Wall clock time and date at job start Wed Apr 1 2020 02:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99839 * 2 1 4 4 H 1.48500 * 109.46968 * 270.00048 * 3 2 1 5 5 H 1.48493 * 109.47347 * 29.99941 * 3 2 1 6 6 H 1.48496 * 109.47153 * 150.00358 * 3 2 1 7 7 C 1.38810 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00172 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99858 * 359.97438 * 7 2 1 10 10 C 1.47095 * 125.64551 * 179.97438 * 9 7 2 11 11 C 1.55029 * 107.12526 * 180.17712 * 10 9 7 12 12 H 1.08992 * 112.65484 * 216.16813 * 11 10 9 13 13 C 1.52966 * 107.08337 * 92.70001 * 11 10 9 14 14 C 1.52726 * 110.87681 * 194.29455 * 13 11 10 15 15 C 1.53478 * 108.39580 * 63.84392 * 14 13 11 16 16 N 1.46793 * 107.54223 * 301.73716 * 15 14 13 17 17 C 1.34774 * 119.52309 * 232.00192 * 16 15 14 18 18 O 1.21269 * 120.00118 * 174.57993 * 17 16 15 19 19 C 1.50704 * 119.99666 * 354.57741 * 17 16 15 20 20 H 1.09003 * 109.72328 * 334.14235 * 19 17 16 21 21 C 1.53442 * 109.72275 * 94.76899 * 19 17 16 22 22 C 1.53147 * 109.18836 * 168.26428 * 21 19 17 23 23 C 1.53234 * 109.57137 * 290.57206 * 22 21 19 24 24 N 1.46593 * 108.80445 * 50.53882 * 23 22 21 25 25 N 1.39647 * 127.54603 * 162.72338 * 24 23 22 26 26 C 1.31038 * 108.12549 * 180.09708 * 25 24 23 27 27 C 1.40059 * 108.25279 * 359.92016 * 26 25 24 28 28 C 1.34756 * 107.79933 * 0.03566 * 27 26 25 29 29 C 1.45019 * 120.95396 * 51.97902 * 16 15 14 30 30 H 1.08998 * 109.86451 * 192.55585 * 29 16 15 31 31 C 1.47681 * 125.64244 * 0.02562 * 9 7 2 32 32 H 0.97001 * 119.99806 * 359.97438 * 1 2 3 33 33 H 1.08994 * 109.90662 * 60.81077 * 10 9 7 34 34 H 1.09000 * 110.06161 * 299.63629 * 10 9 7 35 35 H 1.08998 * 109.19682 * 314.65278 * 13 11 10 36 36 H 1.08996 * 109.19450 * 73.94015 * 13 11 10 37 37 H 1.09003 * 109.67820 * 183.57061 * 14 13 11 38 38 H 1.09000 * 109.68558 * 304.07555 * 14 13 11 39 39 H 1.09001 * 109.84309 * 61.25129 * 15 14 13 40 40 H 1.09000 * 109.84200 * 182.15524 * 15 14 13 41 41 H 1.09002 * 109.51660 * 288.17694 * 21 19 17 42 42 H 1.08995 * 109.52011 * 48.34527 * 21 19 17 43 43 H 1.09009 * 109.45468 * 50.60056 * 22 21 19 44 44 H 1.09000 * 109.45694 * 170.55811 * 22 21 19 45 45 H 1.08996 * 109.58400 * 170.33763 * 23 22 21 46 46 H 1.09002 * 109.58244 * 290.60521 * 23 22 21 47 47 H 1.07994 * 125.87294 * 179.97438 * 26 25 24 48 48 H 1.07999 * 126.09798 * 180.02562 * 27 26 25 49 49 H 1.08996 * 110.44729 * 84.73302 * 31 9 7 50 50 H 1.08989 * 110.45370 * 322.18285 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9322 -3.7281 -0.0016 11 6 0.7708 -4.7550 -0.0057 12 1 0.9929 -5.6424 0.5868 13 6 0.4828 -5.1017 -1.4675 14 6 -0.8565 -5.8233 -1.6020 15 6 -1.9704 -4.8628 -1.1632 16 7 -1.6884 -4.4608 0.2202 17 6 -2.6499 -4.5836 1.1566 18 8 -2.3978 -4.3477 2.3191 19 6 -4.0383 -5.0141 0.7589 20 1 -4.2227 -4.7463 -0.2815 21 6 -4.1806 -6.5316 0.9360 22 6 -5.6580 -6.9162 0.8150 23 6 -6.4271 -6.3883 2.0307 24 7 -6.1142 -4.9670 2.2071 25 7 -6.8227 -4.0264 2.9577 26 6 -6.2098 -2.8733 2.8496 27 6 -5.0898 -3.0472 2.0268 28 6 -5.0544 -4.3396 1.6469 29 6 -0.3901 -3.9338 0.5939 30 1 -0.3010 -3.9041 1.6798 31 6 -0.1440 -2.5333 -0.0005 32 1 -0.4850 0.8401 0.0004 33 1 2.5413 -3.8605 0.8925 34 1 2.5470 -3.8595 -0.8921 35 1 0.4560 -4.1840 -2.0549 36 1 1.2764 -5.7458 -1.8461 37 1 -1.0127 -6.1168 -2.6400 38 1 -0.8624 -6.7082 -0.9656 39 1 -1.9779 -3.9851 -1.8095 40 1 -2.9352 -5.3674 -1.2137 41 1 -3.6065 -7.0438 0.1638 42 1 -3.8085 -6.8200 1.9191 43 1 -6.0732 -6.4810 -0.0942 44 1 -5.7483 -8.0016 0.7720 45 1 -7.4978 -6.5090 1.8663 46 1 -6.1294 -6.9431 2.9205 47 1 -6.5152 -1.9482 3.3157 48 1 -4.3812 -2.2819 1.7466 49 1 -0.5322 -2.4775 -1.0175 50 1 -0.6024 -1.7680 0.6256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050077582.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:50 Heat of formation + Delta-G solvation = 54.641503 kcal Electronic energy + Delta-G solvation = -31976.664155 eV Core-core repulsion = 28005.216949 eV Total energy + Delta-G solvation = -3971.447206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.73686 -41.53834 -39.53546 -37.33206 -36.83532 -34.62764 -33.59160 -33.42770 -31.30798 -31.14200 -29.57701 -28.77323 -27.18609 -26.24708 -25.15666 -23.33783 -23.24343 -22.47797 -22.01767 -21.42244 -19.90163 -19.31237 -18.92401 -18.52302 -17.84744 -17.00966 -16.79489 -16.32912 -16.02881 -15.95867 -15.52526 -15.41602 -15.23359 -15.05046 -14.81122 -14.57100 -14.45364 -14.36640 -14.06051 -13.77138 -13.51884 -13.44150 -13.24963 -13.09619 -12.94137 -12.77210 -12.55614 -12.29568 -12.14285 -12.09882 -12.04807 -11.99003 -11.76405 -11.66869 -11.58404 -11.45137 -11.14411 -10.78337 -10.74197 -10.17008 -9.57792 -9.52053 -8.88796 -7.79264 -5.24148 0.78090 1.38912 1.44203 1.46673 1.55259 1.67775 1.76933 2.05327 2.48486 3.21635 3.31367 3.45451 3.50951 3.64433 3.69406 3.74197 3.91130 3.97413 4.01815 4.06717 4.08373 4.15589 4.24554 4.33392 4.45965 4.52332 4.56152 4.61068 4.64514 4.70516 4.73216 4.80576 4.86394 4.88492 4.94309 4.95051 4.99792 5.13496 5.14758 5.19711 5.22317 5.31717 5.40916 5.49264 5.56952 5.64395 5.64999 5.81110 6.03941 6.24953 6.45953 6.68096 7.06195 7.17106 7.75022 8.38482 9.22379 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013130 B = 0.003611 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.996847 B = 7752.249340 C = 9375.487390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.083 0.917 9 N -0.624 5.624 10 C 0.132 3.868 11 C -0.092 4.092 12 H 0.101 0.899 13 C -0.108 4.108 14 C -0.119 4.119 15 C 0.092 3.908 16 N -0.584 5.584 17 C 0.518 3.482 18 O -0.581 6.581 19 C -0.039 4.039 20 H 0.141 0.859 21 C -0.112 4.112 22 C -0.121 4.121 23 C 0.115 3.885 24 N -0.366 5.366 25 N -0.319 5.319 26 C 0.039 3.961 27 C -0.282 4.282 28 C 0.099 3.901 29 C 0.130 3.870 30 H 0.059 0.941 31 C 0.172 3.828 32 H 0.245 0.755 33 H 0.018 0.982 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.136 0.864 45 H 0.109 0.891 46 H 0.086 0.914 47 H 0.203 0.797 48 H 0.123 0.877 49 H 0.000 1.000 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -20.592 -5.408 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.351 5.351 10 C 0.007 3.993 11 C -0.112 4.112 12 H 0.119 0.881 13 C -0.146 4.146 14 C -0.157 4.157 15 C -0.029 4.029 16 N -0.314 5.314 17 C 0.306 3.694 18 O -0.460 6.460 19 C -0.062 4.062 20 H 0.158 0.842 21 C -0.150 4.150 22 C -0.159 4.159 23 C -0.004 4.004 24 N -0.151 5.151 25 N -0.141 5.141 26 C -0.145 4.145 27 C -0.311 4.311 28 C -0.029 4.029 29 C 0.024 3.976 30 H 0.077 0.923 31 C 0.046 3.954 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.154 0.846 45 H 0.128 0.872 46 H 0.104 0.896 47 H 0.220 0.780 48 H 0.141 0.859 49 H 0.018 0.982 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.874 -21.049 -4.299 25.045 hybrid contribution 1.451 2.573 0.231 2.963 sum -11.424 -18.476 -4.068 22.100 Atomic orbital electron populations 1.70100 1.06301 1.24917 1.58432 1.25644 0.96563 1.01043 1.02586 0.85060 0.77571 0.79017 0.77588 1.20911 1.22300 1.19419 1.19466 0.91047 0.83643 1.42769 0.89893 1.44708 1.02322 1.01150 1.86933 1.21734 0.94962 0.84477 0.98127 1.22406 0.93336 0.96912 0.98510 0.88128 1.21472 0.99266 1.00310 0.93503 1.21874 0.92474 0.97633 1.03728 1.22304 1.01348 0.99086 0.80178 1.47433 1.11515 1.62089 1.10348 1.20761 0.86961 0.76677 0.84974 1.90699 1.82643 1.51888 1.20788 1.20280 0.87122 0.98682 1.00112 0.84163 1.21754 0.99167 0.89528 1.04574 1.22004 0.92453 1.04685 0.96721 1.22292 1.03152 0.73864 1.01123 1.48960 1.19430 1.09747 1.36920 1.77141 1.21058 0.98707 1.17210 1.24215 0.94174 0.97525 0.98583 1.21171 1.03471 0.97051 1.09406 1.20500 0.91328 0.92657 0.98451 1.21479 0.82999 0.94543 0.98551 0.92270 1.21551 0.84271 0.93028 0.96590 0.94511 0.96386 0.94394 0.93953 0.89767 0.87375 0.89716 0.92194 0.85663 0.86020 0.92185 0.88942 0.84558 0.87243 0.89556 0.78035 0.85879 0.98213 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 10.10 21.65 0.22 -58.35 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.98 46.92 29.55 68.60 2.03 48.95 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.24 -13.82 10.28 84.03 0.86 -12.95 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 N -0.62 -32.96 3.40 -691.34 -2.35 -35.31 16 10 C 0.13 5.46 6.61 86.96 0.57 6.04 16 11 C -0.09 -3.03 3.60 -9.66 -0.03 -3.06 16 12 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 13 C -0.11 -2.76 4.65 30.49 0.14 -2.62 16 14 C -0.12 -2.02 6.11 30.66 0.19 -1.84 16 15 C 0.09 1.92 5.86 86.48 0.51 2.43 16 16 N -0.58 -18.30 2.74 -794.98 -2.18 -20.48 16 17 C 0.52 17.06 6.39 87.66 0.56 17.62 16 18 O -0.58 -25.54 15.42 -2.99 -0.05 -25.58 16 19 C -0.04 -0.89 2.04 -12.08 -0.02 -0.92 16 20 H 0.14 2.39 6.21 -2.39 -0.01 2.37 16 21 C -0.11 -1.53 5.21 30.79 0.16 -1.37 16 22 C -0.12 -0.96 5.93 30.72 0.18 -0.78 16 23 C 0.11 1.72 7.28 86.44 0.63 2.35 16 24 N -0.37 -9.61 4.04 -334.10 -1.35 -10.96 16 25 N -0.32 -9.80 12.62 -56.80 -0.72 -10.52 16 26 C 0.04 1.21 12.03 85.25 1.03 2.24 16 27 C -0.28 -9.65 9.96 21.91 0.22 -9.43 16 28 C 0.10 2.90 5.74 41.28 0.24 3.13 16 29 C 0.13 5.25 3.06 46.10 0.14 5.40 16 30 H 0.06 2.83 6.92 -2.39 -0.02 2.81 16 31 C 0.17 8.75 5.05 86.53 0.44 9.19 16 32 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.04 1.49 7.75 -2.39 -0.02 1.47 16 35 H 0.04 1.36 7.21 -2.39 -0.02 1.35 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.06 1.49 7.60 -2.39 -0.02 1.47 16 40 H 0.13 1.49 5.17 -2.39 -0.01 1.48 16 41 H 0.12 0.84 7.77 -2.39 -0.02 0.83 16 42 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 43 H 0.09 0.58 8.12 -2.38 -0.02 0.57 16 44 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.20 4.93 8.06 -2.91 -0.02 4.91 16 48 H 0.12 4.72 8.06 -2.91 -0.02 4.69 16 49 H 0.00 0.00 6.92 -2.39 -0.02 -0.02 16 50 H 0.05 3.31 5.94 -2.39 -0.01 3.29 16 Total: -1.00 -85.59 379.53 2.82 -82.77 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.94 Total: 17.42 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 6.27 Total: 12.07 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -6.37 Total: -135.62 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -85.59 2.82 -82.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050077582.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.410 kcal (2) G-P(sol) polarization free energy of solvation -85.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds