Wall clock time and date at job start Wed Apr 1 2020 02:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00252 * 2 1 4 4 H 1.48499 * 109.46894 * 90.00115 * 3 2 1 5 5 H 1.48504 * 109.47111 * 210.00668 * 3 2 1 6 6 H 1.48498 * 109.46904 * 330.00146 * 3 2 1 7 7 C 1.38814 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00348 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.47120 * 125.76542 * 359.69495 * 9 7 2 11 11 C 1.54548 * 107.26590 * 182.47996 * 10 9 7 12 12 C 1.54418 * 102.36296 * 22.02310 * 11 10 9 13 13 H 1.09002 * 110.71717 * 80.35467 * 12 11 10 14 14 C 1.48209 * 125.76841 * 179.97438 * 9 7 2 15 15 H 1.09002 * 111.52318 * 32.96178 * 14 9 7 16 16 C 1.53010 * 107.12226 * 270.84006 * 14 9 7 17 17 C 1.52733 * 110.79993 * 191.91469 * 16 14 9 18 18 C 1.53467 * 108.43958 * 63.77441 * 17 16 14 19 19 N 1.45117 * 111.61404 * 203.21181 * 12 11 10 20 20 C 1.34771 * 119.57501 * 248.69137 * 19 12 11 21 21 O 1.21626 * 120.00395 * 352.42044 * 20 19 12 22 22 C 1.47168 * 120.00305 * 172.42351 * 20 19 12 23 23 C 1.38410 * 126.87909 * 334.04789 * 22 20 19 24 24 C 1.39675 * 105.35650 * 179.97438 * 23 22 20 25 25 N 1.30862 * 107.86064 * 0.02562 * 24 23 22 26 26 N 1.28436 * 110.92795 * 359.70994 * 25 24 23 27 27 C 1.46502 * 125.18885 * 180.27691 * 26 25 24 28 28 C 1.53784 * 113.61549 * 31.78006 * 27 26 25 29 29 C 1.53782 * 87.07975 * 220.01448 * 28 27 26 30 30 C 1.53783 * 87.08342 * 25.43135 * 29 28 27 31 31 H 0.97005 * 119.99791 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.88292 * 302.01942 * 10 9 7 33 33 H 1.08996 * 109.89242 * 63.19950 * 10 9 7 34 34 H 1.08999 * 111.02410 * 263.73051 * 11 10 9 35 35 H 1.09002 * 110.84246 * 140.22892 * 11 10 9 36 36 H 1.08999 * 109.21068 * 312.26007 * 16 14 9 37 37 H 1.09005 * 109.20867 * 71.57681 * 16 14 9 38 38 H 1.08991 * 109.64445 * 183.46214 * 17 16 14 39 39 H 1.09000 * 109.64244 * 303.88382 * 17 16 14 40 40 H 1.09004 * 109.82806 * 61.44956 * 18 17 16 41 41 H 1.08999 * 109.83393 * 182.40071 * 18 17 16 42 42 H 1.08003 * 127.32052 * 359.97438 * 23 22 20 43 43 H 1.08001 * 126.06627 * 179.97438 * 24 23 22 44 44 H 1.08999 * 112.84889 * 163.08451 * 27 26 25 45 45 H 1.08998 * 113.60910 * 334.56538 * 28 27 26 46 46 H 1.08993 * 113.61571 * 105.46664 * 28 27 26 47 47 H 1.08994 * 113.61633 * 270.88153 * 29 28 27 48 48 H 1.09002 * 113.61433 * 139.97651 * 29 28 27 49 49 H 1.08993 * 113.61565 * 220.02007 * 30 29 28 50 50 H 1.09000 * 113.61611 * 89.11409 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4401 -0.7002 6 1 1.4476 2.6526 -0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1383 -2.5359 0.0064 11 6 -0.4462 -4.0491 0.0674 12 6 0.8585 -4.6286 0.6559 13 1 0.8821 -4.5036 1.7385 14 6 1.9338 -3.7396 -0.0016 15 1 2.8742 -3.7553 0.5494 16 6 2.1371 -4.1409 -1.4641 17 6 2.4832 -5.6243 -1.5763 18 6 1.2871 -6.4415 -1.0694 19 7 1.0227 -6.0296 0.3151 20 6 0.9303 -6.9645 1.2814 21 8 0.8488 -6.6280 2.4474 22 6 0.9281 -8.3926 0.9259 23 6 0.5218 -8.9491 -0.2744 24 6 0.7079 -10.3254 -0.1258 25 7 1.1856 -10.5386 1.0737 26 7 1.3319 -9.4339 1.7123 27 6 1.8492 -9.3099 3.0773 28 6 2.8875 -10.3839 3.4425 29 6 2.2178 -10.4490 4.8253 30 6 0.9369 -9.9420 4.1417 31 1 -0.4850 0.8401 0.0004 32 1 -0.5574 -2.0349 0.8790 33 1 -0.5582 -2.1107 -0.9052 34 1 -0.6337 -4.4505 -0.9285 35 1 -1.2903 -4.2468 0.7281 36 1 1.2212 -3.9431 -2.0209 37 1 2.9488 -3.5501 -1.8886 38 1 2.6839 -5.8759 -2.6176 39 1 3.3628 -5.8422 -0.9706 40 1 0.4129 -6.2403 -1.6886 41 1 1.5261 -7.5045 -1.0998 42 1 0.1417 -8.4296 -1.1417 43 1 0.4945 -11.0797 -0.8687 44 1 2.1649 -8.2952 3.3198 45 1 2.7869 -11.3027 2.8649 46 1 3.9110 -10.0101 3.4703 47 1 2.6353 -9.7463 5.5463 48 1 2.1303 -11.4609 5.2209 49 1 0.3858 -9.2116 4.7339 50 1 0.3030 -10.7401 3.7552 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049482676.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:37 Heat of formation + Delta-G solvation = 93.370264 kcal Electronic energy + Delta-G solvation = -31533.517210 eV Core-core repulsion = 27563.749409 eV Total energy + Delta-G solvation = -3969.767801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.66414 -41.56094 -39.48185 -39.38628 -36.89961 -34.31748 -33.81085 -32.75974 -32.13957 -30.71986 -29.67267 -26.93436 -26.76544 -26.36768 -25.97900 -23.86454 -23.51149 -22.74251 -21.95476 -21.39025 -20.14977 -19.72060 -18.90858 -18.54373 -17.87627 -17.09186 -16.83322 -16.68839 -16.47018 -16.07387 -15.90205 -15.55502 -15.32797 -15.04463 -14.67240 -14.59852 -14.16996 -14.13648 -13.88867 -13.75768 -13.59833 -13.52142 -13.27146 -13.08619 -12.84603 -12.62918 -12.38301 -12.32471 -12.22253 -12.09762 -11.99584 -11.79169 -11.71414 -11.64942 -11.54809 -11.37373 -11.21128 -11.08300 -10.72059 -10.20442 -9.86840 -9.66386 -8.90367 -7.84756 -5.20466 0.23918 1.26828 1.45365 1.47089 1.55425 1.66501 1.96522 2.01490 2.49213 3.24950 3.27892 3.33979 3.44629 3.54289 3.68447 3.74596 3.83542 3.88950 3.96534 4.02217 4.10516 4.12535 4.19452 4.35990 4.47137 4.53736 4.55521 4.60835 4.64929 4.66942 4.71448 4.78395 4.82130 4.85973 4.87747 4.94278 4.96760 4.97235 5.05879 5.17288 5.31407 5.33852 5.39515 5.51529 5.57509 5.61989 5.63926 5.73431 5.79264 6.17356 6.25476 6.91005 7.08677 7.13104 7.74385 8.39606 9.25230 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.002828 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.848793 B = 9900.252174 C =10526.493198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.064 4.064 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.268 1.268 6 H -0.294 1.294 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.618 5.618 10 C 0.192 3.808 11 C -0.132 4.132 12 C 0.148 3.852 13 H 0.072 0.928 14 C 0.152 3.848 15 H 0.047 0.953 16 C -0.119 4.119 17 C -0.122 4.122 18 C 0.084 3.916 19 N -0.571 5.571 20 C 0.581 3.419 21 O -0.580 6.580 22 C -0.056 4.056 23 C -0.183 4.183 24 C -0.001 4.001 25 N -0.290 5.290 26 N -0.254 5.254 27 C 0.103 3.897 28 C -0.129 4.129 29 C -0.123 4.123 30 C -0.139 4.139 31 H 0.246 0.754 32 H 0.010 0.990 33 H 0.015 0.985 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.128 0.872 42 H 0.193 0.807 43 H 0.223 0.777 44 H 0.116 0.884 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.071 0.929 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -25.411 -1.130 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.193 1.193 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.098 0.902 9 N -0.343 5.343 10 C 0.067 3.933 11 C -0.171 4.171 12 C 0.042 3.958 13 H 0.090 0.910 14 C 0.045 3.955 15 H 0.065 0.935 16 C -0.159 4.159 17 C -0.161 4.161 18 C -0.036 4.036 19 N -0.301 5.301 20 C 0.369 3.631 21 O -0.460 6.460 22 C -0.184 4.184 23 C -0.211 4.211 24 C -0.176 4.176 25 N -0.122 5.122 26 N -0.042 5.042 27 C 0.002 3.998 28 C -0.167 4.167 29 C -0.161 4.161 30 C -0.177 4.177 31 H 0.056 0.944 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.146 0.854 42 H 0.210 0.790 43 H 0.239 0.761 44 H 0.134 0.866 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.090 0.910 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.677 -25.802 0.322 26.065 hybrid contribution -0.228 2.542 -0.241 2.564 sum 3.449 -23.260 0.081 23.514 Atomic orbital electron populations 1.70165 1.06220 1.25225 1.58325 1.25602 0.96573 1.00830 1.02736 0.85111 0.77755 0.79355 0.77305 1.21676 1.19273 1.22035 1.19379 0.90854 0.83471 1.42774 0.90166 1.44956 1.02024 1.00500 1.86790 1.20849 0.83949 0.90541 0.97987 1.22938 0.96536 0.96104 1.01569 1.21335 0.95887 0.79274 0.99256 0.91000 1.21539 0.94031 0.84407 0.95527 0.93510 1.21914 1.01231 0.96320 0.96437 1.21887 0.97577 0.93528 1.03083 1.22838 0.99151 1.01875 0.79764 1.47287 1.68649 1.04723 1.09470 1.17414 0.76312 0.84538 0.84786 1.90770 1.52503 1.82756 1.20022 1.21371 1.12235 0.89666 0.95137 1.22820 1.06128 0.95046 0.97130 1.24243 1.02540 0.96607 0.94228 1.73065 1.19954 1.10506 1.08690 1.45903 1.43450 1.01921 1.12896 1.23690 0.98420 1.02112 0.75585 1.23283 0.97848 0.98089 0.97462 1.22694 0.94212 1.03525 0.95662 1.23314 0.97964 1.00364 0.96102 0.94424 0.97199 0.96712 0.89421 0.91373 0.92519 0.93339 0.87559 0.92139 0.88933 0.85449 0.78960 0.76088 0.86578 0.88123 0.89725 0.88605 0.88406 0.91042 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.41 10.33 21.65 0.22 -57.19 16 2 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 3 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 7 C -0.24 -13.20 10.29 84.03 0.86 -12.33 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -31.49 2.91 -667.05 -1.94 -33.43 16 10 C 0.19 9.56 5.19 86.79 0.45 10.01 16 11 C -0.13 -4.99 6.08 31.60 0.19 -4.80 16 12 C 0.15 5.52 3.12 46.15 0.14 5.66 16 13 H 0.07 3.15 6.93 -2.39 -0.02 3.13 16 14 C 0.15 6.17 3.59 45.08 0.16 6.33 16 15 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.12 -3.91 5.10 30.51 0.16 -3.76 16 17 C -0.12 -2.73 6.11 30.66 0.19 -2.55 16 18 C 0.08 1.72 4.78 86.47 0.41 2.13 16 19 N -0.57 -16.72 2.73 -798.36 -2.18 -18.91 16 20 C 0.58 18.26 7.45 86.59 0.64 18.90 16 21 O -0.58 -22.46 14.57 -4.11 -0.06 -22.52 16 22 C -0.06 -1.42 6.42 40.79 0.26 -1.16 16 23 C -0.18 -3.26 8.55 22.66 0.19 -3.07 16 24 C 0.00 -0.01 12.03 85.18 1.02 1.01 16 25 N -0.29 -6.27 11.06 -57.14 -0.63 -6.91 16 26 N -0.25 -6.20 3.48 -311.79 -1.08 -7.29 16 27 C 0.10 2.32 4.19 45.52 0.19 2.51 16 28 C -0.13 -2.12 7.69 31.12 0.24 -1.88 16 29 C -0.12 -1.70 8.08 31.12 0.25 -1.45 16 30 C -0.14 -2.69 7.88 31.12 0.25 -2.44 16 31 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 32 H 0.01 0.56 7.32 -2.38 -0.02 0.54 16 33 H 0.01 0.80 7.59 -2.39 -0.02 0.78 16 34 H 0.09 2.85 6.80 -2.39 -0.02 2.83 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.06 1.96 7.13 -2.39 -0.02 1.94 16 37 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.09 1.61 7.53 -2.38 -0.02 1.59 16 41 H 0.13 2.02 4.16 -2.39 -0.01 2.01 16 42 H 0.19 2.29 6.30 -2.91 -0.02 2.27 16 43 H 0.22 1.77 8.06 -2.91 -0.02 1.74 16 44 H 0.12 3.11 6.62 -2.39 -0.02 3.10 16 45 H 0.10 1.69 7.55 -2.39 -0.02 1.67 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -73.40 381.55 3.38 -70.01 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.94 Total: 18.18 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 6.09 Total: 9.92 kcal Atomic # 7 Polarization: -118.10 SS G_CDS: -5.62 Total: -123.72 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -73.40 3.38 -70.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049482676.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.385 kcal (2) G-P(sol) polarization free energy of solvation -73.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds