110.71717 * 80.35467 * 12 11 10 14 14 C 1.48209 * 125.76841 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52318 * 32.96178 * 14 9 7 16 16 C 1.53010 * 107.12226 * 270.84006 * 14 9 7 17 17 C 1.52733 * 110.79993 * 191.91469 * 16 14 9 18 18 C 1.53467 * 108.43958 * 63.77441 * 17 16 14 19 19 N 1.45117 * 111.61404 * 203.21181 * 12 11 10 20 20 C 1.34771 * 119.57501 * 248.69137 * 19 12 11 21 21 O 1.21626 * 120.00395 * 352.42044 * 20 19 12 22 22 C 1.47168 * 120.00305 * 172.42351 * 20 19 12 23 23 C 1.38410 * 126.87909 * 334.04789 * 22 20 19 24 24 C 1.39675 * 105.35650 * 179.97438 * 23 22 20 25 25 N 1.30862 * 107.86064 * 0.02562 * 24 23 22 26 26 N 1.28436 * 110.92795 * 359.70994 * 25 24 23 27 27 C 1.46502 * 125.18885 * 180.27691 * 26 25 24 28 28 C 1.53784 * 113.61549 * 31.78006 * 27 26 25 29 29 C 1.53782 * 87.07975 * 220.01448 * 28 27 26 30 30 C 1.53783 * 87.08342 * 25.43135 * 29 28 27 31 31 H 0.97005 * 119.99791 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.88292 * 302.01942 * 10 9 7 33 33 H 1.08996 * 109.89242 * 63.19950 * 10 9 7 34 34 H 1.08999 * 111.02410 * 263.73051 * 11 10 9 35 35 H 1.09002 * 110.84246 * 140.22892 * 11 10 9 36 36 H 1.08999 * 109.21068 * 312.26007 * 16 14 9 37 37 H 1.09005 * 109.20867 * 71.57681 * 16 14 9 38 38 H 1.08991 * 109.64445 * 183.46214 * 17 16 14 39 39 H 1.09000 * 109.64244 * 303.88382 * 17 16 14 40 40 H 1.09004 * 109.82806 * 61.44956 * 18 17 16 41 41 H 1.08999 * 109.83393 * 182.40071 * 18 17 16 42 42 H 1.08003 * 127.32052 * 359.97438 * 23 22 20 43 43 H 1.08001 * 126.06627 * 179.97438 * 24 23 22 44 44 H 1.08999 * 112.84889 * 163.08451 * 27 26 25 45 45 H 1.08998 * 113.60910 * 334.56538 * 28 27 26 46 46 H 1.08993 * 113.61571 * 105.46664 * 28 27 26 47 47 H 1.08994 * 113.61633 * 270.88153 * 29 28 27 48 48 H 1.09002 * 113.61433 * 139.97651 * 29 28 27 49 49 H 1.08993 * 113.61565 * 220.02007 * 30 29 28 50 50 H 1.09000 * 113.61611 * 89.11409 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4401 -0.7002 6 1 1.4476 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1383 -2.5359 0.0064 11 6 -0.4462 -4.0491 0.0674 12 6 0.8585 -4.6286 0.6559 13 1 0.8821 -4.5036 1.7385 14 6 1.9338 -3.7396 -0.0016 15 1 2.8742 -3.7553 0.5494 16 6 2.1371 -4.1409 -1.4641 17 6 2.4832 -5.6243 -1.5763 18 6 1.2871 -6.4415 -1.0694 19 7 1.0227 -6.0296 0.3151 20 6 0.9303 -6.9645 1.2814 21 8 0.8488 -6.6280 2.4474 22 6 0.9281 -8.3926 0.9259 23 6 0.5218 -8.9491 -0.2744 24 6 0.7079 -10.3254 -0.1258 25 7 1.1856 -10.5386 1.0737 26 7 1.3319 -9.4339 1.7123 27 6 1.8492 -9.3099 3.0773 28 6 2.8875 -10.3839 3.4425 29 6 2.2178 -10.4490 4.8253 30 6 0.9369 -9.9420 4.1417 31 1 -0.4850 0.8401 0.0004 32 1 -0.5574 -2.0349 0.8790 33 1 -0.5582 -2.1107 -0.9052 34 1 -0.6337 -4.4505 -0.9285 35 1 -1.2903 -4.2468 0.7281 36 1 1.2212 -3.9431 -2.0209 37 1 2.9488 -3.5501 -1.8886 38 1 2.6839 -5.8759 -2.6176 39 1 3.3628 -5.8422 -0.9706 40 1 0.4129 -6.2403 -1.6886 41 1 1.5261 -7.5045 -1.0998 42 1 0.1417 -8.4296 -1.1417 43 1 0.4945 -11.0797 -0.8687 44 1 2.1649 -8.2952 3.3198 45 1 2.7869 -11.3027 2.8649 46 1 3.9110 -10.0101 3.4703 47 1 2.6353 -9.7463 5.5463 48 1 2.1303 -11.4609 5.2209 49 1 0.3858 -9.2116 4.7339 50 1 0.3030 -10.7401 3.7552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049482676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:39 Heat of formation + Delta-G solvation = 111.230358 kcal Electronic energy + Delta-G solvation = -31532.742738 eV Core-core repulsion = 27563.749409 eV Total energy + Delta-G solvation = -3968.993329 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.77055 -40.21668 -38.72748 -37.92377 -35.41205 -32.57869 -32.40797 -31.89100 -30.93310 -28.99623 -28.15168 -26.03145 -25.88428 -25.05897 -24.34841 -22.63964 -22.36582 -21.74894 -20.48556 -20.04069 -19.17855 -18.50290 -17.48193 -16.92935 -16.73280 -16.11925 -15.67371 -15.57794 -14.81344 -14.80577 -14.51848 -14.42040 -14.00578 -13.76325 -13.49617 -13.26588 -13.16141 -12.87436 -12.84382 -12.54366 -12.47911 -12.09913 -11.96231 -11.54032 -11.40296 -11.18054 -11.02641 -10.93491 -10.92095 -10.80280 -10.72114 -10.64308 -10.46563 -10.15940 -10.09792 -9.78763 -9.65171 -9.63684 -9.26257 -8.99112 -8.64247 -8.34501 -6.88386 -5.72988 -3.07159 1.24393 2.22031 2.49595 3.07381 3.15077 3.39416 3.44498 3.46125 4.02894 4.19154 4.33085 4.44741 4.47111 4.49825 4.70472 4.97137 5.00121 5.14432 5.23518 5.28817 5.32585 5.34905 5.41685 5.42692 5.49039 5.54533 5.55999 5.58030 5.60631 5.63233 5.67403 5.71239 5.82543 5.98087 6.02401 6.09472 6.17165 6.29389 6.32057 6.38758 6.47298 6.55590 6.65208 6.70210 6.91168 7.03040 7.45730 7.53534 7.58934 7.80132 7.95726 8.15899 8.22431 9.18586 9.78194 10.43819 11.38272 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002828 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.848793 B = 9900.252174 C =10526.493198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.151 4.151 12 C 0.131 3.869 13 H 0.104 0.896 14 C 0.157 3.843 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.086 3.914 19 N -0.573 5.573 20 C 0.582 3.418 21 O -0.541 6.541 22 C -0.026 4.026 23 C -0.200 4.200 24 C -0.006 4.006 25 N -0.280 5.280 26 N -0.247 5.247 27 C 0.119 3.881 28 C -0.139 4.139 29 C -0.137 4.137 30 C -0.139 4.139 31 H 0.252 0.748 32 H 0.051 0.949 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.139 0.861 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -22.331 0.691 22.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.322 5.322 10 C 0.056 3.944 11 C -0.191 4.191 12 C 0.027 3.973 13 H 0.122 0.878 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.036 4.036 19 N -0.304 5.304 20 C 0.369 3.631 21 O -0.419 6.419 22 C -0.154 4.154 23 C -0.228 4.228 24 C -0.182 4.182 25 N -0.112 5.112 26 N -0.034 5.034 27 C 0.018 3.982 28 C -0.177 4.177 29 C -0.175 4.175 30 C -0.178 4.178 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.184 0.816 43 H 0.202 0.798 44 H 0.156 0.844 45 H 0.120 0.880 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.801 -22.670 2.166 22.945 hybrid contribution 0.020 1.645 -0.823 1.840 sum 2.822 -21.025 1.343 21.256 Atomic orbital electron populations 1.69951 1.04866 1.25080 1.56913 1.24792 0.95705 0.97615 1.02185 0.86126 0.78565 0.83517 0.77579 1.21603 1.20721 1.21702 1.19027 0.90412 0.82173 1.43896 0.90440 1.44713 1.01461 0.99273 1.86785 1.21170 0.84325 0.87579 1.01324 1.23133 0.96190 0.99844 0.99891 1.21873 0.96871 0.77230 1.01297 0.87841 1.21347 0.94445 0.86113 0.93267 0.92231 1.22132 1.02021 0.93169 0.99735 1.21924 0.97369 0.97059 1.00777 1.22510 0.98671 1.00605 0.81814 1.47338 1.68694 1.06432 1.07935 1.17048 0.77316 0.83356 0.85399 1.90790 1.50889 1.81960 1.18297 1.21543 1.09522 0.90908 0.93472 1.22458 1.07984 0.94701 0.97680 1.23566 1.04137 0.96030 0.94429 1.73048 1.19610 1.10762 1.07773 1.45767 1.43101 1.01932 1.12575 1.23579 0.96807 1.02414 0.75374 1.23329 0.98086 0.99234 0.97052 1.22706 0.96193 1.02451 0.96157 1.23328 0.97302 1.00815 0.96307 0.93718 0.93032 0.93913 0.92079 0.91993 0.91761 0.92097 0.91153 0.91940 0.90935 0.88075 0.81633 0.79793 0.84377 0.88043 0.90427 0.89343 0.90208 0.89961 0.89071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.33 55.49 0.57 -26.08 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.23 -6.16 10.29 -15.06 -0.16 -6.31 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -14.69 2.91 -162.19 -0.47 -15.16 16 10 C 0.18 4.30 5.19 -2.89 -0.02 4.28 16 11 C -0.15 -2.84 6.08 -25.17 -0.15 -3.00 16 12 C 0.13 2.42 3.12 -67.28 -0.21 2.21 16 13 H 0.10 2.15 6.93 -51.93 -0.36 1.79 16 14 C 0.16 3.13 3.59 -66.34 -0.24 2.89 16 15 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 16 C -0.13 -2.22 5.10 -26.86 -0.14 -2.36 16 17 C -0.13 -1.70 6.11 -26.63 -0.16 -1.87 16 18 C 0.09 1.04 4.78 -3.61 -0.02 1.02 16 19 N -0.57 -8.76 2.73 -166.32 -0.45 -9.22 16 20 C 0.58 9.28 7.45 -12.64 -0.09 9.19 16 21 O -0.54 -10.10 14.57 5.25 0.08 -10.02 16 22 C -0.03 -0.35 6.42 -82.06 -0.53 -0.87 16 23 C -0.20 -2.18 8.55 -38.98 -0.33 -2.51 16 24 C -0.01 -0.06 12.03 -17.43 -0.21 -0.27 16 25 N -0.28 -3.39 11.06 30.59 0.34 -3.05 16 26 N -0.25 -3.17 3.48 -49.90 -0.17 -3.35 16 27 C 0.12 1.35 4.19 -67.11 -0.28 1.07 16 28 C -0.14 -1.23 7.69 -25.92 -0.20 -1.43 16 29 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 30 C -0.14 -1.36 7.88 -25.92 -0.20 -1.57 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 32 H 0.05 1.38 7.32 -51.93 -0.38 1.00 16 33 H 0.04 1.11 7.59 -51.93 -0.39 0.72 16 34 H 0.06 1.05 6.80 -51.93 -0.35 0.70 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.16 7.13 -51.93 -0.37 0.79 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 41 H 0.10 1.05 4.16 -51.93 -0.22 0.83 16 42 H 0.17 1.45 6.30 -52.48 -0.33 1.12 16 43 H 0.19 1.24 8.06 -52.49 -0.42 0.82 16 44 H 0.14 1.76 6.62 -51.93 -0.34 1.41 16 45 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -31.50 381.55 -10.36 -41.86 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.73 Total: 3.44 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -3.24 Total: -1.05 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: -0.19 Total: -56.86 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.50 -10.36 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049482676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.086 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds