Wall clock time and date at job start Wed Apr 1 2020 03:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00451 * 2 1 4 4 H 1.48501 * 109.46971 * 274.98603 * 3 2 1 5 5 H 1.48498 * 109.47274 * 34.97972 * 3 2 1 6 6 H 1.48493 * 109.47348 * 154.98299 * 3 2 1 7 7 C 1.38814 * 119.99206 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99876 * 185.88626 * 7 2 1 9 9 N 1.36938 * 120.00616 * 5.89147 * 7 2 1 10 10 C 1.48382 * 126.55877 * 352.25819 * 9 7 2 11 11 C 1.55468 * 106.97462 * 185.53965 * 10 9 7 12 12 C 1.53430 * 101.67239 * 22.59878 * 11 10 9 13 13 H 1.08994 * 111.14694 * 77.98722 * 12 11 10 14 14 C 1.45024 * 126.56272 * 172.27820 * 9 7 2 15 15 H 1.08997 * 108.26408 * 263.89883 * 14 9 7 16 16 C 1.51086 * 119.18402 * 28.77487 * 14 9 7 17 17 C 1.53868 * 107.33648 * 183.88119 * 16 14 9 18 18 C 1.52717 * 111.53213 * 303.07837 * 17 16 14 19 19 N 1.45723 * 116.37732 * 207.27269 * 12 11 10 20 20 C 1.34781 * 122.22595 * 350.11138 * 19 12 11 21 21 O 1.21276 * 120.00042 * 356.18856 * 20 19 12 22 22 C 1.50707 * 119.99407 * 176.19010 * 20 19 12 23 23 H 1.08992 * 109.47589 * 55.44146 * 22 20 19 24 24 C 1.53124 * 109.47032 * 175.44994 * 22 20 19 25 25 C 1.53350 * 109.52660 * 190.00649 * 24 22 20 26 26 C 1.50861 * 108.41595 * 310.02296 * 25 24 22 27 27 N 1.33576 * 128.03598 * 196.64463 * 26 25 24 28 28 C 1.30759 * 109.14749 * 179.97438 * 27 26 25 29 29 N 1.35308 * 108.76890 * 0.02562 * 28 27 26 30 30 H 0.96997 * 126.50152 * 180.02562 * 29 28 27 31 31 C 1.35028 * 123.98554 * 16.64871 * 26 25 24 32 32 C 1.50653 * 124.45496 * 0.18336 * 31 26 25 33 33 H 0.97000 * 119.99511 * 0.02562 * 1 2 3 34 34 H 1.09001 * 109.96231 * 66.15774 * 10 9 7 35 35 H 1.09004 * 109.98913 * 304.93336 * 10 9 7 36 36 H 1.09004 * 110.98707 * 264.50173 * 11 10 9 37 37 H 1.08996 * 111.01799 * 140.71201 * 11 10 9 38 38 H 1.08998 * 109.88166 * 64.43029 * 16 14 9 39 39 H 1.08992 * 109.94465 * 303.37218 * 16 14 9 40 40 H 1.09006 * 109.07019 * 63.60695 * 17 16 14 41 41 H 1.08997 * 109.06656 * 182.54841 * 17 16 14 42 42 H 1.08995 * 109.16275 * 168.93515 * 18 17 16 43 43 H 1.08999 * 109.15722 * 288.12322 * 18 17 16 44 44 H 1.08999 * 109.46229 * 310.02406 * 24 22 20 45 45 H 1.08995 * 109.46217 * 69.98855 * 24 22 20 46 46 H 1.09001 * 109.67514 * 69.75641 * 25 24 22 47 47 H 1.09001 * 109.67968 * 190.25323 * 25 24 22 48 48 H 1.08005 * 125.61371 * 180.02562 * 28 27 26 49 49 H 1.09001 * 109.67805 * 256.67581 * 32 31 26 50 50 H 1.09006 * 109.68132 * 136.12522 * 32 31 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5045 2.6199 0.8026 6 1 3.5965 1.4119 0.5920 7 6 2.0101 -1.2023 0.0005 8 1 3.0858 -1.2048 0.0965 9 7 1.3308 -2.3851 -0.1207 10 6 -0.1420 -2.5646 -0.1001 11 6 -0.4131 -4.0952 -0.1296 12 6 0.9082 -4.6550 0.4135 13 1 0.9612 -4.5557 1.4976 14 6 1.9132 -3.7020 -0.2933 15 1 1.9208 -3.9352 -1.3580 16 6 3.2851 -3.9811 0.2746 17 6 3.6736 -5.4093 -0.1459 18 6 2.6406 -6.4320 0.3223 19 7 1.2697 -5.9980 -0.0214 20 6 0.4114 -6.7917 -0.6923 21 8 -0.7261 -6.4219 -0.8927 22 6 0.8654 -8.1386 -1.1933 23 1 1.2614 -8.7211 -0.3615 24 6 -0.3221 -8.8786 -1.8152 25 6 0.0715 -10.3336 -2.0975 26 6 1.3798 -10.3362 -2.8487 27 7 1.9252 -11.3350 -3.5481 28 6 3.0656 -10.9357 -4.0480 29 7 3.2797 -9.6531 -3.6740 30 1 4.0471 -9.1058 -3.9028 31 6 2.2135 -9.2762 -2.9162 32 6 1.9595 -7.9484 -2.2515 33 1 -0.4849 0.8401 -0.0004 34 1 -0.5869 -2.0909 -0.9752 35 1 -0.5576 -2.1306 0.8094 36 1 -0.5941 -4.4400 -1.1477 37 1 -1.2458 -4.3573 0.5230 38 1 3.2578 -3.9094 1.3619 39 1 4.0054 -3.2679 -0.1259 40 1 3.7501 -5.4522 -1.2325 41 1 4.6423 -5.6572 0.2880 42 1 2.8432 -7.3900 -0.1564 43 1 2.7182 -6.5497 1.4031 44 1 -1.1651 -8.8578 -1.1245 45 1 -0.6053 -8.3914 -2.7482 46 1 0.1874 -10.8715 -1.1566 47 1 -0.6998 -10.8120 -2.7010 48 1 3.7276 -11.5316 -4.6590 49 1 1.6292 -7.2229 -2.9950 50 1 2.8741 -7.5956 -1.7747 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049834222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:56 Heat of formation + Delta-G solvation = 33.336165 kcal Electronic energy + Delta-G solvation = -31689.040682 eV Core-core repulsion = 27716.669607 eV Total energy + Delta-G solvation = -3972.371075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.20972 -41.77895 -39.56514 -37.21923 -36.87526 -34.34793 -34.06418 -33.74925 -31.33402 -30.63242 -30.01074 -29.58231 -26.50057 -26.17492 -24.71982 -23.77078 -22.83539 -22.46291 -22.20762 -21.41553 -20.26940 -19.47497 -18.76487 -18.55709 -17.54680 -17.23118 -16.71318 -16.55566 -16.19649 -15.86901 -15.62644 -15.40863 -15.26490 -14.99846 -14.76725 -14.72136 -14.32298 -14.17660 -14.05300 -13.74757 -13.54337 -13.37011 -13.15052 -12.92442 -12.86266 -12.73506 -12.51946 -12.17566 -12.08747 -12.00981 -11.95561 -11.85232 -11.75918 -11.68615 -11.52151 -11.40879 -10.82631 -10.75874 -10.73889 -10.31447 -9.51942 -9.07569 -8.88853 -7.86085 -5.21774 1.11530 1.45014 1.47302 1.56017 1.61653 1.96303 2.18604 2.30515 2.50100 3.28669 3.33907 3.46825 3.61537 3.76573 3.81135 3.89259 3.97752 4.03360 4.09984 4.15688 4.25543 4.26009 4.33142 4.35864 4.46743 4.52191 4.57379 4.60533 4.60835 4.69969 4.77885 4.83377 4.89676 4.97297 5.04196 5.09315 5.12084 5.15462 5.19555 5.30571 5.32220 5.36987 5.45599 5.49597 5.60775 5.63341 5.72559 5.82689 6.18159 6.55572 6.62903 7.04922 7.18663 7.24914 7.75651 8.46532 9.26857 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.002814 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.338262 B = 9947.824939 C =10577.512284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.291 1.291 5 H -0.298 1.298 6 H -0.261 1.261 7 C -0.232 4.232 8 H 0.090 0.910 9 N -0.613 5.613 10 C 0.183 3.817 11 C -0.110 4.110 12 C 0.132 3.868 13 H 0.079 0.921 14 C 0.154 3.846 15 H 0.001 0.999 16 C -0.112 4.112 17 C -0.120 4.120 18 C 0.098 3.902 19 N -0.597 5.597 20 C 0.517 3.483 21 O -0.570 6.570 22 C -0.086 4.086 23 H 0.125 0.875 24 C -0.092 4.092 25 C -0.028 4.028 26 C -0.019 4.019 27 N -0.531 5.531 28 C 0.187 3.813 29 N -0.548 5.548 30 H 0.437 0.563 31 C -0.026 4.026 32 C -0.031 4.031 33 H 0.246 0.754 34 H 0.002 0.998 35 H 0.016 0.984 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.245 0.755 49 H 0.069 0.931 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.957 -23.586 -3.255 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.805 3.195 4 H -0.218 1.218 5 H -0.225 1.225 6 H -0.186 1.186 7 C -0.361 4.361 8 H 0.108 0.892 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.149 4.149 12 C 0.026 3.974 13 H 0.096 0.904 14 C 0.046 3.954 15 H 0.019 0.981 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.023 4.023 19 N -0.329 5.329 20 C 0.306 3.694 21 O -0.449 6.449 22 C -0.108 4.108 23 H 0.143 0.857 24 C -0.131 4.131 25 C -0.066 4.066 26 C -0.148 4.148 27 N -0.251 5.251 28 C -0.097 4.097 29 N -0.152 5.152 30 H 0.278 0.722 31 C -0.144 4.144 32 C -0.069 4.069 33 H 0.055 0.945 34 H 0.021 0.979 35 H 0.035 0.965 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.094 0.906 48 H 0.261 0.739 49 H 0.088 0.912 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.968 -23.994 -3.457 26.607 hybrid contribution 0.356 2.655 -0.225 2.688 sum 11.324 -21.339 -3.683 24.437 Atomic orbital electron populations 1.70194 1.06600 1.25267 1.58237 1.25727 0.96496 1.01236 1.02794 0.85074 0.78067 0.79229 0.77092 1.21780 1.22460 1.18557 1.19418 0.91506 0.83206 1.41951 0.89184 1.44355 1.01990 1.02153 1.85241 1.21411 0.84133 0.91074 0.97589 1.22633 0.96408 0.94368 1.01465 1.21954 0.95902 0.81791 0.97751 0.90358 1.20949 0.94311 0.84666 0.95512 0.98123 1.21410 0.95292 0.97746 1.00635 1.21898 0.99634 0.92213 1.02106 1.22224 0.78822 0.98935 1.02312 1.48073 1.14921 1.14161 1.55767 1.21029 0.84612 0.86709 0.77050 1.90702 1.20881 1.74832 1.58450 1.21258 0.97504 0.92273 0.99723 0.85702 1.21336 0.96649 0.94123 1.00955 1.19907 0.91567 0.95937 0.99201 1.20781 0.99241 0.90674 1.04151 1.69958 1.09240 1.31455 1.14401 1.25774 0.96794 0.84063 1.03043 1.42904 1.19218 1.13691 1.39404 0.72225 1.20773 0.91675 0.98394 1.03527 1.20102 0.99146 0.91275 0.96390 0.94517 0.97924 0.96526 0.91370 0.91887 0.91914 0.92522 0.91355 0.87046 0.86430 0.89648 0.90580 0.92772 0.89461 0.90560 0.73915 0.91243 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 10.52 21.65 0.23 -58.85 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 45.83 29.56 68.60 2.03 47.86 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.23 -12.83 9.95 84.03 0.84 -11.99 16 8 H 0.09 4.64 7.28 -2.91 -0.02 4.62 16 9 N -0.61 -31.75 3.35 -670.50 -2.25 -34.00 16 10 C 0.18 9.74 5.45 86.87 0.47 10.22 16 11 C -0.11 -4.79 4.96 31.59 0.16 -4.63 16 12 C 0.13 4.75 3.32 46.14 0.15 4.90 16 13 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 14 C 0.15 6.11 2.57 45.50 0.12 6.23 16 15 H 0.00 0.06 8.06 -2.39 -0.02 0.04 16 16 C -0.11 -3.35 5.42 30.26 0.16 -3.19 16 17 C -0.12 -2.14 5.88 30.79 0.18 -1.96 16 18 C 0.10 1.61 5.62 86.03 0.48 2.09 16 19 N -0.60 -15.84 2.91 -791.16 -2.30 -18.14 16 20 C 0.52 14.26 6.95 87.66 0.61 14.87 16 21 O -0.57 -20.90 12.81 -3.02 -0.04 -20.94 16 22 C -0.09 -1.61 1.67 -11.36 -0.02 -1.63 16 23 H 0.13 1.73 7.62 -2.39 -0.02 1.71 16 24 C -0.09 -1.92 4.60 30.75 0.14 -1.78 16 25 C -0.03 -0.53 6.30 30.02 0.19 -0.34 16 26 C -0.02 -0.40 6.98 41.61 0.29 -0.11 16 27 N -0.53 -11.36 11.25 -187.89 -2.11 -13.48 16 28 C 0.19 2.44 13.05 180.10 2.35 4.79 16 29 N -0.55 -6.06 6.15 -186.44 -1.15 -7.21 16 30 H 0.44 1.77 8.96 -92.71 -0.83 0.94 16 31 C -0.03 -0.44 7.08 41.14 0.29 -0.15 16 32 C -0.03 -0.49 5.18 29.96 0.16 -0.33 16 33 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 34 H 0.00 0.15 7.59 -2.39 -0.02 0.13 16 35 H 0.02 0.96 7.48 -2.39 -0.02 0.95 16 36 H 0.07 3.11 6.33 -2.39 -0.02 3.10 16 37 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 1.89 8.12 -2.39 -0.02 1.87 16 39 H 0.06 1.81 7.72 -2.39 -0.02 1.79 16 40 H 0.07 1.18 8.06 -2.38 -0.02 1.16 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.12 1.17 4.31 -2.39 -0.01 1.16 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.68 7.84 -2.39 -0.02 1.66 16 45 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 46 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.24 0.96 8.06 -2.91 -0.02 0.93 16 49 H 0.07 1.37 8.11 -2.39 -0.02 1.35 16 50 H 0.11 1.18 5.48 -2.38 -0.01 1.17 16 Total: -1.00 -81.06 374.64 1.58 -79.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.13 Total: 11.81 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: 7.04 Total: 13.45 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -7.58 Total: -131.68 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.04 Total: -20.94 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -81.06 1.58 -79.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049834222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.824 kcal (2) G-P(sol) polarization free energy of solvation -81.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds