Wall clock time and date at job start Wed Apr 1 2020 03:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00042 * 2 1 4 4 H 1.48497 * 109.46900 * 269.99610 * 3 2 1 5 5 H 1.48498 * 109.46872 * 30.00121 * 3 2 1 6 6 H 1.48504 * 109.47032 * 150.00016 * 3 2 1 7 7 C 1.38809 * 119.99886 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99712 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00337 * 359.73282 * 7 2 1 10 10 C 1.46826 * 125.38377 * 180.27346 * 9 7 2 11 11 C 1.53890 * 107.50445 * 181.00405 * 10 9 7 12 12 H 1.09002 * 109.09893 * 259.49979 * 11 10 9 13 13 C 1.50777 * 110.59169 * 139.42795 * 11 10 9 14 14 C 1.51325 * 113.46510 * 289.12964 * 13 11 10 15 15 C 1.51614 * 112.05804 * 304.71307 * 14 13 11 16 16 N 1.44509 * 112.73237 * 42.34275 * 15 14 13 17 17 C 1.34778 * 116.64941 * 154.48517 * 16 15 14 18 18 O 1.21278 * 119.99918 * 173.87290 * 17 16 15 19 19 C 1.50695 * 119.99914 * 353.87928 * 17 16 15 20 20 H 1.08998 * 109.48000 * 31.99474 * 19 17 16 21 21 C 1.53113 * 109.47369 * 152.01140 * 19 17 16 22 22 C 1.53363 * 109.52853 * 189.99724 * 21 19 17 23 23 C 1.50863 * 108.40996 * 309.99900 * 22 21 19 24 24 N 1.33575 * 128.03796 * 196.75732 * 23 22 21 25 25 C 1.30750 * 109.15263 * 179.97438 * 24 23 22 26 26 N 1.35317 * 108.76498 * 0.02562 * 25 24 23 27 27 H 0.96995 * 126.49807 * 180.02562 * 26 25 24 28 28 C 1.35031 * 123.98335 * 16.72076 * 23 22 21 29 29 C 1.50651 * 124.45739 * 0.09247 * 28 23 22 30 30 C 1.42434 * 126.40988 * 334.64097 * 16 15 14 31 31 H 1.09002 * 109.00933 * 253.58426 * 30 16 15 32 32 C 1.46914 * 125.37492 * 359.96094 * 9 7 2 33 33 H 0.96996 * 119.99735 * 0.02562 * 1 2 3 34 34 H 1.09003 * 109.84557 * 300.49071 * 10 9 7 35 35 H 1.09003 * 109.84667 * 61.51216 * 10 9 7 36 36 H 1.09001 * 108.68144 * 50.15791 * 13 11 10 37 37 H 1.08995 * 108.68374 * 168.23013 * 13 11 10 38 38 H 1.08994 * 108.96591 * 65.37922 * 14 13 11 39 39 H 1.08998 * 108.96406 * 184.13620 * 14 13 11 40 40 H 1.08991 * 108.83098 * 163.18303 * 15 14 13 41 41 H 1.09004 * 108.83165 * 281.61232 * 15 14 13 42 42 H 1.08998 * 109.46616 * 310.00926 * 21 19 17 43 43 H 1.09006 * 109.46475 * 69.97281 * 21 19 17 44 44 H 1.09002 * 109.66448 * 190.27346 * 22 21 19 45 45 H 1.09000 * 109.72105 * 69.74967 * 22 21 19 46 46 H 1.07993 * 125.61699 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.68141 * 256.72161 * 29 28 23 48 48 H 1.08995 * 109.68044 * 136.16730 * 29 28 23 49 49 H 1.08996 * 110.08592 * 281.32394 * 32 9 7 50 50 H 1.08995 * 110.08540 * 42.89729 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0066 10 6 1.9373 -3.7228 0.0135 11 6 0.7961 -4.7550 -0.0069 12 1 0.6413 -5.1356 1.0027 13 6 1.1366 -5.9039 -0.9221 14 6 1.1155 -5.5325 -2.3889 15 6 -0.2119 -4.9292 -2.8045 16 7 -0.7269 -3.9906 -1.8339 17 6 -1.5615 -3.0389 -2.2970 18 8 -2.1164 -2.2895 -1.5216 19 6 -1.8051 -2.9063 -3.7782 20 1 -1.7395 -3.8883 -4.2467 21 6 -3.1993 -2.3195 -4.0156 22 6 -3.5486 -2.4146 -5.5059 23 6 -2.3980 -1.8501 -6.3018 24 7 -2.3945 -1.4581 -7.5788 25 6 -1.2000 -1.0285 -7.8923 26 7 -0.3993 -1.1379 -6.8070 27 1 0.5376 -0.8923 -6.7541 28 6 -1.1582 -1.6565 -5.8030 29 6 -0.7488 -1.9766 -4.3890 30 6 -0.4367 -3.9715 -0.4396 31 1 -1.3071 -4.3313 0.1092 32 6 -0.1370 -2.5257 0.0137 33 1 -0.4849 0.8400 -0.0004 34 1 2.5645 -3.8470 -0.8693 35 1 2.5359 -3.8508 0.9154 36 1 2.1318 -6.2690 -0.6685 37 1 0.4183 -6.7068 -0.7567 38 1 1.9089 -4.8109 -2.5831 39 1 1.2980 -6.4276 -2.9835 40 1 -0.0818 -4.4149 -3.7566 41 1 -0.9377 -5.7318 -2.9350 42 1 -3.9326 -2.8787 -3.4345 43 1 -3.2111 -1.2745 -3.7056 44 1 -4.4521 -1.8394 -5.7083 45 1 -3.7081 -3.4573 -5.7805 46 1 -0.9015 -0.6497 -8.8586 47 1 -0.6887 -1.0570 -3.8071 48 1 0.2209 -2.4743 -4.3913 49 1 -0.5239 -2.3582 1.0188 50 1 -0.5832 -1.8158 -0.6828 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050179794.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:02 Heat of formation + Delta-G solvation = 37.235536 kcal Electronic energy + Delta-G solvation = -32586.291039 eV Core-core repulsion = 28614.089053 eV Total energy + Delta-G solvation = -3972.201985 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.24720 -42.07478 -39.48955 -37.23407 -36.88735 -34.72524 -34.07013 -33.74263 -31.64403 -30.82807 -30.22831 -28.62161 -27.34015 -25.78334 -24.90930 -24.10638 -23.26456 -22.53189 -22.27009 -20.75092 -19.75153 -19.23737 -18.79803 -18.71222 -17.95566 -17.22614 -16.95227 -16.44271 -16.25135 -15.91863 -15.73673 -15.41651 -15.12936 -15.02321 -14.78399 -14.75503 -14.31584 -14.15568 -13.94333 -13.79475 -13.60538 -13.38315 -13.10589 -13.01718 -12.97823 -12.74484 -12.62797 -12.34662 -12.14088 -12.00458 -11.92839 -11.73907 -11.70924 -11.55826 -11.37431 -11.30370 -10.87821 -10.78497 -10.75621 -10.22789 -9.29123 -9.11712 -8.81517 -7.70623 -5.17498 1.07764 1.39082 1.42003 1.51161 1.65656 2.14360 2.22481 2.31839 2.47547 3.34894 3.40912 3.56883 3.69834 3.71370 3.77394 3.85641 3.91296 4.02775 4.08255 4.10944 4.13092 4.24173 4.29971 4.42482 4.49071 4.56873 4.63464 4.65036 4.70118 4.75724 4.78676 4.89164 4.93638 4.95853 4.99185 5.05384 5.13531 5.17001 5.22864 5.29281 5.36799 5.38395 5.43731 5.48759 5.52622 5.78852 5.89579 6.08374 6.46555 6.56989 6.64175 7.12598 7.13133 7.41817 7.84716 8.46623 9.27163 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009334 B = 0.004833 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.134837 B = 5792.030157 C = 7392.935153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.064 4.064 3 Si 0.971 3.029 4 H -0.284 1.284 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.079 0.921 9 N -0.622 5.622 10 C 0.136 3.864 11 C -0.087 4.087 12 H 0.084 0.916 13 C -0.098 4.098 14 C -0.125 4.125 15 C 0.100 3.900 16 N -0.582 5.582 17 C 0.497 3.503 18 O -0.553 6.553 19 C -0.084 4.084 20 H 0.128 0.872 21 C -0.093 4.093 22 C -0.024 4.024 23 C -0.012 4.012 24 N -0.524 5.524 25 C 0.189 3.811 26 N -0.553 5.553 27 H 0.433 0.567 28 C -0.031 4.031 29 C -0.019 4.019 30 C 0.142 3.858 31 H 0.048 0.952 32 C 0.135 3.865 33 H 0.240 0.760 34 H 0.032 0.968 35 H 0.017 0.983 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.080 0.920 45 H 0.097 0.903 46 H 0.249 0.751 47 H 0.046 0.954 48 H 0.086 0.914 49 H -0.038 1.038 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.438 -13.689 -15.392 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.258 4.258 3 Si 0.800 3.200 4 H -0.211 1.211 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.371 4.371 8 H 0.097 0.903 9 N -0.348 5.348 10 C 0.011 3.989 11 C -0.107 4.107 12 H 0.102 0.898 13 C -0.136 4.136 14 C -0.162 4.162 15 C -0.021 4.021 16 N -0.314 5.314 17 C 0.285 3.715 18 O -0.430 6.430 19 C -0.106 4.106 20 H 0.145 0.855 21 C -0.132 4.132 22 C -0.062 4.062 23 C -0.141 4.141 24 N -0.243 5.243 25 C -0.094 4.094 26 N -0.156 5.156 27 H 0.274 0.726 28 C -0.148 4.148 29 C -0.058 4.058 30 C 0.036 3.964 31 H 0.066 0.934 32 C 0.010 3.990 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.034 0.966 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.099 0.901 45 H 0.115 0.885 46 H 0.265 0.735 47 H 0.065 0.935 48 H 0.105 0.895 49 H -0.020 1.020 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.544 -13.189 -15.472 20.338 hybrid contribution 1.571 1.881 1.441 2.843 sum 1.027 -11.308 -14.031 18.050 Atomic orbital electron populations 1.70240 1.05963 1.24409 1.57572 1.25645 0.96441 1.00775 1.02919 0.85190 0.77666 0.79672 0.77488 1.21136 1.22606 1.19304 1.19350 0.90730 0.83784 1.43257 0.90272 1.44645 1.02444 1.01034 1.86712 1.21507 0.94946 0.84754 0.97722 1.21265 0.92839 0.95617 1.00937 0.89806 1.20555 1.03416 0.95785 0.93860 1.21156 0.95994 1.02143 0.96915 1.21258 0.97168 0.92486 0.91195 1.46236 1.46233 1.31236 1.07665 1.21138 0.79145 0.79688 0.91498 1.90731 1.49490 1.43457 1.59335 1.21297 0.96825 1.02069 0.90423 0.85467 1.21368 0.94637 1.00974 0.96214 1.19924 0.94105 1.01648 0.90504 1.20801 0.94853 1.06696 0.91787 1.69959 1.22140 1.17949 1.14300 1.25843 0.85652 1.03478 0.94427 1.42950 1.14034 1.48565 1.10082 0.72624 1.20724 0.93486 1.08418 0.92187 1.19683 0.98583 0.98883 0.88665 1.20456 0.96768 0.97259 0.81926 0.93396 1.22270 0.83867 0.95287 0.97561 0.95018 0.94960 0.96554 0.89773 0.89947 0.93132 0.86674 0.89711 0.89594 0.90043 0.93732 0.90125 0.88462 0.73476 0.93495 0.89524 1.02009 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.74 10.18 21.65 0.22 -59.52 16 2 C -0.06 -3.81 5.48 84.86 0.47 -3.35 16 3 Si 0.97 47.51 29.55 68.60 2.03 49.54 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.24 -14.03 10.25 84.03 0.86 -13.16 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -33.29 3.39 -695.53 -2.36 -35.64 16 10 C 0.14 5.57 6.74 86.62 0.58 6.16 16 11 C -0.09 -2.85 3.01 -11.43 -0.03 -2.89 16 12 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 13 C -0.10 -2.12 5.09 29.32 0.15 -1.97 16 14 C -0.12 -2.41 5.84 29.59 0.17 -2.24 16 15 C 0.10 2.20 5.41 86.30 0.47 2.67 16 16 N -0.58 -19.55 3.03 -812.98 -2.47 -22.01 16 17 C 0.50 18.77 5.90 87.66 0.52 19.29 16 18 O -0.55 -27.24 13.45 -3.02 -0.04 -27.28 16 19 C -0.08 -2.40 1.63 -11.37 -0.02 -2.42 16 20 H 0.13 2.67 6.29 -2.39 -0.02 2.66 16 21 C -0.09 -2.65 4.63 30.75 0.14 -2.51 16 22 C -0.02 -0.57 6.30 30.02 0.19 -0.38 16 23 C -0.01 -0.33 6.98 41.61 0.29 -0.04 16 24 N -0.52 -14.02 11.25 -187.90 -2.11 -16.13 16 25 C 0.19 3.65 13.05 180.10 2.35 6.00 16 26 N -0.55 -11.09 6.15 -186.45 -1.15 -12.24 16 27 H 0.43 6.15 8.96 -92.71 -0.83 5.32 16 28 C -0.03 -0.82 7.08 41.14 0.29 -0.53 16 29 C -0.02 -0.57 5.44 29.97 0.16 -0.41 16 30 C 0.14 5.66 3.15 46.02 0.14 5.80 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 C 0.14 7.30 4.61 86.80 0.40 7.70 16 33 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 34 H 0.03 1.26 6.71 -2.39 -0.02 1.25 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 37 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.19 7.11 -2.39 -0.02 1.17 16 39 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.67 5.04 -2.39 -0.01 1.66 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 43 H 0.04 1.55 8.11 -2.38 -0.02 1.53 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.25 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.05 1.84 8.11 -2.39 -0.02 1.82 16 48 H 0.09 2.34 7.22 -2.39 -0.02 2.32 16 49 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 50 H 0.12 7.06 3.01 -2.51 -0.01 7.05 16 Total: -1.00 -85.40 373.16 1.40 -84.01 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.14 Total: 21.55 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 7.14 Total: 17.73 kcal Atomic # 7 Polarization: -137.68 SS G_CDS: -7.86 Total: -145.55 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.28 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -85.40 1.40 -84.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050179794.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.242 kcal (2) G-P(sol) polarization free energy of solvation -85.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds