Wall clock time and date at job start Wed Apr 1 2020 03:01:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86808 * 119.99883 * 2 1
4 4 H 1.48499 * 109.46802 * 90.00079 * 3 2 1
5 5 H 1.48502 * 109.47004 * 210.00298 * 3 2 1
6 6 H 1.48501 * 109.46897 * 330.00202 * 3 2 1
7 7 C 1.38810 * 120.00164 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99922 * 179.97438 * 7 2 1
9 9 N 1.36931 * 120.00152 * 0.02562 * 7 2 1
10 10 C 1.46924 * 125.37660 * 179.71851 * 9 7 2
11 11 C 1.54347 * 106.17813 * 162.06324 * 10 9 7
12 12 H 1.08996 * 109.00805 * 271.41940 * 11 10 9
13 13 C 1.50714 * 110.39903 * 151.30747 * 11 10 9
14 14 C 1.51331 * 113.54666 * 289.56874 * 13 11 10
15 15 C 1.51622 * 111.97816 * 304.60991 * 14 13 11
16 16 N 1.44503 * 112.65866 * 42.76240 * 15 14 13
17 17 C 1.34774 * 116.63513 * 154.57819 * 16 15 14
18 18 O 1.21282 * 119.99925 * 174.18592 * 17 16 15
19 19 C 1.50700 * 119.99844 * 354.18258 * 17 16 15
20 20 H 1.08995 * 109.47715 * 322.24843 * 19 17 16
21 21 C 1.53123 * 109.47672 * 202.22986 * 19 17 16
22 22 C 1.53355 * 109.52505 * 169.99229 * 21 19 17
23 23 C 1.50855 * 108.41455 * 49.98657 * 22 21 19
24 24 N 1.33581 * 128.03555 * 163.22021 * 23 22 21
25 25 C 1.30750 * 109.14622 * 180.15870 * 24 23 22
26 26 N 1.35307 * 108.77238 * 359.97438 * 25 24 23
27 27 H 0.96999 * 126.50070 * 179.97438 * 26 25 24
28 28 C 1.35033 * 123.98675 * 343.34116 * 23 22 21
29 29 C 1.50647 * 124.45626 * 359.82032 * 28 23 22
30 30 C 1.44101 * 126.73518 * 334.59785 * 16 15 14
31 31 H 1.08998 * 109.10862 * 254.76515 * 30 16 15
32 32 C 1.46818 * 125.37642 * 0.02562 * 9 7 2
33 33 H 0.97000 * 120.00172 * 0.02562 * 1 2 3
34 34 H 1.09002 * 110.10050 * 281.37477 * 10 9 7
35 35 H 1.09008 * 110.09603 * 42.97949 * 10 9 7
36 36 H 1.08997 * 108.66644 * 168.51322 * 13 11 10
37 37 H 1.09004 * 108.55973 * 50.54160 * 13 11 10
38 38 H 1.09003 * 108.97600 * 183.96769 * 14 13 11
39 39 H 1.08998 * 108.91462 * 65.21240 * 14 13 11
40 40 H 1.09008 * 108.84771 * 281.93960 * 15 14 13
41 41 H 1.09000 * 108.76292 * 163.52571 * 15 14 13
42 42 H 1.09004 * 109.46233 * 290.01339 * 21 19 17
43 43 H 1.09001 * 109.46058 * 49.97455 * 21 19 17
44 44 H 1.09011 * 109.68871 * 290.24828 * 22 21 19
45 45 H 1.09005 * 109.69132 * 169.73207 * 22 21 19
46 46 H 1.08003 * 125.61315 * 180.02562 * 25 24 23
47 47 H 1.08997 * 109.68461 * 223.88364 * 29 28 23
48 48 H 1.09004 * 109.68234 * 103.32160 * 29 28 23
49 49 H 1.08999 * 109.84345 * 300.37801 * 32 9 7
50 50 H 1.09002 * 109.83619 * 61.28939 * 32 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 1.4001
5 1 3.5477 1.4403 -0.7001
6 1 1.4475 2.6527 -0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3257 -2.3880 -0.0016
10 6 1.9379 -3.7236 -0.0081
11 6 0.8369 -4.7036 0.4496
12 1 0.8595 -4.7804 1.5366
13 6 1.0638 -6.0668 -0.1518
14 6 0.8072 -6.1205 -1.6422
15 6 -0.5860 -5.6377 -1.9958
16 7 -0.9671 -4.4523 -1.2626
17 6 -1.8923 -3.6581 -1.8368
18 8 -2.3343 -2.7054 -1.2302
19 6 -2.3773 -3.9537 -3.2326
20 1 -1.5441 -4.3076 -3.8396
21 6 -2.9556 -2.6787 -3.8529
22 6 -3.2183 -2.9088 -5.3462
23 6 -4.0009 -4.1892 -5.5006
24 7 -4.6954 -4.6064 -6.5626
25 6 -5.2322 -5.7681 -6.2946
26 7 -4.8881 -6.1269 -5.0362
27 1 -5.1471 -6.9412 -4.5772
28 6 -4.1096 -5.1284 -4.5364
29 6 -3.4653 -5.0338 -3.1780
30 6 -0.4602 -4.0313 0.0189
31 1 -1.2155 -4.2213 0.7814
32 6 -0.1360 -2.5257 -0.0028
33 1 -0.4850 0.8400 -0.0004
34 1 2.2736 -3.9769 -1.0138
35 1 2.7775 -3.7542 0.6864
36 1 0.4039 -6.7802 0.3419
37 1 2.0967 -6.3609 0.0352
38 1 0.9238 -7.1486 -1.9852
39 1 1.5395 -5.4926 -2.1497
40 1 -1.3000 -6.4318 -1.7771
41 1 -0.6205 -5.4180 -3.0629
42 1 -3.8910 -2.4243 -3.3544
43 1 -2.2452 -1.8610 -3.7309
44 1 -2.2701 -2.9918 -5.8774
45 1 -3.7937 -2.0759 -5.7504
46 1 -5.8482 -6.3464 -6.9673
47 1 -3.0178 -5.9926 -2.9163
48 1 -4.2147 -4.7626 -2.4343
49 1 -0.5537 -2.0445 0.8816
50 1 -0.5498 -2.0695 -0.9022
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001050179791.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:01:00
Heat of formation + Delta-G solvation = 57.919502 kcal
Electronic energy + Delta-G solvation = -32064.336953 eV
Core-core repulsion = 28093.031892 eV
Total energy + Delta-G solvation = -3971.305061 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.40991 -40.65095 -38.10152 -36.02806 -35.35731 -33.36406 -33.06889 -32.03116
-30.13839 -29.60450 -29.12016 -27.07207 -25.61834 -24.45438 -23.70896 -22.93911
-21.97611 -21.66441 -20.63406 -19.49587 -18.69068 -18.06564 -17.74043 -17.11533
-16.42689 -15.89701 -15.41735 -15.35647 -14.70918 -14.62711 -14.26353 -14.15682
-13.96948 -13.71866 -13.70168 -13.57819 -13.22676 -13.14668 -12.56671 -12.48843
-12.25950 -12.04600 -11.58773 -11.48123 -11.31599 -11.14679 -10.93894 -10.93407
-10.81860 -10.68837 -10.54219 -10.27321 -10.16498 -9.97647 -9.96754 -9.92954
-9.84025 -9.58187 -8.96929 -8.43693 -8.25704 -7.94880 -6.66637 -5.54718
-2.91353 1.87936 2.82845 3.00462 3.15504 3.45687 3.47337 3.51701
3.54448 4.32345 4.55816 4.59542 4.72085 4.75026 4.81414 4.92090
5.01031 5.09395 5.14450 5.19886 5.25415 5.30957 5.39269 5.47383
5.54626 5.60378 5.66361 5.72047 5.73720 5.85866 5.90523 5.93004
5.97973 5.99497 6.09101 6.15446 6.22737 6.24325 6.33479 6.44750
6.47581 6.61598 6.68795 6.73808 6.81775 7.16027 7.21767 7.64962
7.82024 7.88154 7.96055 8.12469 8.42619 8.73930 9.35329 9.96170
10.60774 11.53587
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012701 B = 0.003663 C = 0.003034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2204.079928 B = 7641.730465 C = 9225.144766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C -0.005 4.005
3 Si 0.907 3.093
4 H -0.290 1.290
5 H -0.283 1.283
6 H -0.291 1.291
7 C -0.235 4.235
8 H 0.075 0.925
9 N -0.607 5.607
10 C 0.142 3.858
11 C -0.104 4.104
12 H 0.079 0.921
13 C -0.101 4.101
14 C -0.129 4.129
15 C 0.114 3.886
16 N -0.589 5.589
17 C 0.503 3.497
18 O -0.498 6.498
19 C -0.100 4.100
20 H 0.096 0.904
21 C -0.100 4.100
22 C -0.035 4.035
23 C 0.010 3.990
24 N -0.486 5.486
25 C 0.172 3.828
26 N -0.562 5.562
27 H 0.418 0.582
28 C -0.023 4.023
29 C -0.030 4.030
30 C 0.132 3.868
31 H 0.056 0.944
32 C 0.172 3.828
33 H 0.252 0.748
34 H 0.015 0.985
35 H 0.031 0.969
36 H 0.055 0.945
37 H 0.065 0.935
38 H 0.071 0.929
39 H 0.071 0.929
40 H 0.050 0.950
41 H 0.074 0.926
42 H 0.075 0.925
43 H 0.084 0.916
44 H 0.076 0.924
45 H 0.081 0.919
46 H 0.207 0.793
47 H 0.077 0.923
48 H 0.084 0.916
49 H 0.051 0.949
50 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.649 -18.757 -8.303 21.893
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.202 4.202
3 Si 0.738 3.262
4 H -0.217 1.217
5 H -0.208 1.208
6 H -0.217 1.217
7 C -0.363 4.363
8 H 0.093 0.907
9 N -0.334 5.334
10 C 0.015 3.985
11 C -0.123 4.123
12 H 0.097 0.903
13 C -0.139 4.139
14 C -0.166 4.166
15 C -0.010 4.010
16 N -0.323 5.323
17 C 0.289 3.711
18 O -0.371 6.371
19 C -0.122 4.122
20 H 0.114 0.886
21 C -0.138 4.138
22 C -0.073 4.073
23 C -0.119 4.119
24 N -0.205 5.205
25 C -0.110 4.110
26 N -0.165 5.165
27 H 0.256 0.744
28 C -0.139 4.139
29 C -0.069 4.069
30 C 0.028 3.972
31 H 0.074 0.926
32 C 0.047 3.953
33 H 0.063 0.937
34 H 0.032 0.968
35 H 0.049 0.951
36 H 0.074 0.926
37 H 0.084 0.916
38 H 0.090 0.910
39 H 0.089 0.911
40 H 0.068 0.932
41 H 0.092 0.908
42 H 0.094 0.906
43 H 0.103 0.897
44 H 0.095 0.905
45 H 0.099 0.901
46 H 0.223 0.777
47 H 0.096 0.904
48 H 0.102 0.898
49 H 0.069 0.931
50 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -7.989 -17.559 -8.696 21.161
hybrid contribution 0.417 -0.282 0.895 1.027
sum -7.572 -17.841 -7.802 20.893
Atomic orbital electron populations
1.70009 1.04492 1.24871 1.56007 1.24833 0.95686 0.97480 1.02223
0.86206 0.78570 0.84004 0.77464 1.21721 1.20847 1.21687 1.18959
0.90231 0.82432 1.44725 0.90731 1.44380 1.01872 0.99798 1.87352
1.21412 0.93841 0.86099 0.97102 1.21387 0.96026 0.94520 1.00405
0.90282 1.20483 1.01659 0.96648 0.95123 1.21127 0.96769 1.01291
0.97458 1.20859 0.96418 0.87364 0.96323 1.46750 1.41241 1.23663
1.20685 1.20386 0.80102 0.82889 0.87685 1.90817 1.55309 1.27389
1.63620 1.21376 0.98377 0.97309 0.95145 0.88592 1.21450 1.02607
0.96238 0.93506 1.20003 0.98419 0.92341 0.96533 1.20626 1.02921
0.98192 0.90202 1.69986 1.12293 1.10120 1.28103 1.25004 1.04574
0.95614 0.85827 1.42917 1.40019 1.19060 1.14487 0.74419 1.20880
1.02510 0.91831 0.98672 1.19971 0.96863 0.99035 0.91002 1.21164
0.94303 0.98875 0.82837 0.92567 1.21697 0.83510 0.86532 1.03527
0.93731 0.96777 0.95093 0.92608 0.91611 0.90994 0.91079 0.93157
0.90775 0.90645 0.89732 0.90534 0.90083 0.77690 0.90421 0.89764
0.93098 0.90463
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.85 10.26 55.49 0.57 -27.28 16
2 C 0.00 -0.14 5.48 -17.43 -0.10 -0.24 16
3 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16
4 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
6 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16
7 C -0.24 -6.75 10.25 -15.06 -0.15 -6.91 16
8 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16
9 N -0.61 -15.95 3.39 -171.17 -0.58 -16.53 16
10 C 0.14 2.95 6.65 -3.11 -0.02 2.93 16
11 C -0.10 -1.76 3.06 -91.41 -0.28 -2.04 16
12 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16
13 C -0.10 -1.27 5.17 -28.72 -0.15 -1.42 16
14 C -0.13 -1.47 5.83 -28.27 -0.16 -1.63 16
15 C 0.11 1.36 5.13 -5.81 -0.03 1.33 16
16 N -0.59 -9.69 3.09 -170.02 -0.53 -10.22 16
17 C 0.50 8.86 5.89 -10.99 -0.06 8.80 16
18 O -0.50 -11.15 13.54 5.56 0.08 -11.08 16
19 C -0.10 -1.34 1.70 -91.50 -0.16 -1.50 16
20 H 0.10 1.19 6.09 -51.93 -0.32 0.87 16
21 C -0.10 -1.43 4.56 -26.48 -0.12 -1.55 16
22 C -0.03 -0.45 6.30 -27.62 -0.17 -0.62 16
23 C 0.01 0.14 6.98 -82.89 -0.58 -0.44 16
24 N -0.49 -6.41 11.25 -10.74 -0.12 -6.53 16
25 C 0.17 1.58 13.05 -89.93 -1.17 0.41 16
26 N -0.56 -4.57 6.15 -10.28 -0.06 -4.63 16
27 H 0.42 1.87 8.96 -40.82 -0.37 1.51 16
28 C -0.02 -0.25 7.08 -81.85 -0.58 -0.83 16
29 C -0.03 -0.32 5.43 -27.70 -0.15 -0.47 16
30 C 0.13 2.56 3.13 -69.02 -0.22 2.35 16
31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
32 C 0.17 4.39 4.13 -3.33 -0.01 4.37 16
33 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16
34 H 0.01 0.30 6.68 -51.93 -0.35 -0.05 16
35 H 0.03 0.63 8.14 -51.92 -0.42 0.21 16
36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16
38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
39 H 0.07 0.93 6.98 -51.93 -0.36 0.56 16
40 H 0.05 0.49 7.36 -51.92 -0.38 0.11 16
41 H 0.07 0.80 5.53 -51.93 -0.29 0.52 16
42 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16
43 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16
44 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16
45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
46 H 0.21 1.00 8.06 -52.48 -0.42 0.58 16
47 H 0.08 0.67 6.67 -51.93 -0.35 0.32 16
48 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16
49 H 0.05 1.49 7.37 -51.93 -0.38 1.11 16
50 H 0.08 2.20 4.71 -51.93 -0.24 1.96 16
LS Contribution 372.34 15.07 5.61 5.61
Total: -1.00 -36.63 372.34 -11.82 -48.45
By element:
Atomic # 1 Polarization: 9.57 SS G_CDS: -7.65 Total: 1.92 kcal
Atomic # 6 Polarization: 6.65 SS G_CDS: -4.12 Total: 2.53 kcal
Atomic # 7 Polarization: -64.46 SS G_CDS: -0.72 Total: -65.18 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.08 kcal
Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -36.63 -11.82 -48.45 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050179791.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 106.369 kcal
(2) G-P(sol) polarization free energy of solvation -36.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.743 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.449 kcal
(6) G-S(sol) free energy of system = (1) + (5) 57.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds