Wall clock time and date at job start Wed Apr 1 2020 02:59:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86799 * 120.00220 * 2 1
4 4 H 1.48502 * 109.47497 * 179.97438 * 3 2 1
5 5 H 1.48505 * 109.46662 * 299.99416 * 3 2 1
6 6 H 1.48497 * 109.47349 * 59.99343 * 3 2 1
7 7 C 1.38817 * 120.00031 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00104 * 180.02562 * 7 2 1
9 9 N 1.36938 * 120.00001 * 0.02562 * 7 2 1
10 10 C 1.46919 * 125.37603 * 180.02562 * 9 7 2
11 11 C 1.54187 * 106.26489 * 162.17211 * 10 9 7
12 12 H 1.09003 * 109.27712 * 271.45327 * 11 10 9
13 13 C 1.50701 * 110.51044 * 151.09431 * 11 10 9
14 14 C 1.51332 * 113.54678 * 289.39108 * 13 11 10
15 15 C 1.51629 * 111.97987 * 304.61277 * 14 13 11
16 16 N 1.44497 * 112.65312 * 42.75753 * 15 14 13
17 17 C 1.34775 * 116.63155 * 154.60383 * 16 15 14
18 18 O 1.21283 * 120.00145 * 182.97789 * 17 16 15
19 19 C 1.50706 * 120.00111 * 2.97911 * 17 16 15
20 20 H 1.09004 * 109.67286 * 25.29554 * 19 17 16
21 21 C 1.53397 * 109.68518 * 145.81140 * 19 17 16
22 22 C 1.53111 * 109.44627 * 169.40883 * 21 19 17
23 23 C 1.53354 * 109.53801 * 289.99818 * 22 21 19
24 24 C 1.50864 * 108.44123 * 49.96892 * 23 22 21
25 25 N 1.33517 * 128.07718 * 163.21057 * 24 23 22
26 26 C 1.30751 * 109.16907 * 180.13417 * 25 24 23
27 27 N 1.35309 * 108.76774 * 0.02562 * 26 25 24
28 28 H 0.96993 * 126.50279 * 179.97438 * 27 26 25
29 29 C 1.35088 * 123.94668 * 343.35447 * 24 23 22
30 30 C 1.44110 * 126.74060 * 334.88487 * 16 15 14
31 31 H 1.09002 * 109.10523 * 253.58257 * 30 16 15
32 32 C 1.46819 * 125.37527 * 0.02588 * 9 7 2
33 33 H 0.97006 * 120.00037 * 0.02562 * 1 2 3
34 34 H 1.08998 * 110.10329 * 42.97019 * 10 9 7
35 35 H 1.09007 * 110.09501 * 281.36809 * 10 9 7
36 36 H 1.09003 * 108.67225 * 168.34010 * 13 11 10
37 37 H 1.09004 * 108.67216 * 50.44232 * 13 11 10
38 38 H 1.09004 * 108.97726 * 183.96912 * 14 13 11
39 39 H 1.08995 * 108.97541 * 65.25708 * 14 13 11
40 40 H 1.09007 * 108.84324 * 281.94053 * 15 14 13
41 41 H 1.08994 * 108.76093 * 163.52022 * 15 14 13
42 42 H 1.09008 * 109.47123 * 49.42084 * 21 19 17
43 43 H 1.08996 * 109.47840 * 289.40835 * 21 19 17
44 44 H 1.09004 * 109.45778 * 169.98255 * 22 21 19
45 45 H 1.08999 * 109.45049 * 50.01708 * 22 21 19
46 46 H 1.09001 * 109.67831 * 169.71647 * 23 22 21
47 47 H 1.08997 * 109.67336 * 290.22184 * 23 22 21
48 48 H 1.08005 * 125.61985 * 179.97438 * 26 25 24
49 49 H 1.09004 * 109.84081 * 300.38237 * 32 9 7
50 50 H 1.09000 * 109.83724 * 61.28282 * 32 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 3.7102 1.3464 0.0006
5 1 1.8915 2.3963 -1.2126
6 1 1.8914 2.3965 1.2124
7 6 2.0102 -1.2022 0.0005
8 1 3.0902 -1.2022 0.0010
9 7 1.3255 -2.3881 0.0005
10 6 1.9377 -3.7237 0.0016
11 6 0.8363 -4.7032 0.4544
12 1 0.8480 -4.7802 1.5416
13 6 1.0636 -6.0670 -0.1451
14 6 0.8077 -6.1225 -1.6356
15 6 -0.5853 -5.6401 -1.9906
16 7 -0.9667 -4.4538 -1.2590
17 6 -1.8919 -3.6605 -1.8344
18 8 -2.2172 -2.6218 -1.2995
19 6 -2.5221 -4.0641 -3.1425
20 1 -2.4807 -5.1480 -3.2508
21 6 -3.9827 -3.5967 -3.1783
22 6 -4.5387 -3.7696 -4.5944
23 6 -3.8795 -2.7508 -5.5321
24 6 -2.3845 -2.8268 -5.3443
25 7 -1.4285 -2.3578 -6.1497
26 6 -0.2592 -2.6285 -5.6312
27 7 -0.4427 -3.2878 -4.4639
28 1 0.2514 -3.6107 -3.8683
29 6 -1.7863 -3.4117 -4.2837
30 6 -0.4562 -4.0283 0.0197
31 1 -1.2164 -4.1988 0.7820
32 6 -0.1362 -2.5256 -0.0005
33 1 -0.4850 0.8401 -0.0004
34 1 2.7741 -3.7519 0.7000
35 1 2.2780 -3.9805 -1.0016
36 1 0.4034 -6.7798 0.3490
37 1 2.0956 -6.3633 0.0429
38 1 0.9245 -7.1510 -1.9772
39 1 1.5403 -5.4962 -2.1446
40 1 -1.2994 -6.4339 -1.7713
41 1 -0.6192 -5.4216 -3.0579
42 1 -4.0350 -2.5459 -2.8931
43 1 -4.5721 -4.1923 -2.4812
44 1 -5.6167 -3.6086 -4.5834
45 1 -4.3258 -4.7787 -4.9472
46 1 -4.1320 -2.9864 -6.5659
47 1 -4.2295 -1.7477 -5.2883
48 1 0.6960 -2.3693 -6.0637
49 1 -0.5538 -2.0436 0.8834
50 1 -0.5499 -2.0702 -0.9003
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050136527.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:59:02
Heat of formation + Delta-G solvation = 61.339813 kcal
Electronic energy + Delta-G solvation = -33001.926935 eV
Core-core repulsion = 29030.770189 eV
Total energy + Delta-G solvation = -3971.156746 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.28083 -40.58579 -38.05508 -36.17583 -35.58400 -33.39353 -32.91297 -32.08084
-30.23544 -29.53648 -28.82988 -27.25596 -25.71790 -24.55778 -23.77484 -22.32702
-22.08838 -21.66932 -20.57636 -19.60654 -18.78938 -18.10393 -17.68288 -17.08234
-16.53854 -15.80935 -15.36601 -15.17102 -14.74346 -14.58353 -14.47483 -14.23330
-14.03852 -13.81892 -13.62680 -13.51879 -13.27295 -13.09194 -12.62216 -12.48215
-12.26973 -11.95839 -11.76404 -11.44060 -11.21948 -11.08156 -11.01717 -10.91360
-10.87362 -10.77312 -10.68395 -10.39472 -10.30228 -10.09599 -9.96383 -9.81068
-9.70123 -9.64829 -9.00606 -8.47834 -8.07075 -7.94553 -6.71437 -5.60146
-2.97432 2.12682 2.93402 3.22509 3.26673 3.34818 3.42649 3.47071
3.50743 4.47285 4.53960 4.59374 4.73020 4.75520 4.80342 4.84055
4.97209 5.05664 5.15736 5.24089 5.27188 5.32010 5.34195 5.45045
5.52788 5.58103 5.64447 5.67801 5.72794 5.80793 5.86795 5.89578
5.99327 6.01239 6.03172 6.11241 6.12919 6.18289 6.35903 6.37047
6.41248 6.52557 6.65158 6.70232 6.87902 7.04012 7.50150 7.54937
7.72553 7.81329 8.10277 8.21832 8.36904 8.63035 9.29206 9.90365
10.54201 11.47496
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.009715 B = 0.005158 C = 0.004103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2881.371414 B = 5427.674229 C = 6821.857298
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.903 5.903
2 C -0.004 4.004
3 Si 0.906 3.094
4 H -0.281 1.281
5 H -0.291 1.291
6 H -0.290 1.290
7 C -0.239 4.239
8 H 0.075 0.925
9 N -0.607 5.607
10 C 0.143 3.857
11 C -0.103 4.103
12 H 0.080 0.920
13 C -0.101 4.101
14 C -0.128 4.128
15 C 0.114 3.886
16 N -0.592 5.592
17 C 0.493 3.507
18 O -0.482 6.482
19 C -0.029 4.029
20 H 0.097 0.903
21 C -0.102 4.102
22 C -0.114 4.114
23 C -0.034 4.034
24 C 0.013 3.987
25 N -0.488 5.488
26 C 0.185 3.815
27 N -0.552 5.552
28 H 0.421 0.579
29 C -0.012 4.012
30 C 0.130 3.870
31 H 0.056 0.944
32 C 0.163 3.837
33 H 0.252 0.748
34 H 0.031 0.969
35 H 0.011 0.989
36 H 0.058 0.942
37 H 0.067 0.933
38 H 0.075 0.925
39 H 0.067 0.933
40 H 0.057 0.943
41 H 0.063 0.937
42 H 0.086 0.914
43 H 0.073 0.927
44 H 0.074 0.926
45 H 0.064 0.936
46 H 0.075 0.925
47 H 0.076 0.924
48 H 0.207 0.793
49 H 0.050 0.950
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.768 -16.412 -7.737 18.761
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.201 4.201
3 Si 0.736 3.264
4 H -0.206 1.206
5 H -0.218 1.218
6 H -0.217 1.217
7 C -0.367 4.367
8 H 0.093 0.907
9 N -0.334 5.334
10 C 0.016 3.984
11 C -0.122 4.122
12 H 0.098 0.902
13 C -0.139 4.139
14 C -0.165 4.165
15 C -0.010 4.010
16 N -0.327 5.327
17 C 0.279 3.721
18 O -0.354 6.354
19 C -0.051 4.051
20 H 0.115 0.885
21 C -0.141 4.141
22 C -0.152 4.152
23 C -0.072 4.072
24 C -0.117 4.117
25 N -0.207 5.207
26 C -0.098 4.098
27 N -0.153 5.153
28 H 0.259 0.741
29 C -0.130 4.130
30 C 0.027 3.973
31 H 0.074 0.926
32 C 0.039 3.961
33 H 0.062 0.938
34 H 0.050 0.950
35 H 0.029 0.971
36 H 0.076 0.924
37 H 0.085 0.915
38 H 0.093 0.907
39 H 0.086 0.914
40 H 0.076 0.924
41 H 0.081 0.919
42 H 0.105 0.895
43 H 0.092 0.908
44 H 0.093 0.907
45 H 0.083 0.917
46 H 0.094 0.906
47 H 0.095 0.905
48 H 0.224 0.776
49 H 0.068 0.932
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -5.118 -15.199 -8.157 17.993
hybrid contribution 1.386 0.281 1.139 1.816
sum -3.731 -14.918 -7.019 16.904
Atomic orbital electron populations
1.70019 1.04485 1.24790 1.55625 1.24847 0.95675 0.97521 1.02079
0.86152 0.78646 0.84301 0.77276 1.20629 1.21813 1.21736 1.18978
0.90205 0.82398 1.45118 0.90720 1.44419 1.01882 0.99701 1.87379
1.21358 0.93882 0.86202 0.96951 1.21317 0.95887 0.94459 1.00561
0.90155 1.20472 1.01865 0.96701 0.94873 1.21132 0.96205 1.01474
0.97726 1.20806 0.96973 0.87830 0.95378 1.46757 1.41193 1.23590
1.21161 1.20522 0.80800 0.84361 0.86462 1.90833 1.59418 1.21818
1.63317 1.19973 0.95820 1.00089 0.89262 0.88538 1.21507 0.91368
1.03962 0.97227 1.21589 0.99912 0.99305 0.94389 1.19938 0.87436
0.99982 0.99835 1.20422 0.95844 1.02519 0.92964 1.69938 0.97842
1.22319 1.30650 1.24975 0.99140 0.99585 0.86121 1.43015 1.07344
1.44544 1.20430 0.74101 1.20334 0.83364 1.09473 0.99799 1.21133
0.94519 0.99024 0.82670 0.92551 1.21861 0.83478 0.86616 1.04195
0.93766 0.95041 0.97134 0.92368 0.91450 0.90660 0.91424 0.92439
0.91903 0.89489 0.90838 0.90743 0.91721 0.90623 0.90508 0.77647
0.93184 0.89330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.85 10.26 55.49 0.57 -27.29 16
2 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16
3 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16
4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16
5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16
6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
7 C -0.24 -6.78 10.25 -15.06 -0.15 -6.93 16
8 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16
9 N -0.61 -15.58 3.39 -171.51 -0.58 -16.16 16
10 C 0.14 2.86 6.65 -3.19 -0.02 2.84 16
11 C -0.10 -1.68 3.05 -91.58 -0.28 -1.96 16
12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16
13 C -0.10 -1.20 5.17 -28.72 -0.15 -1.35 16
14 C -0.13 -1.35 5.83 -28.27 -0.16 -1.51 16
15 C 0.11 1.31 5.17 -5.80 -0.03 1.28 16
16 N -0.59 -9.46 3.09 -170.34 -0.53 -9.99 16
17 C 0.49 8.73 5.98 -10.98 -0.07 8.67 16
18 O -0.48 -11.05 12.91 5.55 0.07 -10.98 16
19 C -0.03 -0.40 2.01 -92.74 -0.19 -0.58 16
20 H 0.10 1.06 6.38 -51.93 -0.33 0.73 16
21 C -0.10 -1.30 5.06 -26.47 -0.13 -1.43 16
22 C -0.11 -1.16 5.90 -26.49 -0.16 -1.32 16
23 C -0.03 -0.42 6.30 -27.62 -0.17 -0.60 16
24 C 0.01 0.21 6.99 -82.90 -0.58 -0.37 16
25 N -0.49 -8.14 11.24 -10.74 -0.12 -8.27 16
26 C 0.18 2.70 13.05 -89.92 -1.17 1.52 16
27 N -0.55 -8.14 5.75 -10.27 -0.06 -8.20 16
28 H 0.42 5.89 8.27 -40.82 -0.34 5.56 16
29 C -0.01 -0.19 5.97 -81.83 -0.49 -0.68 16
30 C 0.13 2.47 3.16 -69.30 -0.22 2.25 16
31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
32 C 0.16 4.10 4.13 -3.53 -0.01 4.08 16
33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16
34 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16
35 H 0.01 0.22 6.69 -51.92 -0.35 -0.13 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16
38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
39 H 0.07 0.78 7.00 -51.93 -0.36 0.42 16
40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
41 H 0.06 0.67 5.02 -51.93 -0.26 0.41 16
42 H 0.09 1.36 7.47 -51.92 -0.39 0.97 16
43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16
46 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16
47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
48 H 0.21 2.22 8.06 -52.48 -0.42 1.80 16
49 H 0.05 1.46 7.37 -51.93 -0.38 1.08 16
50 H 0.09 2.52 4.41 -51.96 -0.23 2.29 16
LS Contribution 372.10 15.07 5.61 5.61
Total: -1.00 -35.98 372.10 -11.83 -47.81
By element:
Atomic # 1 Polarization: 13.58 SS G_CDS: -7.68 Total: 5.90 kcal
Atomic # 6 Polarization: 7.80 SS G_CDS: -4.08 Total: 3.71 kcal
Atomic # 7 Polarization: -69.18 SS G_CDS: -0.72 Total: -69.90 kcal
Atomic # 8 Polarization: -11.05 SS G_CDS: 0.07 Total: -10.98 kcal
Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -35.98 -11.83 -47.81 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050136527.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.150 kcal
(2) G-P(sol) polarization free energy of solvation -35.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.166 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.811 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds