Wall clock time and date at job start Wed Apr 1 2020 03:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31694 * 119.71774 * 2 1 4 4 C 1.31920 * 121.88320 * 180.02562 * 3 2 1 5 5 C 1.38352 * 121.07821 * 359.97438 * 4 3 2 6 6 C 1.38358 * 119.30536 * 359.74705 * 5 4 3 7 7 C 1.39515 * 119.71558 * 180.02562 * 2 1 3 8 8 C 1.47837 * 120.56336 * 0.02562 * 7 2 1 9 9 O 1.21556 * 119.99946 * 312.04819 * 8 7 2 10 10 N 1.34774 * 120.00695 * 132.32057 * 8 7 2 11 11 C 1.47027 * 125.64417 * 4.51157 * 10 8 7 12 12 C 1.54333 * 107.26454 * 178.84965 * 11 10 8 13 13 C 1.55156 * 103.02108 * 338.14386 * 12 11 10 14 14 H 1.09001 * 111.03258 * 277.21632 * 13 12 11 15 15 N 1.46905 * 111.00292 * 153.38176 * 13 12 11 16 16 C 1.46900 * 110.99832 * 186.74357 * 15 13 12 17 17 C 1.53237 * 109.33753 * 172.74303 * 16 15 13 18 18 N 1.47076 * 108.51839 * 53.83538 * 17 16 15 19 19 C 1.36938 * 120.88312 * 128.84088 * 18 17 16 20 20 H 1.08005 * 120.00078 * 210.74200 * 19 18 17 21 21 C 1.38815 * 120.00294 * 30.72955 * 19 18 17 22 22 N 1.31615 * 119.99619 * 9.48914 * 21 19 18 23 23 Si 1.86793 * 120.00242 * 189.48766 * 21 19 18 24 24 H 1.48507 * 109.47111 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47096 * 119.99925 * 23 21 19 26 26 H 1.48497 * 109.47492 * 240.00230 * 23 21 19 27 27 C 1.47074 * 118.23771 * 308.80631 * 18 17 16 28 28 C 1.46900 * 110.99859 * 62.44124 * 15 13 12 29 29 C 1.47416 * 125.65508 * 184.82282 * 10 8 7 30 30 H 1.09003 * 109.47236 * 273.82455 * 1 2 3 31 31 H 1.09001 * 109.47243 * 33.82418 * 1 2 3 32 32 H 1.08996 * 109.46981 * 153.82425 * 1 2 3 33 33 H 1.07995 * 119.46627 * 180.02562 * 4 3 2 34 34 H 1.07997 * 120.35121 * 180.02562 * 5 4 3 35 35 H 1.07994 * 120.86151 * 180.27967 * 6 5 4 36 36 H 1.09004 * 109.88489 * 298.39961 * 11 10 8 37 37 H 1.09006 * 109.88119 * 59.56436 * 11 10 8 38 38 H 1.09003 * 110.85220 * 219.67117 * 12 11 10 39 39 H 1.09002 * 110.51162 * 96.45357 * 12 11 10 40 40 H 1.08994 * 109.49464 * 292.71068 * 16 15 13 41 41 H 1.08999 * 109.49143 * 52.78750 * 16 15 13 42 42 H 1.08996 * 109.63174 * 294.12028 * 17 16 15 43 43 H 1.09004 * 109.78492 * 173.63441 * 17 16 15 44 44 H 0.97000 * 120.00000 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.63561 * 291.47858 * 27 18 17 46 46 H 1.09003 * 109.79329 * 170.99207 * 27 18 17 47 47 H 1.08989 * 109.49553 * 307.21054 * 28 15 13 48 48 H 1.09001 * 109.48856 * 67.29980 * 28 15 13 49 49 H 1.08999 * 110.36834 * 322.93303 * 29 10 8 50 50 H 1.09000 * 110.36818 * 85.14068 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.2365 0.0365 -0.0005 6 6 3.5987 -1.1913 0.0053 7 6 2.1986 -1.2117 -0.0005 8 6 1.4656 -2.4956 -0.0017 9 8 0.5517 -2.6744 0.7796 10 7 1.8142 -3.4699 -0.8651 11 6 2.9560 -3.4266 -1.7904 12 6 2.9773 -4.7673 -2.5546 13 6 2.1780 -5.7145 -1.6213 14 1 2.8140 -6.1131 -0.8308 15 7 1.5500 -6.8004 -2.3858 16 6 0.6654 -7.6030 -1.5307 17 6 -0.1052 -8.6051 -2.3967 18 7 0.8626 -9.3783 -3.1897 19 6 0.8252 -10.7471 -3.2042 20 1 1.7371 -11.3109 -3.3355 21 6 -0.3845 -11.4102 -3.0500 22 7 -1.5135 -10.7342 -3.0773 23 14 -0.4101 -13.2617 -2.8040 24 1 0.9810 -13.7813 -2.8113 25 1 -1.0498 -13.5792 -1.5020 26 1 -1.1818 -13.8965 -3.9025 27 6 1.8710 -8.6424 -3.9672 28 6 2.5639 -7.6387 -3.0394 29 6 1.1102 -4.7528 -1.0429 30 1 -0.3634 0.0685 1.0254 31 1 -0.3634 0.8537 -0.5720 32 1 -0.3633 -0.9222 -0.4533 33 1 3.9734 2.1532 -0.0001 34 1 5.3151 0.0910 -0.0005 35 1 4.1660 -2.1103 0.0100 36 1 2.8345 -2.6002 -2.4908 37 1 3.8831 -3.3068 -1.2298 38 1 3.9992 -5.1244 -2.6832 39 1 2.4792 -4.6653 -3.5188 40 1 1.2619 -8.1417 -0.7944 41 1 -0.0391 -6.9472 -1.0191 42 1 -0.7803 -8.0693 -3.0639 43 1 -0.6783 -9.2790 -1.7599 44 1 -2.3589 -11.1975 -2.9692 45 1 1.3859 -8.1101 -4.7855 46 1 2.6075 -9.3384 -4.3689 47 1 3.2362 -7.0090 -3.6219 48 1 3.1339 -8.1770 -2.2821 49 1 0.7467 -5.1222 -0.0840 50 1 0.2824 -4.6376 -1.7426 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052073664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:29 Heat of formation + Delta-G solvation = 24.894720 kcal Electronic energy + Delta-G solvation = -30337.287814 eV Core-core repulsion = 26364.550691 eV Total energy + Delta-G solvation = -3972.737123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.94977 -40.68736 -39.64032 -38.15154 -35.88143 -34.12752 -33.75083 -33.14874 -32.08784 -31.23344 -29.89920 -28.82009 -27.68579 -25.92845 -24.73646 -24.53745 -23.45056 -23.16417 -21.62810 -20.81821 -20.73698 -18.83732 -18.54505 -17.83829 -17.70528 -17.25689 -16.86541 -16.53706 -16.06790 -15.74311 -15.49398 -15.45414 -15.28016 -15.06690 -14.90411 -14.84093 -14.70019 -14.11722 -13.96379 -13.92601 -13.64159 -13.48268 -13.18927 -13.15958 -13.06237 -13.05279 -12.73321 -12.55776 -12.47718 -12.21061 -12.00777 -11.90544 -11.78938 -11.45900 -11.38465 -11.29194 -10.93931 -10.61308 -10.50641 -10.03287 -9.76551 -9.31815 -8.62380 -7.87190 -5.38257 -0.27504 0.17580 1.45395 1.46486 1.48357 1.57020 1.75387 2.49390 2.70036 2.93437 3.16793 3.29724 3.30027 3.55309 3.63144 3.70287 3.71064 3.83471 4.05162 4.07301 4.18779 4.26856 4.34391 4.38013 4.46427 4.51269 4.55077 4.55701 4.58285 4.62185 4.63803 4.71245 4.74957 4.85541 4.90396 4.95371 5.02547 5.04315 5.06503 5.09752 5.12216 5.21920 5.25072 5.39361 5.61388 5.61863 5.70610 6.12614 6.23661 6.33182 6.40140 6.87755 6.90644 7.14341 7.83775 8.38933 9.19046 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027349 B = 0.002125 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.550090 B =13171.351791 C =13806.909403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.159 3.841 3 N -0.510 5.510 4 C 0.117 3.883 5 C -0.168 4.168 6 C -0.042 4.042 7 C -0.194 4.194 8 C 0.577 3.423 9 O -0.571 6.571 10 N -0.608 5.608 11 C 0.099 3.901 12 C -0.114 4.114 13 C 0.073 3.927 14 H 0.056 0.944 15 N -0.527 5.527 16 C 0.051 3.949 17 C 0.188 3.812 18 N -0.616 5.616 19 C -0.260 4.260 20 H 0.068 0.932 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.143 3.857 28 C 0.058 3.942 29 C 0.118 3.882 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.183 0.817 35 H 0.163 0.837 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.019 0.981 41 H 0.072 0.928 42 H -0.003 1.003 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.017 0.983 46 H 0.062 0.938 47 H 0.105 0.895 48 H 0.024 0.976 49 H 0.060 0.940 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.105 23.731 3.801 29.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.021 3.979 3 N -0.220 5.220 4 C -0.040 4.040 5 C -0.187 4.187 6 C -0.068 4.068 7 C -0.199 4.199 8 C 0.367 3.633 9 O -0.451 6.451 10 N -0.341 5.341 11 C -0.023 4.023 12 C -0.151 4.151 13 C -0.037 4.037 14 H 0.074 0.926 15 N -0.252 5.252 16 C -0.079 4.079 17 C 0.062 3.938 18 N -0.340 5.340 19 C -0.391 4.391 20 H 0.086 0.914 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.017 3.983 28 C -0.071 4.071 29 C -0.005 4.005 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.210 0.790 34 H 0.200 0.800 35 H 0.180 0.820 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.037 0.963 41 H 0.090 0.910 42 H 0.015 0.985 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.035 0.965 46 H 0.081 0.919 47 H 0.123 0.877 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.707 24.593 3.885 29.438 hybrid contribution -0.116 -2.482 0.817 2.616 sum 15.591 22.111 4.702 27.461 Atomic orbital electron populations 1.20726 0.88616 1.03070 1.03606 1.21395 0.97384 0.87221 0.91862 1.67619 1.11856 1.28101 1.14424 1.23642 0.88481 1.00935 0.90912 1.22511 1.03675 0.91575 1.00931 1.22132 0.91532 1.00946 0.92193 1.20611 0.96036 0.93051 1.10214 1.18083 0.82746 0.83195 0.79325 1.90796 1.32466 1.81432 1.40437 1.48389 1.30786 1.16646 1.38303 1.22458 0.88682 0.99136 0.91977 1.22734 1.01942 0.91931 0.98536 1.22729 0.94224 0.91246 0.95455 0.92648 1.61922 1.20302 1.11955 1.31057 1.22571 0.95838 0.95059 0.94405 1.20572 0.90118 0.90852 0.92267 1.44363 1.35553 1.02015 1.52050 1.19553 0.92287 0.82844 1.44393 0.91415 1.25959 0.95224 1.02171 1.01462 1.70144 0.97092 1.35899 1.55269 0.85159 0.77891 0.80357 0.76755 1.18856 1.21867 1.21865 1.21165 0.91300 0.93076 0.92733 1.22483 0.92866 0.94605 0.97110 1.22099 0.95463 0.82648 1.00318 0.90101 0.89351 0.91982 0.78988 0.80007 0.81973 0.89768 0.88413 0.87145 0.89521 0.96269 0.91014 0.98467 0.92709 0.94136 0.96516 0.91929 0.87658 0.95752 0.92193 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.27 9.32 71.24 0.66 -1.60 16 2 C 0.16 3.48 6.82 42.89 0.29 3.77 16 3 N -0.51 -9.84 10.26 -182.86 -1.88 -11.71 16 4 C 0.12 1.34 11.17 84.71 0.95 2.29 16 5 C -0.17 -1.35 10.10 22.33 0.23 -1.12 16 6 C -0.04 -0.52 8.65 22.73 0.20 -0.33 16 7 C -0.19 -3.96 5.41 -19.99 -0.11 -4.07 16 8 C 0.58 14.99 6.51 86.78 0.57 15.55 16 9 O -0.57 -19.54 15.77 -3.89 -0.06 -19.60 16 10 N -0.61 -13.57 3.33 -815.19 -2.71 -16.28 16 11 C 0.10 1.36 5.76 86.73 0.50 1.86 16 12 C -0.11 -1.76 5.36 31.79 0.17 -1.59 16 13 C 0.07 1.73 2.72 46.30 0.13 1.85 16 14 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 15 N -0.53 -16.68 4.53 -861.92 -3.90 -20.58 16 16 C 0.05 1.96 5.47 86.38 0.47 2.43 16 17 C 0.19 9.34 5.36 86.35 0.46 9.80 16 18 N -0.62 -31.17 3.03 -698.13 -2.11 -33.29 16 19 C -0.26 -14.35 9.63 84.03 0.81 -13.54 16 20 H 0.07 3.61 7.85 -2.91 -0.02 3.58 16 21 C -0.05 -2.99 5.09 84.86 0.43 -2.56 16 22 N -0.94 -56.29 11.00 21.65 0.24 -56.05 16 23 Si 0.97 45.14 29.56 68.60 2.03 47.16 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 27 C 0.14 5.73 6.69 86.35 0.58 6.31 16 28 C 0.06 1.79 5.49 86.39 0.47 2.26 16 29 C 0.12 3.12 5.32 86.85 0.46 3.58 16 30 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 1.54 6.45 -2.39 -0.02 1.53 16 33 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.16 1.24 6.05 -2.91 -0.02 1.22 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 0.80 5.91 -2.38 -0.01 0.79 16 38 H 0.11 1.16 7.94 -2.39 -0.02 1.14 16 39 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.07 2.60 6.78 -2.39 -0.02 2.59 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.05 3.08 6.18 -2.39 -0.01 3.07 16 44 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 45 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.06 2.39 7.96 -2.39 -0.02 2.37 16 47 H 0.11 2.39 6.88 -2.39 -0.02 2.38 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.06 1.81 7.69 -2.39 -0.02 1.79 16 50 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -75.70 389.19 -0.20 -75.90 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.94 Total: 9.56 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: 7.27 Total: 24.89 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -10.37 Total: -137.91 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.06 Total: -19.60 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -75.70 -0.20 -75.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052073664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.793 kcal (2) G-P(sol) polarization free energy of solvation -75.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds