Wall clock time and date at job start Wed Apr 1 2020 03:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00451 * 2 1 4 4 H 1.48501 * 109.46971 * 274.98603 * 3 2 1 5 5 H 1.48498 * 109.47274 * 34.97972 * 3 2 1 6 6 H 1.48493 * 109.47348 * 154.98299 * 3 2 1 7 7 C 1.38814 * 119.99206 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99876 * 185.88626 * 7 2 1 9 9 N 1.36938 * 120.00616 * 5.89147 * 7 2 1 10 10 C 1.48382 * 126.55877 * 352.25819 * 9 7 2 11 11 C 1.55468 * 106.97462 * 185.53965 * 10 9 7 12 12 C 1.53430 * 101.67239 * 22.59878 * 11 10 9 13 13 H 1.08994 * 111.14694 * 77.98722 * 12 11 10 14 14 C 1.45024 * 126.56272 * 172.27820 * 9 7 2 15 15 H 1.08997 * 108.26408 * 263.89883 * 14 9 7 16 16 C 1.51086 * 119.18402 * 28.77487 * 14 9 7 17 17 C 1.53868 * 107.33648 * 183.88119 * 16 14 9 18 18 C 1.52717 * 111.53213 * 303.07837 * 17 16 14 19 19 N 1.45723 * 116.37732 * 207.27269 * 12 11 10 20 20 C 1.34781 * 122.22595 * 350.11138 * 19 12 11 21 21 O 1.21276 * 120.00042 * 356.18856 * 20 19 12 22 22 C 1.50707 * 119.99407 * 176.19010 * 20 19 12 23 23 H 1.08992 * 109.47589 * 55.44146 * 22 20 19 24 24 C 1.53124 * 109.47032 * 175.44994 * 22 20 19 25 25 C 1.53350 * 109.52660 * 190.00649 * 24 22 20 26 26 C 1.50861 * 108.41595 * 310.02296 * 25 24 22 27 27 N 1.33576 * 128.03598 * 196.64463 * 26 25 24 28 28 C 1.30759 * 109.14749 * 179.97438 * 27 26 25 29 29 N 1.35308 * 108.76890 * 0.02562 * 28 27 26 30 30 H 0.96997 * 126.50152 * 180.02562 * 29 28 27 31 31 C 1.35028 * 123.98554 * 16.64871 * 26 25 24 32 32 C 1.50653 * 124.45496 * 0.18336 * 31 26 25 33 33 H 0.97000 * 119.99511 * 0.02562 * 1 2 3 34 34 H 1.09001 * 109.96231 * 66.15774 * 10 9 7 35 35 H 1.09004 * 109.98913 * 304.93336 * 10 9 7 36 36 H 1.09004 * 110.98707 * 264.50173 * 11 10 9 37 37 H 1.08996 * 111.01799 * 140.71201 * 11 10 9 38 38 H 1.08998 * 109.88166 * 64.43029 * 16 14 9 39 39 H 1.08992 * 109.94465 * 303.37218 * 16 14 9 40 40 H 1.09006 * 109.07019 * 63.60695 * 17 16 14 41 41 H 1.08997 * 109.06656 * 182.54841 * 17 16 14 42 42 H 1.08995 * 109.16275 * 168.93515 * 18 17 16 43 43 H 1.08999 * 109.15722 * 288.12322 * 18 17 16 44 44 H 1.08999 * 109.46229 * 310.02406 * 24 22 20 45 45 H 1.08995 * 109.46217 * 69.98855 * 24 22 20 46 46 H 1.09001 * 109.67514 * 69.75641 * 25 24 22 47 47 H 1.09001 * 109.67968 * 190.25323 * 25 24 22 48 48 H 1.08005 * 125.61371 * 180.02562 * 28 27 26 49 49 H 1.09001 * 109.67805 * 256.67581 * 32 31 26 50 50 H 1.09006 * 109.68132 * 136.12522 * 32 31 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5045 2.6199 0.8026 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2023 0.0005 8 1 3.0858 -1.2048 0.0965 9 7 1.3308 -2.3851 -0.1207 10 6 -0.1420 -2.5646 -0.1001 11 6 -0.4131 -4.0952 -0.1296 12 6 0.9082 -4.6550 0.4135 13 1 0.9612 -4.5557 1.4976 14 6 1.9132 -3.7020 -0.2933 15 1 1.9208 -3.9352 -1.3580 16 6 3.2851 -3.9811 0.2746 17 6 3.6736 -5.4093 -0.1459 18 6 2.6406 -6.4320 0.3223 19 7 1.2697 -5.9980 -0.0214 20 6 0.4114 -6.7917 -0.6923 21 8 -0.7261 -6.4219 -0.8927 22 6 0.8654 -8.1386 -1.1933 23 1 1.2614 -8.7211 -0.3615 24 6 -0.3221 -8.8786 -1.8152 25 6 0.0715 -10.3336 -2.0975 26 6 1.3798 -10.3362 -2.8487 27 7 1.9252 -11.3350 -3.5481 28 6 3.0656 -10.9357 -4.0480 29 7 3.2797 -9.6531 -3.6740 30 1 4.0471 -9.1058 -3.9028 31 6 2.2135 -9.2762 -2.9162 32 6 1.9595 -7.9484 -2.2515 33 1 -0.4849 0.8401 -0.0004 34 1 -0.5869 -2.0909 -0.9752 35 1 -0.5576 -2.1306 0.8094 36 1 -0.5941 -4.4400 -1.1477 37 1 -1.2458 -4.3573 0.5230 38 1 3.2578 -3.9094 1.3619 39 1 4.0054 -3.2679 -0.1259 40 1 3.7501 -5.4522 -1.2325 41 1 4.6423 -5.6572 0.2880 42 1 2.8432 -7.3900 -0.1564 43 1 2.7182 -6.5497 1.4031 44 1 -1.1651 -8.8578 -1.1245 45 1 -0.6053 -8.3914 -2.7482 46 1 0.1874 -10.8715 -1.1566 47 1 -0.6998 -10.8120 -2.7010 48 1 3.7276 -11.5316 -4.6590 49 1 1.6292 -7.2229 -2.9950 50 1 2.8741 -7.5956 -1.7747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049834222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:57 Heat of formation + Delta-G solvation = 54.683212 kcal Electronic energy + Delta-G solvation = -31688.115004 eV Core-core repulsion = 27716.669607 eV Total energy + Delta-G solvation = -3971.445397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.52732 -40.53811 -38.19679 -36.22879 -35.45010 -33.40305 -32.66118 -32.18972 -30.21955 -29.54624 -28.70539 -28.20354 -25.07954 -24.48813 -23.88018 -22.74161 -21.76674 -21.55569 -20.76880 -19.73121 -19.31378 -18.47374 -18.05096 -16.94554 -16.31263 -15.87914 -15.54506 -15.27429 -14.96473 -14.64574 -14.34715 -14.30072 -14.12359 -13.86790 -13.73317 -13.40152 -13.37153 -13.00260 -12.66663 -12.47541 -12.25015 -12.08327 -11.93031 -11.60096 -11.57758 -11.20731 -11.14093 -11.03445 -10.87317 -10.72895 -10.55948 -10.44834 -10.11209 -10.10075 -10.06522 -9.99756 -9.85873 -9.61815 -9.02988 -8.58269 -8.37519 -8.24063 -6.82542 -5.73000 -3.06475 1.77305 2.64706 2.88248 2.95211 3.12780 3.38659 3.43481 3.46004 4.16057 4.37126 4.47585 4.53420 4.59013 4.71589 4.85607 4.96359 4.99690 5.03707 5.14167 5.19654 5.28657 5.35084 5.38880 5.41858 5.51062 5.55199 5.63500 5.69891 5.74273 5.83423 5.84443 5.92097 5.96781 6.05532 6.09367 6.18291 6.22219 6.25538 6.35096 6.53245 6.54252 6.68553 6.77372 6.87201 7.11683 7.16117 7.57059 7.63852 7.70996 7.82664 7.84415 8.23724 8.40759 9.17672 9.81772 10.50746 11.39882 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.002814 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.338262 B = 9947.824939 C =10577.512284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.127 4.127 12 C 0.115 3.885 13 H 0.079 0.921 14 C 0.160 3.840 15 H 0.017 0.983 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.103 3.897 19 N -0.598 5.598 20 C 0.520 3.480 21 O -0.526 6.526 22 C -0.099 4.099 23 H 0.097 0.903 24 C -0.098 4.098 25 C -0.034 4.034 26 C 0.006 3.994 27 N -0.487 5.487 28 C 0.175 3.825 29 N -0.560 5.560 30 H 0.420 0.580 31 C -0.022 4.022 32 C -0.039 4.039 33 H 0.253 0.747 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.208 0.792 49 H 0.085 0.915 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -21.094 -3.454 22.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.166 4.166 12 C 0.011 3.989 13 H 0.097 0.903 14 C 0.050 3.950 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.168 4.168 18 C -0.019 4.019 19 N -0.331 5.331 20 C 0.308 3.692 21 O -0.402 6.402 22 C -0.121 4.121 23 H 0.116 0.884 24 C -0.136 4.136 25 C -0.072 4.072 26 C -0.124 4.124 27 N -0.206 5.206 28 C -0.108 4.108 29 N -0.163 5.163 30 H 0.258 0.742 31 C -0.139 4.139 32 C -0.077 4.077 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.224 0.776 49 H 0.103 0.897 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.022 -21.463 -3.656 22.877 hybrid contribution 1.566 1.938 -0.092 2.494 sum 8.589 -19.525 -3.749 21.658 Atomic orbital electron populations 1.69963 1.04924 1.25111 1.56362 1.24834 0.95653 0.97632 1.02092 0.86155 0.78650 0.83800 0.77486 1.21659 1.21764 1.20674 1.18973 0.90784 0.82310 1.43640 0.90420 1.44087 1.01802 1.00407 1.85454 1.21730 0.83722 0.88612 1.01135 1.22915 0.94494 0.97354 1.01800 1.22386 0.98673 0.79603 0.98224 0.90322 1.20738 0.91335 0.86927 0.95992 0.96600 1.21423 0.98555 0.94429 1.01032 1.21909 0.97786 0.95740 1.01390 1.21864 0.81627 0.97813 1.00633 1.47999 1.13061 1.16004 1.56036 1.20318 0.85249 0.85659 0.78007 1.90716 1.18779 1.73662 1.57004 1.21315 0.97242 0.94907 0.98592 0.88443 1.21432 0.96576 0.93521 1.02090 1.19981 0.91687 0.96826 0.98726 1.20576 0.98632 0.89888 1.03269 1.69982 1.07386 1.30354 1.12832 1.25028 0.97539 0.83820 1.04386 1.42941 1.19293 1.13718 1.40348 0.74214 1.20876 0.91095 0.98926 1.02968 1.20196 0.98892 0.91600 0.97057 0.93693 0.93773 0.93315 0.90326 0.91998 0.91793 0.91463 0.91971 0.90982 0.89966 0.91479 0.89842 0.90810 0.90590 0.90078 0.77599 0.89651 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.99 10.52 55.49 0.58 -26.40 16 2 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 3 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.23 -6.22 9.95 -15.06 -0.15 -6.37 16 8 H 0.08 2.02 7.28 -52.49 -0.38 1.64 16 9 N -0.59 -14.88 3.35 -163.28 -0.55 -15.43 16 10 C 0.17 4.29 5.45 -1.69 -0.01 4.29 16 11 C -0.13 -2.64 4.96 -25.20 -0.12 -2.76 16 12 C 0.12 2.10 3.32 -66.80 -0.22 1.88 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C 0.16 3.18 2.57 -68.36 -0.18 3.01 16 15 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 16 C -0.12 -1.86 5.42 -27.24 -0.15 -2.01 16 17 C -0.13 -1.45 5.88 -26.42 -0.16 -1.61 16 18 C 0.10 1.09 5.62 -3.45 -0.02 1.07 16 19 N -0.60 -8.57 2.91 -164.00 -0.48 -9.05 16 20 C 0.52 7.51 6.95 -10.98 -0.08 7.43 16 21 O -0.53 -9.49 12.81 5.56 0.07 -9.42 16 22 C -0.10 -1.04 1.67 -91.50 -0.15 -1.19 16 23 H 0.10 0.89 7.62 -51.93 -0.40 0.49 16 24 C -0.10 -1.05 4.60 -26.49 -0.12 -1.17 16 25 C -0.03 -0.34 6.30 -27.62 -0.17 -0.51 16 26 C 0.01 0.07 6.98 -82.90 -0.58 -0.51 16 27 N -0.49 -5.73 11.25 -10.74 -0.12 -5.85 16 28 C 0.17 1.44 13.05 -89.92 -1.17 0.27 16 29 N -0.56 -4.13 6.15 -10.28 -0.06 -4.19 16 30 H 0.42 1.74 8.96 -40.82 -0.37 1.37 16 31 C -0.02 -0.22 7.08 -81.85 -0.58 -0.80 16 32 C -0.04 -0.37 5.18 -27.70 -0.14 -0.51 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.04 1.22 7.59 -51.93 -0.39 0.82 16 35 H 0.05 1.32 7.48 -51.93 -0.39 0.93 16 36 H 0.08 1.70 6.33 -51.93 -0.33 1.38 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 39 H 0.07 1.14 7.72 -51.93 -0.40 0.74 16 40 H 0.06 0.68 8.06 -51.93 -0.42 0.27 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.66 4.31 -51.93 -0.22 0.44 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 45 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.21 0.85 8.06 -52.48 -0.42 0.43 16 49 H 0.09 0.92 8.11 -51.93 -0.42 0.49 16 50 H 0.09 0.68 5.48 -51.93 -0.28 0.40 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -34.43 374.64 -11.80 -46.23 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.77 Total: 1.35 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -4.10 Total: 0.26 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.62 Total: -60.92 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.07 Total: -9.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.43 -11.80 -46.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049834222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.908 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds