Wall clock time and date at job start Wed Apr 1 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99831 * 2 1 4 4 H 1.48496 * 109.47788 * 240.00137 * 3 2 1 5 5 H 1.48504 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47015 * 119.99923 * 3 2 1 7 7 C 1.38811 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00170 * 164.16409 * 7 2 1 9 9 N 1.36942 * 119.99895 * 343.89690 * 7 2 1 10 10 C 1.46927 * 120.62732 * 324.26041 * 9 7 2 11 11 C 1.52760 * 109.00423 * 233.58486 * 10 9 7 12 12 C 1.53042 * 109.38644 * 305.58740 * 11 10 9 13 13 C 1.53041 * 109.53417 * 61.24383 * 12 11 10 14 14 H 1.09000 * 109.50033 * 58.58629 * 13 12 11 15 15 C 1.53001 * 109.52255 * 178.66887 * 13 12 11 16 16 H 1.08998 * 109.50089 * 59.85293 * 15 13 12 17 17 C 1.53038 * 109.49636 * 299.78526 * 15 13 12 18 18 C 1.53043 * 109.53527 * 178.68422 * 17 15 13 19 19 C 1.53187 * 109.31250 * 61.36863 * 18 17 15 20 20 N 1.46924 * 108.77630 * 305.35986 * 19 18 17 21 21 C 1.34769 * 120.63204 * 233.61167 * 20 19 18 22 22 O 1.21520 * 120.00247 * 181.24280 * 21 20 19 23 23 C 1.48131 * 120.00226 * 1.23967 * 21 20 19 24 24 C 1.40121 * 121.14700 * 148.23810 * 23 21 20 25 25 C 1.38503 * 117.82144 * 179.74159 * 24 23 21 26 26 N 1.31914 * 119.97129 * 0.54278 * 25 24 23 27 27 N 1.28281 * 122.51359 * 359.71310 * 26 25 24 28 28 C 1.31926 * 122.32843 * 0.02562 * 27 26 25 29 29 C 1.46933 * 118.76204 * 53.59149 * 20 19 18 30 30 C 1.46922 * 120.62977 * 144.54421 * 9 7 2 31 31 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58768 * 353.42006 * 10 9 7 33 33 H 1.08995 * 109.58370 * 113.85010 * 10 9 7 34 34 H 1.09002 * 109.56099 * 185.55231 * 11 10 9 35 35 H 1.09001 * 109.38962 * 65.51949 * 11 10 9 36 36 H 1.08994 * 109.46001 * 301.22217 * 12 11 10 37 37 H 1.09001 * 109.46107 * 181.25689 * 12 11 10 38 38 H 1.08998 * 109.45970 * 298.70540 * 17 15 13 39 39 H 1.09000 * 109.45736 * 58.67891 * 17 15 13 40 40 H 1.09006 * 109.49474 * 181.31694 * 18 17 15 41 41 H 1.08997 * 109.49818 * 301.41332 * 18 17 15 42 42 H 1.08997 * 109.58844 * 65.14966 * 19 18 17 43 43 H 1.09005 * 109.58764 * 185.43058 * 19 18 17 44 44 H 1.08004 * 121.08277 * 359.97218 * 24 23 21 45 45 H 1.08001 * 120.01100 * 180.25677 * 25 24 23 46 46 H 1.07999 * 120.17175 * 180.02562 * 28 27 26 47 47 H 1.08997 * 109.61469 * 186.64086 * 29 20 19 48 48 H 1.09002 * 109.56215 * 66.21519 * 29 20 19 49 49 H 1.09005 * 109.58127 * 246.15320 * 30 9 7 50 50 H 1.09004 * 109.59084 * 6.57237 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2197 -0.2558 9 7 1.3659 -2.3650 0.3279 10 6 0.3198 -2.3754 1.3595 11 6 0.6612 -3.4370 2.4035 12 6 0.8722 -4.7839 1.7081 13 6 2.0415 -4.6755 0.7267 14 1 2.9414 -4.3770 1.2645 15 6 2.2735 -6.0310 0.0561 16 1 1.3732 -6.3302 -0.4807 17 6 2.6044 -7.0782 1.1219 18 6 2.8043 -8.4413 0.4553 19 6 3.9801 -8.3592 -0.5232 20 7 3.7361 -7.2574 -1.4641 21 6 3.7802 -7.4681 -2.7945 22 8 3.5990 -6.5439 -3.5625 23 6 4.0496 -8.8263 -3.3208 24 6 3.4936 -9.2575 -4.5326 25 6 3.7956 -10.5390 -4.9626 26 7 4.5748 -11.3129 -4.2318 27 7 5.0827 -10.9261 -3.1191 28 6 4.8621 -9.7237 -2.6230 29 6 3.4427 -5.9214 -0.9277 30 6 1.7119 -3.6269 -0.3403 31 1 -0.4850 0.8400 0.0004 32 1 0.2687 -1.3974 1.8380 33 1 -0.6412 -2.6117 0.9029 34 1 -0.1565 -3.5213 3.1193 35 1 1.5739 -3.1504 2.9260 36 1 -0.0327 -5.0584 1.1660 37 1 1.0940 -5.5470 2.4542 38 1 3.5181 -6.7908 1.6420 39 1 1.7839 -7.1406 1.8367 40 1 3.0170 -9.1912 1.2173 41 1 1.8994 -8.7180 -0.0856 42 1 4.9017 -8.1718 0.0278 43 1 4.0661 -9.2978 -1.0707 44 1 2.8536 -8.6104 -5.1140 45 1 3.3895 -10.9061 -5.8936 46 1 5.3079 -9.4342 -1.6829 47 1 3.1723 -5.2508 -1.7433 48 1 4.3207 -5.5350 -0.4101 49 1 0.8666 -3.9673 -0.9383 50 1 2.5790 -3.4744 -0.9830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053041124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:59 Heat of formation + Delta-G solvation = 55.520517 kcal Electronic energy + Delta-G solvation = -30785.900942 eV Core-core repulsion = 26814.491853 eV Total energy + Delta-G solvation = -3971.409089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.81720 -40.24793 -38.51065 -36.96792 -34.52731 -33.54774 -33.08706 -32.44461 -31.74486 -30.38144 -28.49943 -26.87228 -25.36992 -25.27561 -24.60102 -23.53128 -22.18624 -21.45147 -20.56075 -19.72612 -19.08195 -18.59454 -17.58816 -17.16226 -16.66364 -16.25057 -15.66099 -15.32025 -15.06589 -14.81436 -14.65527 -14.48273 -14.05874 -13.97661 -13.71664 -13.60529 -13.30799 -13.15208 -13.08723 -12.57760 -12.46432 -12.21534 -11.73239 -11.48860 -11.42798 -11.12574 -10.98981 -10.90855 -10.84141 -10.81994 -10.65965 -10.58349 -10.33097 -10.30253 -10.19093 -10.14488 -9.91746 -9.86554 -9.52352 -9.29778 -8.86614 -8.44964 -6.53487 -5.78017 -3.27819 -0.06154 0.35574 2.31717 2.53732 3.11190 3.38673 3.43959 3.45261 3.56710 3.78262 3.93529 4.06306 4.38836 4.39858 4.50250 4.61877 4.70772 4.78936 4.85875 5.03159 5.04524 5.14362 5.30524 5.35272 5.36384 5.44653 5.54396 5.58454 5.60118 5.62892 5.66325 5.78283 5.83353 5.88683 6.01299 6.07625 6.15920 6.24359 6.39298 6.41507 6.45342 6.63527 6.70180 6.84415 6.89180 7.01043 7.04002 7.35391 7.60217 7.73118 7.82837 8.15482 8.51588 9.23756 9.85230 10.47350 11.29869 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002571 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.954944 B =10888.866707 C =11934.006593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.011 3.989 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.060 0.940 9 N -0.589 5.589 10 C 0.174 3.826 11 C -0.142 4.142 12 C -0.101 4.101 13 C -0.096 4.096 14 H 0.068 0.932 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.117 4.117 18 C -0.134 4.134 19 C 0.073 3.927 20 N -0.597 5.597 21 C 0.558 3.442 22 O -0.517 6.517 23 C -0.124 4.124 24 C -0.062 4.062 25 C 0.041 3.959 26 N -0.232 5.232 27 N -0.242 5.242 28 C 0.051 3.949 29 C 0.115 3.885 30 C 0.152 3.848 31 H 0.254 0.746 32 H 0.070 0.930 33 H 0.018 0.982 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.163 0.837 45 H 0.181 0.819 46 H 0.193 0.807 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.015 0.985 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 -21.878 -1.188 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.189 4.189 3 Si 0.729 3.271 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.311 5.311 10 C 0.049 3.951 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.117 4.117 14 H 0.087 0.913 15 C -0.112 4.112 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.172 4.172 19 C -0.049 4.049 20 N -0.329 5.329 21 C 0.344 3.656 22 O -0.393 6.393 23 C -0.138 4.138 24 C -0.092 4.092 25 C -0.123 4.123 26 N -0.074 5.074 27 N -0.084 5.084 28 C -0.113 4.113 29 C -0.006 4.006 30 C 0.025 3.975 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.180 0.820 45 H 0.198 0.802 46 H 0.209 0.791 47 H 0.121 0.879 48 H 0.092 0.908 49 H 0.033 0.967 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.740 -22.667 -1.439 23.691 hybrid contribution -0.414 2.317 -0.087 2.355 sum 6.325 -20.350 -1.526 21.365 Atomic orbital electron populations 1.70032 1.05391 1.25684 1.52905 1.25221 0.95210 0.98574 0.99887 0.86430 0.79033 0.83408 0.78217 1.20728 1.21632 1.20939 1.19026 0.91906 0.84630 1.43408 0.92233 1.43904 1.43578 1.03305 1.40306 1.20565 0.90296 0.96453 0.87830 1.22107 1.00294 0.96666 0.99105 1.21447 0.97720 0.97233 0.97456 1.21668 0.98751 0.93237 0.97999 0.91338 1.21530 0.97719 0.96268 0.95666 0.90968 1.21661 1.02333 0.93483 0.98008 1.21932 0.98181 0.98668 0.98441 1.22687 0.99479 0.90579 0.92174 1.48040 1.68898 1.11404 1.04536 1.17943 0.78009 0.87101 0.82561 1.90861 1.48832 1.43187 1.56400 1.21268 0.99606 0.96170 0.96780 1.22643 0.96155 0.96594 0.93804 1.24410 0.95467 0.91391 1.01037 1.72891 1.04901 1.29591 0.99990 1.73138 1.15625 1.14068 1.05521 1.25151 0.95001 0.90980 1.00148 1.21934 0.98216 0.82036 0.98451 1.20973 0.97636 0.86682 0.92175 0.93594 0.91107 0.96420 0.93455 0.92833 0.92940 0.93493 0.91642 0.90920 0.90502 0.91514 0.90150 0.88239 0.81983 0.80155 0.79076 0.87936 0.90784 0.96662 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.74 55.49 0.65 -25.64 16 2 C 0.01 0.31 4.88 -17.43 -0.09 0.22 16 3 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.26 -7.15 9.49 -15.06 -0.14 -7.29 16 8 H 0.06 1.62 7.88 -52.49 -0.41 1.20 16 9 N -0.59 -14.65 2.95 -172.58 -0.51 -15.16 16 10 C 0.17 4.11 5.25 -3.93 -0.02 4.09 16 11 C -0.14 -2.63 6.06 -26.83 -0.16 -2.79 16 12 C -0.10 -1.59 4.86 -26.69 -0.13 -1.72 16 13 C -0.10 -1.51 1.92 -90.50 -0.17 -1.69 16 14 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.09 -1.14 1.92 -90.50 -0.17 -1.32 16 16 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 17 C -0.12 -1.12 4.86 -26.69 -0.13 -1.25 16 18 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 19 C 0.07 0.53 4.96 -3.71 -0.02 0.51 16 20 N -0.60 -6.34 2.97 -173.77 -0.52 -6.86 16 21 C 0.56 6.75 7.51 -12.20 -0.09 6.66 16 22 O -0.52 -8.29 16.28 5.35 0.09 -8.20 16 23 C -0.12 -1.19 5.57 -104.57 -0.58 -1.77 16 24 C -0.06 -0.51 9.82 -38.78 -0.38 -0.89 16 25 C 0.04 0.30 11.30 -17.42 -0.20 0.10 16 26 N -0.23 -2.34 11.48 30.53 0.35 -1.99 16 27 N -0.24 -2.49 11.49 30.55 0.35 -2.14 16 28 C 0.05 0.43 8.81 -16.96 -0.15 0.28 16 29 C 0.11 1.44 5.20 -3.70 -0.02 1.42 16 30 C 0.15 3.12 5.28 -3.71 -0.02 3.10 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.07 1.86 6.63 -51.93 -0.34 1.52 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.05 0.62 6.34 -51.93 -0.33 0.29 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.71 6.34 -51.93 -0.33 0.38 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.62 3.52 -52.57 -0.19 0.43 16 44 H 0.16 1.13 8.05 -52.48 -0.42 0.71 16 45 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.19 1.14 5.33 -52.49 -0.28 0.86 16 47 H 0.10 1.58 5.76 -51.93 -0.30 1.28 16 48 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 1.10 6.68 -51.93 -0.35 0.75 16 LS Contribution 382.21 15.07 5.76 5.76 Total: -1.00 -33.29 382.21 -9.07 -42.37 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.58 Total: -1.38 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.64 Total: -3.48 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.33 Total: -51.78 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.29 -9.07 -42.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053041124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.886 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds