Wall clock time and date at job start Wed Apr 1 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99831 * 2 1 4 4 H 1.48496 * 109.47788 * 240.00137 * 3 2 1 5 5 H 1.48504 * 109.47096 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47015 * 119.99923 * 3 2 1 7 7 C 1.38811 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00170 * 164.16409 * 7 2 1 9 9 N 1.36942 * 119.99895 * 343.89690 * 7 2 1 10 10 C 1.46927 * 120.62732 * 324.26041 * 9 7 2 11 11 C 1.52760 * 109.00423 * 233.58486 * 10 9 7 12 12 C 1.53042 * 109.38644 * 305.58740 * 11 10 9 13 13 C 1.53041 * 109.53417 * 61.24383 * 12 11 10 14 14 H 1.09000 * 109.50033 * 58.58629 * 13 12 11 15 15 C 1.53001 * 109.52255 * 178.66887 * 13 12 11 16 16 H 1.08998 * 109.50089 * 59.85293 * 15 13 12 17 17 C 1.53038 * 109.49636 * 299.78526 * 15 13 12 18 18 C 1.53043 * 109.53527 * 178.68422 * 17 15 13 19 19 C 1.53187 * 109.31250 * 61.36863 * 18 17 15 20 20 N 1.46924 * 108.77630 * 305.35986 * 19 18 17 21 21 C 1.34769 * 120.63204 * 233.61167 * 20 19 18 22 22 O 1.21520 * 120.00247 * 181.24280 * 21 20 19 23 23 C 1.48131 * 120.00226 * 1.23967 * 21 20 19 24 24 C 1.40121 * 121.14700 * 148.23810 * 23 21 20 25 25 C 1.38503 * 117.82144 * 179.74159 * 24 23 21 26 26 N 1.31914 * 119.97129 * 0.54278 * 25 24 23 27 27 N 1.28281 * 122.51359 * 359.71310 * 26 25 24 28 28 C 1.31926 * 122.32843 * 0.02562 * 27 26 25 29 29 C 1.46933 * 118.76204 * 53.59149 * 20 19 18 30 30 C 1.46922 * 120.62977 * 144.54421 * 9 7 2 31 31 H 0.96997 * 120.00186 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58768 * 353.42006 * 10 9 7 33 33 H 1.08995 * 109.58370 * 113.85010 * 10 9 7 34 34 H 1.09002 * 109.56099 * 185.55231 * 11 10 9 35 35 H 1.09001 * 109.38962 * 65.51949 * 11 10 9 36 36 H 1.08994 * 109.46001 * 301.22217 * 12 11 10 37 37 H 1.09001 * 109.46107 * 181.25689 * 12 11 10 38 38 H 1.08998 * 109.45970 * 298.70540 * 17 15 13 39 39 H 1.09000 * 109.45736 * 58.67891 * 17 15 13 40 40 H 1.09006 * 109.49474 * 181.31694 * 18 17 15 41 41 H 1.08997 * 109.49818 * 301.41332 * 18 17 15 42 42 H 1.08997 * 109.58844 * 65.14966 * 19 18 17 43 43 H 1.09005 * 109.58764 * 185.43058 * 19 18 17 44 44 H 1.08004 * 121.08277 * 359.97218 * 24 23 21 45 45 H 1.08001 * 120.01100 * 180.25677 * 25 24 23 46 46 H 1.07999 * 120.17175 * 180.02562 * 28 27 26 47 47 H 1.08997 * 109.61469 * 186.64086 * 29 20 19 48 48 H 1.09002 * 109.56215 * 66.21519 * 29 20 19 49 49 H 1.09005 * 109.58127 * 246.15320 * 30 9 7 50 50 H 1.09004 * 109.59084 * 6.57237 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6966 -1.2124 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2197 -0.2558 9 7 1.3659 -2.3650 0.3279 10 6 0.3198 -2.3754 1.3595 11 6 0.6612 -3.4370 2.4035 12 6 0.8722 -4.7839 1.7081 13 6 2.0415 -4.6755 0.7267 14 1 2.9414 -4.3770 1.2645 15 6 2.2735 -6.0310 0.0561 16 1 1.3732 -6.3302 -0.4807 17 6 2.6044 -7.0782 1.1219 18 6 2.8043 -8.4413 0.4553 19 6 3.9801 -8.3592 -0.5232 20 7 3.7361 -7.2574 -1.4641 21 6 3.7802 -7.4681 -2.7945 22 8 3.5990 -6.5439 -3.5625 23 6 4.0496 -8.8263 -3.3208 24 6 3.4936 -9.2575 -4.5326 25 6 3.7956 -10.5390 -4.9626 26 7 4.5748 -11.3129 -4.2318 27 7 5.0827 -10.9261 -3.1191 28 6 4.8621 -9.7237 -2.6230 29 6 3.4427 -5.9214 -0.9277 30 6 1.7119 -3.6269 -0.3403 31 1 -0.4850 0.8400 0.0004 32 1 0.2687 -1.3974 1.8380 33 1 -0.6412 -2.6117 0.9029 34 1 -0.1565 -3.5213 3.1193 35 1 1.5739 -3.1504 2.9260 36 1 -0.0327 -5.0584 1.1660 37 1 1.0940 -5.5470 2.4542 38 1 3.5181 -6.7908 1.6420 39 1 1.7839 -7.1406 1.8367 40 1 3.0170 -9.1912 1.2173 41 1 1.8994 -8.7180 -0.0856 42 1 4.9017 -8.1718 0.0278 43 1 4.0661 -9.2978 -1.0707 44 1 2.8536 -8.6104 -5.1140 45 1 3.3895 -10.9061 -5.8936 46 1 5.3079 -9.4342 -1.6829 47 1 3.1723 -5.2508 -1.7433 48 1 4.3207 -5.5350 -0.4101 49 1 0.8666 -3.9673 -0.9383 50 1 2.5790 -3.4744 -0.9830 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053041124.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:57 Heat of formation + Delta-G solvation = 34.599614 kcal Electronic energy + Delta-G solvation = -30786.808140 eV Core-core repulsion = 26814.491853 eV Total energy + Delta-G solvation = -3972.316288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54597 -41.13181 -39.76817 -38.20821 -35.80750 -34.58194 -34.00826 -33.44445 -32.89915 -32.21911 -29.79808 -27.80634 -27.07541 -26.05860 -25.50521 -24.62322 -23.71146 -22.62463 -21.74309 -20.68267 -20.54028 -19.36080 -18.62883 -18.27993 -17.81457 -17.23435 -16.84006 -16.48359 -16.07516 -15.86183 -15.82654 -15.64958 -15.32201 -14.99845 -14.83699 -14.79313 -14.53056 -14.33300 -14.16440 -14.04154 -13.73317 -13.57537 -13.11273 -12.92816 -12.69380 -12.48018 -12.35235 -12.19681 -12.04995 -11.92318 -11.79882 -11.74958 -11.67558 -11.50819 -11.40709 -11.36703 -11.11241 -11.00144 -10.85546 -10.63267 -10.55252 -9.77129 -8.58649 -7.89755 -5.44009 -0.77869 -0.25375 1.43619 1.43847 1.45539 1.52645 1.69670 2.42859 2.48030 2.95140 3.05931 3.23852 3.29578 3.45796 3.58037 3.73612 3.76160 3.82825 3.88014 4.02507 4.15900 4.23240 4.26627 4.32514 4.37672 4.42092 4.52765 4.54102 4.63009 4.68461 4.75463 4.77993 4.80648 4.87260 4.92109 5.01932 5.03743 5.06046 5.09370 5.14476 5.24516 5.35899 5.37686 5.41195 5.42987 5.52385 5.57147 5.64952 5.76004 6.15667 6.40358 6.82794 7.14387 7.49633 7.83425 8.39810 9.14948 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002571 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.954944 B =10888.866707 C =11934.006593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.271 4.271 8 H 0.059 0.941 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.132 4.132 12 C -0.095 4.095 13 C -0.081 4.081 14 H 0.070 0.930 15 C -0.080 4.080 16 H 0.058 0.942 17 C -0.112 4.112 18 C -0.129 4.129 19 C 0.067 3.933 20 N -0.591 5.591 21 C 0.556 3.444 22 O -0.569 6.569 23 C -0.136 4.136 24 C -0.061 4.061 25 C 0.052 3.948 26 N -0.256 5.256 27 N -0.263 5.263 28 C 0.061 3.939 29 C 0.117 3.883 30 C 0.151 3.849 31 H 0.251 0.749 32 H 0.035 0.965 33 H -0.010 1.010 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.170 0.830 45 H 0.217 0.783 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.083 0.917 49 H -0.005 1.005 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.717 -24.611 0.310 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.240 4.240 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.401 4.401 8 H 0.076 0.924 9 N -0.331 5.331 10 C 0.053 3.947 11 C -0.171 4.171 12 C -0.132 4.132 13 C -0.102 4.102 14 H 0.088 0.912 15 C -0.100 4.100 16 H 0.076 0.924 17 C -0.150 4.150 18 C -0.167 4.167 19 C -0.053 4.053 20 N -0.322 5.322 21 C 0.343 3.657 22 O -0.449 6.449 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.112 4.112 26 N -0.097 5.097 27 N -0.103 5.103 28 C -0.103 4.103 29 C -0.005 4.005 30 C 0.026 3.974 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.008 0.992 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.188 0.812 45 H 0.234 0.766 46 H 0.233 0.767 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.013 0.987 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.275 -25.471 0.095 26.782 hybrid contribution -0.924 3.160 -0.636 3.353 sum 7.351 -22.311 -0.541 23.497 Atomic orbital electron populations 1.70184 1.06888 1.26094 1.54530 1.26005 0.95994 1.01842 1.00132 0.85387 0.77710 0.79108 0.78505 1.20143 1.21841 1.19951 1.19355 0.92146 0.85969 1.42669 0.92351 1.44201 1.43618 1.04042 1.41277 1.20425 0.89038 0.96587 0.88603 1.21947 1.01033 0.96234 0.97842 1.21430 0.97241 0.96561 0.97991 1.21451 0.98864 0.93389 0.96452 0.91184 1.21374 0.97058 0.95258 0.96320 0.92377 1.21640 1.03142 0.93288 0.96914 1.21921 0.97784 0.98065 0.98895 1.23019 1.00726 0.89783 0.91787 1.48100 1.67835 1.11519 1.04744 1.18326 0.77148 0.87552 0.82675 1.90835 1.51413 1.44928 1.57715 1.21131 1.01034 0.95063 0.97794 1.22882 0.95764 0.97116 0.93338 1.24899 0.94191 0.90495 1.01636 1.72817 1.05781 1.30640 1.00450 1.73099 1.16411 1.14760 1.06074 1.25419 0.94218 0.90049 1.00626 1.21723 0.98662 0.82813 0.97299 1.21074 0.96297 0.86549 0.93482 0.94038 0.94593 0.99169 0.91247 0.92729 0.93555 0.89317 0.90339 0.90276 0.87411 0.92404 0.87501 0.86890 0.81231 0.76620 0.76665 0.91681 0.89856 0.98670 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 11.74 21.65 0.25 -56.70 16 2 C -0.04 -2.49 4.88 84.86 0.41 -2.08 16 3 Si 0.97 45.80 29.58 68.60 2.03 47.83 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.27 -15.41 9.49 84.03 0.80 -14.61 16 8 H 0.06 3.26 7.88 -2.91 -0.02 3.24 16 9 N -0.61 -31.44 2.95 -699.93 -2.07 -33.51 16 10 C 0.18 8.77 5.25 86.22 0.45 9.22 16 11 C -0.13 -4.72 6.06 30.53 0.19 -4.54 16 12 C -0.09 -2.79 4.86 30.62 0.15 -2.64 16 13 C -0.08 -2.49 1.92 -10.72 -0.02 -2.51 16 14 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.08 -1.89 1.92 -10.72 -0.02 -1.91 16 16 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 17 C -0.11 -1.71 4.86 30.62 0.15 -1.56 16 18 C -0.13 -1.41 6.08 30.67 0.19 -1.22 16 19 C 0.07 0.74 4.96 86.36 0.43 1.17 16 20 N -0.59 -11.82 2.97 -821.99 -2.44 -14.26 16 21 C 0.56 13.36 7.51 86.87 0.65 14.01 16 22 O -0.57 -19.10 16.28 -3.78 -0.06 -19.16 16 23 C -0.14 -2.45 5.57 -19.83 -0.11 -2.56 16 24 C -0.06 -0.92 9.82 22.79 0.22 -0.70 16 25 C 0.05 0.66 11.30 84.74 0.96 1.62 16 26 N -0.26 -4.69 11.48 -57.34 -0.66 -5.35 16 27 N -0.26 -4.90 11.49 -57.26 -0.66 -5.55 16 28 C 0.06 0.90 8.81 85.04 0.75 1.65 16 29 C 0.12 2.91 5.20 86.36 0.45 3.36 16 30 C 0.15 6.49 5.28 86.36 0.46 6.94 16 31 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.04 1.97 6.63 -2.39 -0.02 1.96 16 33 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.96 6.34 -2.39 -0.02 1.94 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.16 6.34 -2.39 -0.02 1.14 16 40 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 1.00 3.52 -2.99 -0.01 0.99 16 44 H 0.17 2.26 8.05 -2.91 -0.02 2.24 16 45 H 0.22 0.97 8.06 -2.91 -0.02 0.95 16 46 H 0.22 1.87 5.33 -2.91 -0.02 1.86 16 47 H 0.06 2.13 5.76 -2.39 -0.01 2.12 16 48 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 50 H 0.04 1.89 6.68 -2.39 -0.02 1.88 16 Total: -1.00 -77.66 382.21 3.44 -74.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.95 Total: 8.84 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 6.10 Total: 3.65 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -5.57 Total: -115.38 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.06 Total: -19.16 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -77.66 3.44 -74.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053041124.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.818 kcal (2) G-P(sol) polarization free energy of solvation -77.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds