Wall clock time and date at job start Wed Apr 1 2020 02:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99839 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00048 * 3 2 1 5 5 H 1.48493 * 109.47347 * 29.99941 * 3 2 1 6 6 H 1.48496 * 109.47153 * 150.00358 * 3 2 1 7 7 C 1.38810 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.47095 * 125.64551 * 179.97438 * 9 7 2 11 11 C 1.55029 * 107.12526 * 180.17712 * 10 9 7 12 12 H 1.08992 * 112.65484 * 216.16813 * 11 10 9 13 13 C 1.52966 * 107.08337 * 92.70001 * 11 10 9 14 14 C 1.52726 * 110.87681 * 194.29455 * 13 11 10 15 15 C 1.53478 * 108.39580 * 63.84392 * 14 13 11 16 16 N 1.46793 * 107.54223 * 301.73716 * 15 14 13 17 17 C 1.34774 * 119.52309 * 232.00192 * 16 15 14 18 18 O 1.21269 * 120.00118 * 174.57993 * 17 16 15 19 19 C 1.50704 * 119.99666 * 354.57741 * 17 16 15 20 20 H 1.09003 * 109.72328 * 334.14235 * 19 17 16 21 21 C 1.53442 * 109.72275 * 94.76899 * 19 17 16 22 22 C 1.53147 * 109.18836 * 168.26428 * 21 19 17 23 23 C 1.53234 * 109.57137 * 290.57206 * 22 21 19 24 24 N 1.46593 * 108.80445 * 50.53882 * 23 22 21 25 25 N 1.39647 * 127.54603 * 162.72338 * 24 23 22 26 26 C 1.31038 * 108.12549 * 180.09708 * 25 24 23 27 27 C 1.40059 * 108.25279 * 359.92016 * 26 25 24 28 28 C 1.34756 * 107.79933 * 0.03566 * 27 26 25 29 29 C 1.45019 * 120.95396 * 51.97902 * 16 15 14 30 30 H 1.08998 * 109.86451 * 192.55585 * 29 16 15 31 31 C 1.47681 * 125.64244 * 0.02562 * 9 7 2 32 32 H 0.97001 * 119.99806 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.90662 * 60.81077 * 10 9 7 34 34 H 1.09000 * 110.06161 * 299.63629 * 10 9 7 35 35 H 1.08998 * 109.19682 * 314.65278 * 13 11 10 36 36 H 1.08996 * 109.19450 * 73.94015 * 13 11 10 37 37 H 1.09003 * 109.67820 * 183.57061 * 14 13 11 38 38 H 1.09000 * 109.68558 * 304.07555 * 14 13 11 39 39 H 1.09001 * 109.84309 * 61.25129 * 15 14 13 40 40 H 1.09000 * 109.84200 * 182.15524 * 15 14 13 41 41 H 1.09002 * 109.51660 * 288.17694 * 21 19 17 42 42 H 1.08995 * 109.52011 * 48.34527 * 21 19 17 43 43 H 1.09009 * 109.45468 * 50.60056 * 22 21 19 44 44 H 1.09000 * 109.45694 * 170.55811 * 22 21 19 45 45 H 1.08996 * 109.58400 * 170.33763 * 23 22 21 46 46 H 1.09002 * 109.58244 * 290.60521 * 23 22 21 47 47 H 1.07994 * 125.87294 * 179.97438 * 26 25 24 48 48 H 1.07999 * 126.09798 * 180.02562 * 27 26 25 49 49 H 1.08996 * 110.44729 * 84.73302 * 31 9 7 50 50 H 1.08989 * 110.45370 * 322.18285 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9322 -3.7281 -0.0016 11 6 0.7708 -4.7550 -0.0057 12 1 0.9929 -5.6424 0.5868 13 6 0.4828 -5.1017 -1.4675 14 6 -0.8565 -5.8233 -1.6020 15 6 -1.9704 -4.8628 -1.1632 16 7 -1.6884 -4.4608 0.2202 17 6 -2.6499 -4.5836 1.1566 18 8 -2.3978 -4.3477 2.3191 19 6 -4.0383 -5.0141 0.7589 20 1 -4.2227 -4.7463 -0.2815 21 6 -4.1806 -6.5316 0.9360 22 6 -5.6580 -6.9162 0.8150 23 6 -6.4271 -6.3883 2.0307 24 7 -6.1142 -4.9670 2.2071 25 7 -6.8227 -4.0264 2.9577 26 6 -6.2098 -2.8733 2.8496 27 6 -5.0898 -3.0472 2.0268 28 6 -5.0544 -4.3396 1.6469 29 6 -0.3901 -3.9338 0.5939 30 1 -0.3010 -3.9041 1.6798 31 6 -0.1440 -2.5333 -0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.5413 -3.8605 0.8925 34 1 2.5470 -3.8595 -0.8921 35 1 0.4560 -4.1840 -2.0549 36 1 1.2764 -5.7458 -1.8461 37 1 -1.0127 -6.1168 -2.6400 38 1 -0.8624 -6.7082 -0.9656 39 1 -1.9779 -3.9851 -1.8095 40 1 -2.9352 -5.3674 -1.2137 41 1 -3.6065 -7.0438 0.1638 42 1 -3.8085 -6.8200 1.9191 43 1 -6.0732 -6.4810 -0.0942 44 1 -5.7483 -8.0016 0.7720 45 1 -7.4978 -6.5090 1.8663 46 1 -6.1294 -6.9431 2.9205 47 1 -6.5152 -1.9482 3.3157 48 1 -4.3812 -2.2819 1.7466 49 1 -0.5322 -2.4775 -1.0175 50 1 -0.6024 -1.7680 0.6256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050077582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:51 Heat of formation + Delta-G solvation = 77.460856 kcal Electronic energy + Delta-G solvation = -31975.674634 eV Core-core repulsion = 28005.216949 eV Total energy + Delta-G solvation = -3970.457685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.65572 -40.21147 -38.10125 -36.44747 -35.31056 -33.07880 -32.50659 -31.89008 -30.36687 -29.41492 -28.38522 -27.29606 -25.54188 -25.16144 -23.71366 -22.44958 -22.08293 -21.25012 -20.53967 -19.97575 -18.91524 -18.04445 -17.34520 -16.93603 -16.71477 -15.74952 -15.31558 -14.97010 -14.89680 -14.54085 -14.39795 -14.30525 -14.06927 -13.86379 -13.70216 -13.32318 -13.24753 -12.91869 -12.68758 -12.42181 -12.30411 -12.10611 -12.03834 -11.65718 -11.57852 -11.35973 -11.30314 -11.11248 -11.06419 -10.84830 -10.69403 -10.57194 -10.31359 -10.25413 -9.89607 -9.75307 -9.69215 -9.46944 -9.08942 -8.64157 -8.39735 -8.14648 -6.83524 -5.65083 -3.07061 1.90301 2.42840 2.82677 2.95059 3.28545 3.41155 3.46317 3.48533 4.11260 4.26298 4.39058 4.43841 4.49832 4.68506 4.85398 4.91781 4.96161 5.03338 5.07328 5.11569 5.27073 5.31776 5.33030 5.37834 5.44136 5.47250 5.52768 5.60339 5.66413 5.77090 5.78946 5.88125 5.90659 5.92576 6.04945 6.08793 6.19873 6.26747 6.30878 6.40493 6.62665 6.68346 6.79431 6.89663 6.93202 7.02718 7.41090 7.61959 7.72890 7.80063 7.86579 8.33347 8.45669 9.20821 9.82109 10.45769 11.39017 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.003611 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.996847 B = 7752.249340 C = 9375.487390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.140 3.860 11 C -0.108 4.108 12 H 0.075 0.925 13 C -0.110 4.110 14 C -0.130 4.130 15 C 0.101 3.899 16 N -0.585 5.585 17 C 0.523 3.477 18 O -0.525 6.525 19 C -0.047 4.047 20 H 0.114 0.886 21 C -0.116 4.116 22 C -0.133 4.133 23 C 0.133 3.867 24 N -0.371 5.371 25 N -0.299 5.299 26 C 0.046 3.954 27 C -0.242 4.242 28 C 0.100 3.900 29 C 0.116 3.884 30 H 0.097 0.903 31 C 0.157 3.843 32 H 0.252 0.748 33 H 0.022 0.978 34 H 0.027 0.973 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.183 0.817 48 H 0.149 0.851 49 H 0.015 0.985 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -16.707 -3.227 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.014 3.986 11 C -0.128 4.128 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.168 4.168 15 C -0.022 4.022 16 N -0.316 5.316 17 C 0.308 3.692 18 O -0.401 6.401 19 C -0.070 4.070 20 H 0.131 0.869 21 C -0.154 4.154 22 C -0.171 4.171 23 C 0.012 3.988 24 N -0.156 5.156 25 N -0.120 5.120 26 C -0.139 4.139 27 C -0.271 4.271 28 C -0.026 4.026 29 C 0.012 3.988 30 H 0.115 0.885 31 C 0.031 3.969 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.114 0.886 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.200 0.800 48 H 0.166 0.834 49 H 0.033 0.967 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.239 -17.104 -2.083 21.135 hybrid contribution 1.217 1.357 -0.492 1.888 sum -11.022 -15.747 -2.575 19.393 Atomic orbital electron populations 1.69800 1.04867 1.24848 1.57279 1.24783 0.95704 0.97699 1.02239 0.86085 0.78584 0.83404 0.77492 1.21672 1.21618 1.20688 1.19063 0.90474 0.82292 1.43473 0.90378 1.44423 1.01541 0.99853 1.87000 1.21499 0.93468 0.85616 0.98062 1.22430 0.96705 0.97714 0.95947 0.90654 1.21495 0.95914 1.00730 0.96665 1.21872 0.95761 0.98142 1.01067 1.21911 0.98278 0.98798 0.83174 1.47364 1.13015 1.62809 1.08456 1.19965 0.85540 0.77932 0.85758 1.90725 1.81591 1.49488 1.18259 1.20148 0.91119 0.96109 0.99608 0.86873 1.21645 0.96735 0.92679 1.04301 1.21945 0.95019 1.02357 0.97787 1.21733 1.01303 0.76501 0.99300 1.48542 1.20281 1.08414 1.38319 1.77218 1.20165 0.98270 1.16333 1.23890 0.94634 0.96602 0.98802 1.21141 1.02672 0.96189 1.07094 1.20200 0.90784 0.92978 0.98685 1.22084 0.79666 0.96143 1.00950 0.88512 1.21974 0.84915 0.91489 0.98478 0.93683 0.95961 0.95539 0.90801 0.92310 0.91002 0.91819 0.90569 0.90155 0.89590 0.90276 0.90293 0.88592 0.89087 0.90042 0.79980 0.83356 0.96696 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.10 55.49 0.56 -26.22 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.20 3.40 -169.87 -0.58 -15.78 16 10 C 0.14 2.86 6.61 -2.65 -0.02 2.85 16 11 C -0.11 -1.83 3.60 -88.87 -0.32 -2.15 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 13 C -0.11 -1.56 4.65 -26.89 -0.13 -1.69 16 14 C -0.13 -1.42 6.11 -26.62 -0.16 -1.58 16 15 C 0.10 1.21 5.86 -3.63 -0.02 1.19 16 16 N -0.58 -9.27 2.74 -165.20 -0.45 -9.72 16 17 C 0.52 8.54 6.39 -10.98 -0.07 8.47 16 18 O -0.53 -10.91 15.42 5.57 0.09 -10.82 16 19 C -0.05 -0.57 2.04 -92.61 -0.19 -0.76 16 20 H 0.11 1.16 6.21 -51.93 -0.32 0.84 16 21 C -0.12 -1.03 5.21 -26.43 -0.14 -1.17 16 22 C -0.13 -0.87 5.93 -26.53 -0.16 -1.03 16 23 C 0.13 1.19 7.28 -3.87 -0.03 1.17 16 24 N -0.37 -5.06 4.04 -56.95 -0.23 -5.29 16 25 N -0.30 -4.57 12.62 30.70 0.39 -4.18 16 26 C 0.05 0.68 12.03 -17.21 -0.21 0.47 16 27 C -0.24 -3.88 9.96 -40.13 -0.40 -4.28 16 28 C 0.10 1.47 5.74 -82.22 -0.47 1.00 16 29 C 0.12 2.26 3.06 -67.45 -0.21 2.05 16 30 H 0.10 2.16 6.92 -51.93 -0.36 1.80 16 31 C 0.16 3.76 5.05 -2.81 -0.01 3.74 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.53 7.75 -51.93 -0.40 0.13 16 35 H 0.07 1.24 7.21 -51.93 -0.37 0.86 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 1.00 7.60 -51.93 -0.39 0.60 16 40 H 0.08 0.69 5.17 -51.93 -0.27 0.42 16 41 H 0.09 0.58 7.77 -51.93 -0.40 0.18 16 42 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 43 H 0.08 0.48 8.12 -51.92 -0.42 0.06 16 44 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.18 2.09 8.06 -52.49 -0.42 1.66 16 48 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 49 H 0.02 0.37 6.92 -51.93 -0.36 0.02 16 50 H 0.11 2.98 5.94 -51.93 -0.31 2.68 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -34.78 379.53 -10.12 -44.90 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.81 Total: 2.76 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.78 Total: 1.54 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: -0.31 Total: -61.19 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.78 -10.12 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050077582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.362 kcal (2) G-P(sol) polarization free energy of solvation -34.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds