Wall clock time and date at job start Wed Apr 1 2020 02:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86792 * 120.00056 * 2 1 4 4 H 1.48496 * 109.47407 * 94.99981 * 3 2 1 5 5 H 1.48501 * 109.47377 * 215.00499 * 3 2 1 6 6 H 1.48507 * 109.47157 * 334.99841 * 3 2 1 7 7 C 1.38811 * 119.99948 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00213 * 174.92921 * 7 2 1 9 9 N 1.36940 * 120.00133 * 354.93590 * 7 2 1 10 10 C 1.48386 * 126.55873 * 4.65070 * 9 7 2 11 11 C 1.55411 * 107.00394 * 185.38652 * 10 9 7 12 12 C 1.53431 * 101.57637 * 22.97543 * 11 10 9 13 13 H 1.08993 * 111.75618 * 78.01858 * 12 11 10 14 14 C 1.45018 * 126.56362 * 184.96506 * 9 7 2 15 15 H 1.08997 * 108.70836 * 263.50123 * 14 9 7 16 16 C 1.51089 * 119.18968 * 28.77875 * 14 9 7 17 17 C 1.53871 * 107.33532 * 183.90292 * 16 14 9 18 18 C 1.52715 * 111.52398 * 303.07149 * 17 16 14 19 19 N 1.45728 * 116.37278 * 207.06920 * 12 11 10 20 20 C 1.34777 * 122.22285 * 350.07085 * 19 12 11 21 21 O 1.21273 * 120.00500 * 354.42063 * 20 19 12 22 22 C 1.50706 * 119.99775 * 174.41955 * 20 19 12 23 23 H 1.09000 * 109.67682 * 334.26438 * 22 20 19 24 24 C 1.53402 * 109.67966 * 94.77964 * 22 20 19 25 25 C 1.53123 * 109.44476 * 169.38281 * 24 22 20 26 26 C 1.53353 * 109.53013 * 289.99673 * 25 24 22 27 27 C 1.50864 * 108.41659 * 49.98289 * 26 25 24 28 28 N 1.33575 * 128.03181 * 163.25766 * 27 26 25 29 29 C 1.30913 * 109.12973 * 180.16588 * 28 27 26 30 30 N 1.35307 * 108.75506 * 359.91736 * 29 28 27 31 31 H 0.97008 * 126.49731 * 180.02562 * 30 29 28 32 32 C 1.35082 * 124.00059 * 343.33021 * 27 26 25 33 33 H 0.96994 * 119.99701 * 359.97438 * 1 2 3 34 34 H 1.09004 * 109.96183 * 304.90068 * 10 9 7 35 35 H 1.08997 * 109.96292 * 66.14107 * 10 9 7 36 36 H 1.09006 * 111.21918 * 264.82882 * 11 10 9 37 37 H 1.08998 * 110.87840 * 140.97170 * 11 10 9 38 38 H 1.09002 * 109.88270 * 303.35867 * 16 14 9 39 39 H 1.09004 * 109.88190 * 64.44553 * 16 14 9 40 40 H 1.08992 * 109.07448 * 63.60194 * 17 16 14 41 41 H 1.09001 * 109.06615 * 182.61957 * 17 16 14 42 42 H 1.09002 * 109.16300 * 168.93595 * 18 17 16 43 43 H 1.08995 * 109.16410 * 288.12584 * 18 17 16 44 44 H 1.09003 * 109.47315 * 289.37208 * 24 22 20 45 45 H 1.08996 * 109.47892 * 49.38200 * 24 22 20 46 46 H 1.08997 * 109.46130 * 50.01420 * 25 24 22 47 47 H 1.08997 * 109.46110 * 169.99655 * 25 24 22 48 48 H 1.09004 * 109.67647 * 169.71520 * 26 25 24 49 49 H 1.09001 * 109.67764 * 290.21089 * 26 25 24 50 50 H 1.07998 * 125.62436 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6034 1.9854 1.3947 5 1 3.4909 1.4730 -0.8031 6 1 1.3988 2.6808 -0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2041 -0.0821 9 7 1.3296 -2.3857 0.1057 10 6 -0.1439 -2.5588 0.1296 11 6 -0.4204 -4.0641 0.3998 12 6 0.8837 -4.4992 1.0811 13 1 0.9169 -4.1890 2.1254 14 6 1.9109 -3.7093 0.2216 15 1 1.9426 -4.1650 -0.7680 16 6 3.2663 -3.8645 0.8709 17 6 3.6600 -5.3480 0.7611 18 6 2.6109 -6.2549 1.4007 19 7 1.2513 -5.9022 0.9392 20 6 0.4076 -6.8174 0.4223 21 8 -0.7326 -6.5061 0.1507 22 6 0.8813 -8.2278 0.1818 23 1 1.9615 -8.2323 0.0362 24 6 0.5184 -9.1069 1.3854 25 6 0.7583 -10.5776 1.0331 26 6 -0.2854 -11.0359 0.0072 27 6 -0.3176 -10.0339 -1.1201 28 7 -0.8374 -10.1853 -2.3412 29 6 -0.6582 -9.0826 -3.0236 30 7 -0.0117 -8.1874 -2.2417 31 1 0.2499 -7.2869 -2.4904 32 6 0.2022 -8.7896 -1.0399 33 1 -0.4849 0.8400 0.0004 34 1 -0.5772 -1.9507 0.9237 35 1 -0.5679 -2.2719 -0.8327 36 1 -0.5757 -4.6099 -0.5309 37 1 -1.2712 -4.1886 1.0696 38 1 3.9991 -3.2471 0.3514 39 1 3.2106 -3.5723 1.9196 40 1 3.7649 -5.6117 -0.2912 41 1 4.6153 -5.5009 1.2634 42 1 2.8221 -7.2903 1.1332 43 1 2.6595 -6.1493 2.4844 44 1 1.1400 -8.8312 2.2373 45 1 -0.5314 -8.9605 1.6391 46 1 1.7568 -10.6918 0.6111 47 1 0.6730 -11.1854 1.9339 48 1 -0.0120 -12.0169 -0.3814 49 1 -1.2661 -11.0889 0.4800 50 1 -0.9751 -8.9147 -4.0423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049715161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:45 Heat of formation + Delta-G solvation = 31.838439 kcal Electronic energy + Delta-G solvation = -31964.591214 eV Core-core repulsion = 27992.155193 eV Total energy + Delta-G solvation = -3972.436021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.30409 -41.68987 -39.45402 -37.35215 -36.92479 -34.43072 -34.02231 -33.78631 -31.48794 -30.47671 -29.88452 -29.66704 -26.62117 -26.23526 -24.78012 -23.17174 -22.89485 -22.77983 -22.31291 -21.42881 -20.23696 -19.83027 -18.70671 -18.62457 -17.64080 -17.20107 -16.74223 -16.42146 -16.08304 -15.81511 -15.66801 -15.39001 -15.33925 -15.22488 -14.80028 -14.49020 -14.42941 -14.29281 -14.06674 -13.89759 -13.45528 -13.40595 -13.16888 -13.01218 -12.89325 -12.73483 -12.42152 -12.12824 -12.04067 -11.98190 -11.84397 -11.77824 -11.75847 -11.71402 -11.60199 -11.44997 -10.97145 -10.80636 -10.75712 -10.35950 -9.57901 -9.10038 -8.94021 -7.87607 -5.24148 1.04238 1.44353 1.46820 1.53550 1.54768 1.91569 2.15697 2.21621 2.48318 3.26386 3.31055 3.44516 3.59250 3.73258 3.81175 3.90228 3.96243 4.00542 4.07545 4.13798 4.22884 4.28428 4.32429 4.34912 4.43744 4.51997 4.54028 4.56059 4.67625 4.74946 4.81426 4.89211 4.99330 5.00515 5.03344 5.07444 5.14799 5.15855 5.21721 5.27544 5.35014 5.40605 5.45910 5.46546 5.54445 5.59828 5.68333 5.82952 6.15154 6.42544 6.50714 7.02167 7.10625 7.16279 7.72821 8.42709 9.24136 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019531 B = 0.003045 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.290731 B = 9194.659790 C = 9814.227122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.282 1.282 5 H -0.267 1.267 6 H -0.299 1.299 7 C -0.234 4.234 8 H 0.089 0.911 9 N -0.611 5.611 10 C 0.181 3.819 11 C -0.106 4.106 12 C 0.131 3.869 13 H 0.078 0.922 14 C 0.155 3.845 15 H 0.000 1.000 16 C -0.113 4.113 17 C -0.120 4.120 18 C 0.099 3.901 19 N -0.595 5.595 20 C 0.513 3.487 21 O -0.569 6.569 22 C -0.021 4.021 23 H 0.131 0.869 24 C -0.101 4.101 25 C -0.104 4.104 26 C -0.038 4.038 27 C -0.010 4.010 28 N -0.524 5.524 29 C 0.177 3.823 30 N -0.552 5.552 31 H 0.423 0.577 32 C -0.019 4.019 33 H 0.246 0.754 34 H 0.027 0.973 35 H -0.004 1.004 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.053 0.947 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.672 -22.836 3.399 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.226 1.226 7 C -0.362 4.362 8 H 0.107 0.893 9 N -0.336 5.336 10 C 0.056 3.944 11 C -0.145 4.145 12 C 0.026 3.974 13 H 0.096 0.904 14 C 0.047 3.953 15 H 0.017 0.983 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.022 4.022 19 N -0.328 5.328 20 C 0.302 3.698 21 O -0.448 6.448 22 C -0.043 4.043 23 H 0.149 0.851 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.076 4.076 27 C -0.140 4.140 28 N -0.244 5.244 29 C -0.105 4.105 30 N -0.152 5.152 31 H 0.261 0.739 32 C -0.136 4.136 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.014 0.986 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.131 0.869 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.120 0.880 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.640 -23.211 2.930 24.611 hybrid contribution -0.068 3.047 -0.509 3.090 sum 7.571 -20.163 2.421 21.674 Atomic orbital electron populations 1.70181 1.06565 1.25325 1.58199 1.25708 0.96477 1.01199 1.02660 0.85108 0.77548 0.78980 0.77791 1.20895 1.19190 1.22612 1.19383 0.91357 0.83199 1.42291 0.89300 1.44329 1.01878 1.01834 1.85569 1.21449 0.84158 0.91426 0.97408 1.22558 0.96419 0.95044 1.00434 1.22002 0.95890 0.80850 0.98685 0.90387 1.20935 0.94274 0.85109 0.94974 0.98251 1.21426 0.95373 0.97768 1.00566 1.21893 0.99682 0.92155 1.02150 1.22211 0.78675 1.00842 1.00423 1.48159 1.16069 1.06910 1.61613 1.21016 0.84861 0.87357 0.76582 1.90725 1.20335 1.80828 1.52947 1.20037 1.01497 0.90041 0.92721 0.85149 1.21594 1.02519 0.94892 0.94934 1.21581 0.99119 0.94160 0.99337 1.20086 1.00381 0.95893 0.91231 1.21010 1.02863 0.95300 0.94860 1.70038 1.23120 1.25525 1.05673 1.25675 0.99717 0.85158 0.99980 1.43003 1.44608 1.15887 1.11733 0.73855 1.20600 1.09222 0.95150 0.88667 0.94474 0.95462 0.98560 0.91605 0.92234 0.92616 0.91795 0.91792 0.86948 0.86120 0.89123 0.87521 0.92862 0.89867 0.88005 0.89836 0.91259 0.74711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.41 10.48 21.65 0.23 -58.18 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 3 Si 0.98 45.42 29.56 68.60 2.03 47.45 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.23 -12.82 9.91 84.03 0.83 -11.99 16 8 H 0.09 4.57 7.37 -2.91 -0.02 4.55 16 9 N -0.61 -31.33 3.35 -670.61 -2.25 -33.57 16 10 C 0.18 9.50 5.49 86.85 0.48 9.98 16 11 C -0.11 -4.54 4.94 31.57 0.16 -4.38 16 12 C 0.13 4.67 3.32 46.14 0.15 4.83 16 13 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 14 C 0.16 6.09 2.58 45.51 0.12 6.20 16 15 H 0.00 0.00 8.04 -2.39 -0.02 -0.02 16 16 C -0.11 -3.37 5.47 30.27 0.17 -3.20 16 17 C -0.12 -2.16 5.92 30.79 0.18 -1.98 16 18 C 0.10 1.55 6.29 86.03 0.54 2.09 16 19 N -0.60 -15.42 2.91 -791.14 -2.30 -17.72 16 20 C 0.51 13.97 6.58 87.66 0.58 14.55 16 21 O -0.57 -20.94 13.40 -3.01 -0.04 -20.98 16 22 C -0.02 -0.39 2.24 -12.17 -0.03 -0.42 16 23 H 0.13 1.67 6.09 -2.39 -0.01 1.66 16 24 C -0.10 -1.46 5.22 30.77 0.16 -1.30 16 25 C -0.10 -1.15 5.90 30.75 0.18 -0.97 16 26 C -0.04 -0.67 6.30 30.02 0.19 -0.48 16 27 C -0.01 -0.25 6.98 41.62 0.29 0.04 16 28 N -0.52 -14.51 11.25 -187.76 -2.11 -16.63 16 29 C 0.18 4.09 13.05 180.06 2.35 6.44 16 30 N -0.55 -13.04 6.02 -186.32 -1.12 -14.16 16 31 H 0.42 9.36 8.96 -92.70 -0.83 8.53 16 32 C -0.02 -0.45 5.90 41.15 0.24 -0.21 16 33 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.03 1.59 7.07 -2.38 -0.02 1.57 16 35 H 0.00 -0.23 7.91 -2.39 -0.02 -0.25 16 36 H 0.07 2.92 6.39 -2.38 -0.02 2.90 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.06 1.78 7.72 -2.39 -0.02 1.77 16 39 H 0.06 1.93 8.12 -2.38 -0.02 1.91 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.12 1.00 5.54 -2.39 -0.01 0.98 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 46 H 0.08 0.72 8.11 -2.39 -0.02 0.70 16 47 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 50 H 0.24 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -80.25 378.92 1.61 -78.64 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.12 Total: 19.34 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: 7.05 Total: 15.81 kcal Atomic # 7 Polarization: -132.71 SS G_CDS: -7.56 Total: -140.27 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.04 Total: -20.98 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -80.25 1.61 -78.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049715161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.480 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds