Wall clock time and date at job start Wed Apr 1 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38630 * 120.47362 * 2 1 4 4 C 1.38580 * 118.49012 * 180.02562 * 3 2 1 5 5 C 1.38606 * 119.35126 * 0.02562 * 4 3 2 6 6 N 1.31493 * 120.90114 * 359.97438 * 5 4 3 7 7 C 1.32746 * 121.64207 * 359.97438 * 6 5 4 8 8 C 1.48171 * 119.72179 * 180.02562 * 7 6 5 9 9 O 1.21515 * 120.00123 * 174.05898 * 8 7 6 10 10 N 1.34773 * 119.99936 * 354.05718 * 8 7 6 11 11 C 1.47019 * 125.65035 * 359.69338 * 10 8 7 12 12 C 1.54335 * 107.27022 * 178.85281 * 11 10 8 13 13 C 1.55158 * 103.01746 * 338.13921 * 12 11 10 14 14 H 1.09006 * 111.03832 * 277.22472 * 13 12 11 15 15 N 1.46897 * 111.00802 * 153.38217 * 13 12 11 16 16 C 1.46898 * 111.00494 * 185.24631 * 15 13 12 17 17 C 1.53239 * 109.33968 * 172.74457 * 16 15 13 18 18 N 1.47083 * 108.52092 * 53.83553 * 17 16 15 19 19 C 1.36930 * 120.88130 * 128.83538 * 18 17 16 20 20 H 1.08004 * 119.99655 * 208.01206 * 19 18 17 21 21 C 1.38806 * 120.00246 * 28.00812 * 19 18 17 22 22 N 1.31619 * 120.00040 * 14.42613 * 21 19 18 23 23 Si 1.86798 * 120.00154 * 194.42611 * 21 19 18 24 24 H 1.48498 * 109.47211 * 89.99993 * 23 21 19 25 25 H 1.48500 * 109.47163 * 209.99925 * 23 21 19 26 26 H 1.48501 * 109.47110 * 329.99945 * 23 21 19 27 27 C 1.47082 * 118.23220 * 308.81283 * 18 17 16 28 28 C 1.46901 * 110.99675 * 60.94672 * 15 13 12 29 29 C 1.47429 * 125.64892 * 180.02562 * 10 8 7 30 30 H 1.08996 * 109.47056 * 262.94065 * 1 2 3 31 31 H 1.09000 * 109.46820 * 22.93217 * 1 2 3 32 32 H 1.08996 * 109.47547 * 142.93403 * 1 2 3 33 33 H 1.07997 * 120.75121 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.32129 * 180.02562 * 4 3 2 35 35 H 1.07996 * 119.54789 * 180.27381 * 5 4 3 36 36 H 1.09006 * 109.88091 * 298.39771 * 11 10 8 37 37 H 1.09005 * 109.88483 * 59.55877 * 11 10 8 38 38 H 1.08997 * 110.84742 * 219.67605 * 12 11 10 39 39 H 1.08996 * 110.52128 * 96.44867 * 12 11 10 40 40 H 1.08999 * 109.49372 * 292.71448 * 16 15 13 41 41 H 1.09009 * 109.48887 * 52.78916 * 16 15 13 42 42 H 1.09003 * 109.62843 * 294.12533 * 17 16 15 43 43 H 1.08997 * 109.78633 * 173.63999 * 17 16 15 44 44 H 0.97000 * 119.99915 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.62837 * 291.47351 * 27 18 17 46 46 H 1.09004 * 109.78174 * 170.99153 * 27 18 17 47 47 H 1.09001 * 109.49313 * 307.21619 * 28 15 13 48 48 H 1.08993 * 109.49646 * 67.29927 * 28 15 13 49 49 H 1.09001 * 110.36579 * 322.93309 * 29 10 8 50 50 H 1.08999 * 110.36802 * 85.14066 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2101 1.1948 0.0000 4 6 3.5951 1.1468 -0.0005 5 6 4.2322 -0.0841 -0.0016 6 7 3.5407 -1.2025 -0.0016 7 6 2.2132 -1.2004 -0.0001 8 6 1.4766 -2.4860 0.0004 9 8 0.2665 -2.4929 0.1107 10 7 2.1487 -3.6478 -0.1215 11 6 3.6053 -3.7838 -0.2682 12 6 3.9193 -5.2930 -0.3432 13 6 2.6785 -5.9418 0.3253 14 1 2.7726 -5.9388 1.4113 15 7 2.4616 -7.3048 -0.1778 16 6 1.2185 -7.8731 0.3603 17 6 0.9358 -9.2146 -0.3242 18 7 2.1234 -10.0708 -0.1825 19 6 2.0157 -11.3476 0.3003 20 1 2.8481 -11.8011 0.8180 21 6 0.8369 -12.0591 0.1244 22 7 -0.0651 -11.6359 -0.7356 23 14 0.5306 -13.6171 1.1083 24 1 -0.1578 -13.2732 2.3783 25 1 -0.3212 -14.5421 0.3183 26 1 1.8274 -14.2747 1.4106 27 6 3.4295 -9.5191 -0.5738 28 6 3.6140 -8.1656 0.1205 29 6 1.5446 -4.9925 -0.1367 30 1 -0.3633 -0.1263 1.0198 31 1 -0.3633 0.9465 -0.4004 32 1 -0.3634 -0.8200 -0.6194 33 1 1.6902 2.1414 0.0004 34 1 4.1722 2.0597 -0.0001 35 1 5.3114 -0.1252 0.0025 36 1 3.9335 -3.2890 -1.1824 37 1 4.1073 -3.3449 0.5941 38 1 4.8254 -5.5288 0.2148 39 1 4.0099 -5.6134 -1.3810 40 1 1.3242 -8.0276 1.4341 41 1 0.3929 -7.1869 0.1707 42 1 0.7274 -9.0496 -1.3813 43 1 0.0790 -9.6961 0.1472 44 1 -0.8890 -12.1329 -0.8582 45 1 3.4607 -9.3834 -1.6549 46 1 4.2241 -10.1994 -0.2671 47 1 4.5258 -7.6917 -0.2429 48 1 3.6863 -8.3162 1.1976 49 1 0.7048 -5.0390 0.5567 50 1 1.2183 -5.2505 -1.1442 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052005509.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:31:01 Heat of formation + Delta-G solvation = 53.778789 kcal Electronic energy + Delta-G solvation = -30343.829200 eV Core-core repulsion = 26372.344584 eV Total energy + Delta-G solvation = -3971.484616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.11321 -39.61088 -38.33539 -36.82075 -34.34315 -33.72150 -32.48531 -31.48104 -30.69474 -29.67047 -28.62044 -27.67105 -26.04855 -24.89099 -23.39541 -22.93067 -22.49299 -22.01235 -20.37032 -19.93935 -19.11534 -17.76334 -17.10393 -16.92119 -16.25628 -15.98702 -15.70666 -15.30209 -14.80586 -14.51150 -14.25987 -14.09404 -13.93119 -13.70216 -13.53773 -13.41998 -13.33965 -13.05468 -12.98353 -12.90959 -12.62888 -12.37015 -12.25331 -12.23756 -11.62056 -11.40150 -11.13877 -10.97216 -10.81248 -10.72429 -10.39751 -10.29645 -10.22340 -10.15472 -9.99278 -9.71598 -9.58725 -9.56163 -9.38288 -8.61894 -8.48791 -7.85924 -6.62453 -5.75372 -3.19071 0.32490 0.81665 2.54742 2.76335 3.39300 3.45877 3.47168 3.51870 3.79594 4.28528 4.30001 4.36936 4.51901 4.52587 4.54656 4.66913 4.74573 4.96421 5.15381 5.17602 5.31005 5.36042 5.39543 5.43571 5.50816 5.52869 5.62366 5.71508 5.77568 5.84223 5.87993 5.91886 5.96631 5.99188 6.04778 6.13904 6.20035 6.23458 6.27533 6.35920 6.36948 6.55157 6.72153 6.94850 7.26354 7.32916 7.44125 7.60357 7.67282 7.73147 7.83754 8.00695 8.47069 9.24096 9.86740 10.45748 11.33172 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026895 B = 0.002142 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.848738 B =13069.773706 C =13866.994181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 C -0.088 4.088 4 C -0.147 4.147 5 C 0.086 3.914 6 N -0.449 5.449 7 C 0.077 3.923 8 C 0.580 3.420 9 O -0.530 6.530 10 N -0.597 5.597 11 C 0.121 3.879 12 C -0.129 4.129 13 C 0.069 3.931 14 H 0.050 0.950 15 N -0.521 5.521 16 C 0.033 3.967 17 C 0.179 3.821 18 N -0.596 5.596 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.045 3.955 29 C 0.116 3.884 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.025 0.975 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.027 0.973 49 H 0.077 0.923 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.631 27.212 1.239 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.075 4.075 3 C -0.114 4.114 4 C -0.167 4.167 5 C -0.074 4.074 6 N -0.160 5.160 7 C -0.060 4.060 8 C 0.368 3.632 9 O -0.407 6.407 10 N -0.329 5.329 11 C -0.002 4.002 12 C -0.167 4.167 13 C -0.040 4.040 14 H 0.068 0.932 15 N -0.246 5.246 16 C -0.096 4.096 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.022 3.978 28 C -0.084 4.084 29 C -0.007 4.007 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.179 0.821 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.046 0.954 49 H 0.096 0.904 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.155 26.336 0.751 27.580 hybrid contribution -0.339 0.107 1.394 1.439 sum 7.816 26.443 2.145 27.657 Atomic orbital electron populations 1.21066 0.88900 1.03361 1.04142 1.20959 0.98509 0.92303 0.95726 1.21561 0.94191 0.98076 0.97569 1.22377 0.95271 0.99891 0.99138 1.22834 1.00564 0.87397 0.96577 1.67819 1.07054 1.31367 1.09716 1.20943 0.89908 0.93384 1.01809 1.17486 0.86082 0.82044 0.77585 1.90756 1.12922 1.86142 1.50927 1.48248 1.09023 1.05546 1.70067 1.22107 0.79725 0.95868 1.02517 1.22817 0.97788 0.93368 1.02746 1.22733 0.94385 0.90133 0.96790 0.93218 1.62011 1.03942 0.99809 1.58839 1.22956 0.90214 0.99245 0.97212 1.20868 0.91004 0.85463 0.97404 1.44106 1.01509 1.11634 1.74650 1.19188 1.00213 0.89995 1.28681 0.91724 1.25077 0.98853 0.97902 0.97905 1.70001 1.09691 1.40545 1.34627 0.86267 0.77840 0.82944 0.79558 1.21514 1.21730 1.20492 1.20972 0.89516 0.91046 0.96225 1.22625 0.91996 0.95422 0.98353 1.22290 0.96038 0.79542 1.02785 0.90259 0.92157 0.88196 0.84165 0.84295 0.82065 0.91049 0.90417 0.90291 0.89477 0.95617 0.91960 0.95517 0.89256 0.93602 0.95670 0.92651 0.91773 0.95450 0.90440 0.89838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.72 36.01 0.31 -0.81 16 2 C -0.07 -0.71 5.93 -104.09 -0.62 -1.33 16 3 C -0.09 -0.62 9.83 -39.31 -0.39 -1.00 16 4 C -0.15 -0.87 10.11 -39.32 -0.40 -1.26 16 5 C 0.09 0.62 11.18 -17.56 -0.20 0.43 16 6 N -0.45 -4.62 6.90 -9.80 -0.07 -4.69 16 7 C 0.08 0.92 6.71 -83.01 -0.56 0.36 16 8 C 0.58 8.23 7.78 -12.18 -0.09 8.13 16 9 O -0.53 -8.56 13.58 5.35 0.07 -8.49 16 10 N -0.60 -8.07 3.33 -171.48 -0.57 -8.64 16 11 C 0.12 1.36 5.41 -3.06 -0.02 1.34 16 12 C -0.13 -1.49 5.28 -24.89 -0.13 -1.62 16 13 C 0.07 0.99 2.72 -65.55 -0.18 0.81 16 14 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 15 N -0.52 -9.03 4.53 -223.76 -1.01 -10.05 16 16 C 0.03 0.64 5.49 -3.70 -0.02 0.62 16 17 C 0.18 4.34 5.40 -3.60 -0.02 4.32 16 18 N -0.60 -15.13 3.03 -172.01 -0.52 -15.65 16 19 C -0.25 -6.94 9.63 -15.06 -0.15 -7.08 16 20 H 0.07 1.75 7.87 -52.48 -0.41 1.34 16 21 C 0.00 0.03 4.99 -17.43 -0.09 -0.06 16 22 N -0.90 -26.44 11.09 55.49 0.62 -25.83 16 23 Si 0.90 21.87 29.58 -169.99 -5.03 16.84 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.14 6.69 -3.60 -0.02 3.12 16 28 C 0.05 0.79 5.47 -3.70 -0.02 0.77 16 29 C 0.12 1.68 5.37 -2.52 -0.01 1.66 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.10 1.18 5.89 -51.93 -0.31 0.87 16 33 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 34 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 35 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 37 H 0.08 0.84 7.25 -51.93 -0.38 0.47 16 38 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.13 6.83 -51.92 -0.35 0.77 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 2.41 6.13 -51.93 -0.32 2.09 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 47 H 0.06 0.94 6.83 -51.93 -0.35 0.58 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 50 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -32.12 387.88 -11.21 -43.33 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.95 Total: -1.08 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.59 Total: 8.40 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -1.56 Total: -64.85 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.12 -11.21 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052005509.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.113 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds