Wall clock time and date at job start Wed Apr 1 2020 03:00:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86808 * 119.99883 * 2 1
4 4 H 1.48499 * 109.46802 * 90.00079 * 3 2 1
5 5 H 1.48502 * 109.47004 * 210.00298 * 3 2 1
6 6 H 1.48501 * 109.46897 * 330.00202 * 3 2 1
7 7 C 1.38810 * 120.00164 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99922 * 179.97438 * 7 2 1
9 9 N 1.36931 * 120.00152 * 0.02562 * 7 2 1
10 10 C 1.46924 * 125.37660 * 179.71851 * 9 7 2
11 11 C 1.54347 * 106.17813 * 162.06324 * 10 9 7
12 12 H 1.08996 * 109.00805 * 271.41940 * 11 10 9
13 13 C 1.50714 * 110.39903 * 151.30747 * 11 10 9
14 14 C 1.51331 * 113.54666 * 289.56874 * 13 11 10
15 15 C 1.51622 * 111.97816 * 304.60991 * 14 13 11
16 16 N 1.44503 * 112.65866 * 42.76240 * 15 14 13
17 17 C 1.34774 * 116.63513 * 154.57819 * 16 15 14
18 18 O 1.21282 * 119.99925 * 174.18592 * 17 16 15
19 19 C 1.50700 * 119.99844 * 354.18258 * 17 16 15
20 20 H 1.08995 * 109.47715 * 322.24843 * 19 17 16
21 21 C 1.53123 * 109.47672 * 202.22986 * 19 17 16
22 22 C 1.53355 * 109.52505 * 169.99229 * 21 19 17
23 23 C 1.50855 * 108.41455 * 49.98657 * 22 21 19
24 24 N 1.33581 * 128.03555 * 163.22021 * 23 22 21
25 25 C 1.30750 * 109.14622 * 180.15870 * 24 23 22
26 26 N 1.35307 * 108.77238 * 359.97438 * 25 24 23
27 27 H 0.96999 * 126.50070 * 179.97438 * 26 25 24
28 28 C 1.35033 * 123.98675 * 343.34116 * 23 22 21
29 29 C 1.50647 * 124.45626 * 359.82032 * 28 23 22
30 30 C 1.44101 * 126.73518 * 334.59785 * 16 15 14
31 31 H 1.08998 * 109.10862 * 254.76515 * 30 16 15
32 32 C 1.46818 * 125.37642 * 0.02562 * 9 7 2
33 33 H 0.97000 * 120.00172 * 0.02562 * 1 2 3
34 34 H 1.09002 * 110.10050 * 281.37477 * 10 9 7
35 35 H 1.09008 * 110.09603 * 42.97949 * 10 9 7
36 36 H 1.08997 * 108.66644 * 168.51322 * 13 11 10
37 37 H 1.09004 * 108.55973 * 50.54160 * 13 11 10
38 38 H 1.09003 * 108.97600 * 183.96769 * 14 13 11
39 39 H 1.08998 * 108.91462 * 65.21240 * 14 13 11
40 40 H 1.09008 * 108.84771 * 281.93960 * 15 14 13
41 41 H 1.09000 * 108.76292 * 163.52571 * 15 14 13
42 42 H 1.09004 * 109.46233 * 290.01339 * 21 19 17
43 43 H 1.09001 * 109.46058 * 49.97455 * 21 19 17
44 44 H 1.09011 * 109.68871 * 290.24828 * 22 21 19
45 45 H 1.09005 * 109.69132 * 169.73207 * 22 21 19
46 46 H 1.08003 * 125.61315 * 180.02562 * 25 24 23
47 47 H 1.08997 * 109.68461 * 223.88364 * 29 28 23
48 48 H 1.09004 * 109.68234 * 103.32160 * 29 28 23
49 49 H 1.08999 * 109.84345 * 300.37801 * 32 9 7
50 50 H 1.09002 * 109.83619 * 61.28939 * 32 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4977 2.0464 1.4001
5 1 3.5477 1.4403 -0.7001
6 1 1.4475 2.6527 -0.7000
7 6 2.0103 -1.2021 -0.0005
8 1 3.0903 -1.2021 -0.0010
9 7 1.3257 -2.3880 -0.0016
10 6 1.9379 -3.7236 -0.0081
11 6 0.8369 -4.7036 0.4496
12 1 0.8595 -4.7804 1.5366
13 6 1.0638 -6.0668 -0.1518
14 6 0.8072 -6.1205 -1.6422
15 6 -0.5860 -5.6377 -1.9958
16 7 -0.9671 -4.4523 -1.2626
17 6 -1.8923 -3.6581 -1.8368
18 8 -2.3343 -2.7054 -1.2302
19 6 -2.3773 -3.9537 -3.2326
20 1 -1.5441 -4.3076 -3.8396
21 6 -2.9556 -2.6787 -3.8529
22 6 -3.2183 -2.9088 -5.3462
23 6 -4.0009 -4.1892 -5.5006
24 7 -4.6954 -4.6064 -6.5626
25 6 -5.2322 -5.7681 -6.2946
26 7 -4.8881 -6.1269 -5.0362
27 1 -5.1471 -6.9412 -4.5772
28 6 -4.1096 -5.1284 -4.5364
29 6 -3.4653 -5.0338 -3.1780
30 6 -0.4602 -4.0313 0.0189
31 1 -1.2155 -4.2213 0.7814
32 6 -0.1360 -2.5257 -0.0028
33 1 -0.4850 0.8400 -0.0004
34 1 2.2736 -3.9769 -1.0138
35 1 2.7775 -3.7542 0.6864
36 1 0.4039 -6.7802 0.3419
37 1 2.0967 -6.3609 0.0352
38 1 0.9238 -7.1486 -1.9852
39 1 1.5395 -5.4926 -2.1497
40 1 -1.3000 -6.4318 -1.7771
41 1 -0.6205 -5.4180 -3.0629
42 1 -3.8910 -2.4243 -3.3544
43 1 -2.2452 -1.8610 -3.7309
44 1 -2.2701 -2.9918 -5.8774
45 1 -3.7937 -2.0759 -5.7504
46 1 -5.8482 -6.3464 -6.9673
47 1 -3.0178 -5.9926 -2.9163
48 1 -4.2147 -4.7626 -2.4343
49 1 -0.5537 -2.0445 0.8816
50 1 -0.5498 -2.0695 -0.9022
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001050179791.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:00:59
Heat of formation + Delta-G solvation = 33.337870 kcal
Electronic energy + Delta-G solvation = -32065.402893 eV
Core-core repulsion = 28093.031892 eV
Total energy + Delta-G solvation = -3972.371001 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-43.22740 -42.00856 -39.50893 -37.24877 -36.90429 -34.71701 -34.05046 -33.73343
-31.64567 -30.80655 -30.19752 -28.64892 -27.32151 -25.84009 -24.83284 -24.10591
-23.28399 -22.51450 -22.27666 -20.78531 -19.75443 -19.27899 -18.92557 -18.52842
-17.95748 -17.25995 -16.99971 -16.31485 -16.26352 -15.89110 -15.67761 -15.32317
-15.18831 -15.06840 -14.78747 -14.69566 -14.34457 -14.18028 -14.07422 -13.84573
-13.68509 -13.43443 -13.03475 -12.91619 -12.88694 -12.63366 -12.61423 -12.45448
-12.11693 -12.06676 -11.95637 -11.79684 -11.70538 -11.51523 -11.39374 -11.30063
-10.83939 -10.75919 -10.73750 -10.33139 -9.36536 -9.09434 -8.82380 -7.77800
-5.17493 1.10611 1.41706 1.44935 1.53695 1.68770 2.07728 2.17725
2.35744 2.49677 3.35265 3.38444 3.57070 3.66715 3.72792 3.75842
3.82239 3.88032 4.02652 4.07722 4.10560 4.15134 4.21891 4.28685
4.42939 4.52331 4.56404 4.62390 4.66211 4.72420 4.73811 4.78306
4.87258 4.89998 4.94800 5.00489 5.04188 5.13198 5.18185 5.22277
5.27465 5.33409 5.40814 5.45794 5.50314 5.55837 5.78860 5.85121
6.08094 6.26816 6.53418 6.65171 7.11602 7.18464 7.38306 7.83526
8.45631 9.28028
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012701 B = 0.003663 C = 0.003034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2204.079928 B = 7641.730465 C = 9225.144766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.941 5.941
2 C -0.068 4.068
3 Si 0.976 3.024
4 H -0.285 1.285
5 H -0.266 1.266
6 H -0.297 1.297
7 C -0.247 4.247
8 H 0.082 0.918
9 N -0.630 5.630
10 C 0.135 3.865
11 C -0.090 4.090
12 H 0.081 0.919
13 C -0.097 4.097
14 C -0.127 4.127
15 C 0.100 3.900
16 N -0.586 5.586
17 C 0.496 3.504
18 O -0.560 6.560
19 C -0.087 4.087
20 H 0.114 0.886
21 C -0.094 4.094
22 C -0.027 4.027
23 C -0.021 4.021
24 N -0.532 5.532
25 C 0.190 3.810
26 N -0.545 5.545
27 H 0.439 0.561
28 C -0.021 4.021
29 C -0.018 4.018
30 C 0.145 3.855
31 H 0.051 0.949
32 C 0.186 3.814
33 H 0.241 0.759
34 H 0.023 0.977
35 H 0.036 0.964
36 H 0.083 0.917
37 H 0.084 0.916
38 H 0.117 0.883
39 H 0.050 0.950
40 H 0.090 0.910
41 H 0.089 0.911
42 H 0.058 0.942
43 H 0.049 0.951
44 H 0.080 0.920
45 H 0.074 0.926
46 H 0.249 0.751
47 H 0.113 0.887
48 H 0.076 0.924
49 H -0.007 1.007
50 H 0.041 0.959
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.070 -23.506 -9.587 26.352
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.589 5.589
2 C -0.261 4.261
3 Si 0.804 3.196
4 H -0.212 1.212
5 H -0.190 1.190
6 H -0.224 1.224
7 C -0.376 4.376
8 H 0.100 0.900
9 N -0.357 5.357
10 C 0.010 3.990
11 C -0.109 4.109
12 H 0.100 0.900
13 C -0.135 4.135
14 C -0.164 4.164
15 C -0.021 4.021
16 N -0.319 5.319
17 C 0.284 3.716
18 O -0.438 6.438
19 C -0.109 4.109
20 H 0.132 0.868
21 C -0.132 4.132
22 C -0.065 4.065
23 C -0.150 4.150
24 N -0.252 5.252
25 C -0.094 4.094
26 N -0.149 5.149
27 H 0.280 0.720
28 C -0.139 4.139
29 C -0.057 4.057
30 C 0.040 3.960
31 H 0.069 0.931
32 C 0.060 3.940
33 H 0.051 0.949
34 H 0.041 0.959
35 H 0.054 0.946
36 H 0.101 0.899
37 H 0.102 0.898
38 H 0.135 0.865
39 H 0.069 0.931
40 H 0.108 0.892
41 H 0.107 0.893
42 H 0.077 0.923
43 H 0.068 0.932
44 H 0.098 0.902
45 H 0.092 0.908
46 H 0.265 0.735
47 H 0.131 0.869
48 H 0.094 0.906
49 H 0.011 0.989
50 H 0.059 0.941
Dipole moment (debyes) X Y Z Total
from point charges -7.365 -22.409 -9.983 25.614
hybrid contribution 0.231 1.179 1.279 1.755
sum -7.134 -21.230 -8.704 24.028
Atomic orbital electron populations
1.70322 1.06222 1.24746 1.57584 1.25735 0.96514 1.01162 1.02703
0.85120 0.77679 0.79292 0.77493 1.21195 1.19018 1.22424 1.19404
0.90854 0.83811 1.43516 0.89990 1.44716 1.02525 1.01369 1.87118
1.21665 0.95161 0.84464 0.97663 1.21378 0.92435 0.96177 1.00940
0.90023 1.20508 1.03557 0.93478 0.95971 1.21193 0.95412 1.03497
0.96328 1.21339 0.98135 0.86155 0.96508 1.46811 1.40345 1.24954
1.19781 1.21170 0.79638 0.81939 0.88870 1.90800 1.57594 1.30032
1.65356 1.21287 0.99862 0.97633 0.92085 0.86846 1.21307 1.00848
0.96100 0.94970 1.19832 0.98808 0.93052 0.94803 1.20598 1.04309
0.98560 0.91520 1.69934 1.13927 1.12384 1.28942 1.25815 1.02898
0.94435 0.86203 1.42826 1.38826 1.19099 1.14155 0.71971 1.20713
1.02883 0.92196 0.98076 1.19863 0.95737 0.99235 0.90837 1.20700
0.95643 0.95033 0.84672 0.93109 1.21253 0.82997 0.90572 0.99153
0.94929 0.95924 0.94595 0.89866 0.89783 0.86457 0.93077 0.89232
0.89349 0.92341 0.93178 0.90170 0.90774 0.73517 0.86925 0.90567
0.98920 0.94099
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -62.00 10.26 21.65 0.22 -61.77 16
2 C -0.07 -4.13 5.48 84.86 0.47 -3.67 16
3 Si 0.98 48.75 29.55 68.60 2.03 50.77 16
4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16
5 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
6 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16
7 C -0.25 -14.68 10.25 84.03 0.86 -13.82 16
8 H 0.08 4.62 7.83 -2.91 -0.02 4.59 16
9 N -0.63 -34.46 3.39 -695.47 -2.36 -36.82 16
10 C 0.14 5.58 6.65 86.76 0.58 6.16 16
11 C -0.09 -2.92 3.06 -11.31 -0.03 -2.95 16
12 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16
13 C -0.10 -2.00 5.17 29.31 0.15 -1.85 16
14 C -0.13 -2.26 5.83 29.60 0.17 -2.09 16
15 C 0.10 1.97 5.13 86.30 0.44 2.41 16
16 N -0.59 -18.82 3.09 -810.22 -2.50 -21.32 16
17 C 0.50 18.04 5.89 87.66 0.52 18.56 16
18 O -0.56 -27.34 13.54 -3.04 -0.04 -27.38 16
19 C -0.09 -2.32 1.70 -11.36 -0.02 -2.34 16
20 H 0.11 2.63 6.09 -2.39 -0.01 2.61 16
21 C -0.09 -2.91 4.56 30.75 0.14 -2.77 16
22 C -0.03 -0.72 6.30 30.02 0.19 -0.53 16
23 C -0.02 -0.53 6.98 41.60 0.29 -0.24 16
24 N -0.53 -13.15 11.25 -187.90 -2.11 -15.26 16
25 C 0.19 2.81 13.05 180.11 2.35 5.16 16
26 N -0.54 -6.75 6.15 -186.45 -1.15 -7.89 16
27 H 0.44 1.82 8.96 -92.71 -0.83 0.99 16
28 C -0.02 -0.42 7.08 41.14 0.29 -0.13 16
29 C -0.02 -0.35 5.43 29.97 0.16 -0.18 16
30 C 0.14 5.72 3.13 45.56 0.14 5.86 16
31 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16
32 C 0.19 10.13 4.13 86.67 0.36 10.49 16
33 H 0.24 15.68 8.31 -92.71 -0.77 14.91 16
34 H 0.02 0.92 6.68 -2.39 -0.02 0.90 16
35 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16
36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
37 H 0.08 1.50 8.10 -2.39 -0.02 1.48 16
38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16
39 H 0.05 1.14 6.98 -2.39 -0.02 1.12 16
40 H 0.09 1.17 7.36 -2.38 -0.02 1.15 16
41 H 0.09 1.54 5.53 -2.39 -0.01 1.52 16
42 H 0.06 1.96 8.12 -2.38 -0.02 1.94 16
43 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16
44 H 0.08 2.02 8.14 -2.38 -0.02 2.01 16
45 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16
46 H 0.25 1.21 8.06 -2.91 -0.02 1.19 16
47 H 0.11 1.37 6.67 -2.39 -0.02 1.36 16
48 H 0.08 1.63 8.11 -2.39 -0.02 1.61 16
49 H -0.01 -0.48 7.37 -2.39 -0.02 -0.50 16
50 H 0.04 2.54 4.71 -2.39 -0.01 2.53 16
Total: -1.00 -90.34 372.34 1.28 -89.05
By element:
Atomic # 1 Polarization: 12.41 SS G_CDS: 0.14 Total: 12.55 kcal
Atomic # 6 Polarization: 11.03 SS G_CDS: 7.06 Total: 18.08 kcal
Atomic # 7 Polarization: -135.18 SS G_CDS: -7.90 Total: -143.07 kcal
Atomic # 8 Polarization: -27.34 SS G_CDS: -0.04 Total: -27.38 kcal
Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.77 kcal
Total: -90.34 1.28 -89.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001050179791.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.391 kcal
(2) G-P(sol) polarization free energy of solvation -90.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.053 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds