Wall clock time and date at job start Wed Apr 1 2020 03:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38550 * 120.01975 * 2 1 4 4 C 1.40067 * 117.81887 * 179.97438 * 3 2 1 5 5 C 1.48134 * 121.14604 * 179.97438 * 4 3 2 6 6 O 1.21515 * 120.00154 * 126.19383 * 5 4 3 7 7 N 1.34779 * 120.00021 * 306.19458 * 5 4 3 8 8 C 1.46944 * 120.71766 * 354.21043 * 7 5 4 9 9 C 1.53194 * 108.90132 * 234.30342 * 8 7 5 10 10 C 1.53174 * 109.28025 * 304.61989 * 9 8 7 11 11 C 1.52068 * 109.73649 * 59.92095 * 10 9 8 12 12 C 1.54581 * 110.67360 * 64.31823 * 11 10 9 13 13 C 1.54468 * 102.76120 * 152.61606 * 12 11 10 14 14 N 1.47084 * 107.42285 * 338.69288 * 13 12 11 15 15 C 1.36940 * 125.62520 * 178.94784 * 14 13 12 16 16 H 1.08002 * 119.99719 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00048 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99887 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46728 * 59.99493 * 19 17 15 21 21 H 1.48492 * 109.46869 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47009 * 299.99988 * 19 17 15 23 23 C 1.47573 * 108.74568 * 358.92650 * 14 13 12 24 24 C 1.47105 * 120.71954 * 174.18896 * 7 5 4 25 25 C 1.39769 * 117.71113 * 0.25151 * 4 3 2 26 26 C 1.50692 * 120.17558 * 179.72485 * 25 4 3 27 27 N 1.31895 * 119.65038 * 359.48310 * 25 4 3 28 28 N 1.28279 * 122.33075 * 0.54616 * 27 25 4 29 29 H 1.09001 * 109.47454 * 89.99461 * 1 2 3 30 30 H 1.08999 * 109.47574 * 210.00138 * 1 2 3 31 31 H 1.09008 * 109.47103 * 329.99988 * 1 2 3 32 32 H 1.07998 * 121.08957 * 359.95338 * 3 2 1 33 33 H 1.08996 * 109.56952 * 114.48416 * 8 7 5 34 34 H 1.08996 * 109.56872 * 354.13019 * 8 7 5 35 35 H 1.08995 * 109.50438 * 184.67199 * 9 8 7 36 36 H 1.09009 * 109.53249 * 64.57501 * 9 8 7 37 37 H 1.09007 * 109.42259 * 299.84902 * 10 9 8 38 38 H 1.08991 * 109.38859 * 179.97438 * 10 9 8 39 39 H 1.09002 * 110.71262 * 34.34061 * 12 11 10 40 40 H 1.09009 * 110.85804 * 270.95666 * 12 11 10 41 41 H 1.08994 * 109.87606 * 219.19253 * 13 12 11 42 42 H 1.09000 * 109.87727 * 98.19020 * 13 12 11 43 43 H 0.96996 * 120.00092 * 179.97438 * 18 17 15 44 44 H 1.09004 * 110.37670 * 142.11817 * 23 14 13 45 45 H 1.08998 * 110.37568 * 264.47068 * 23 14 13 46 46 H 1.09002 * 109.56616 * 7.97145 * 24 7 5 47 47 H 1.08999 * 109.56754 * 247.61896 * 24 7 5 48 48 H 1.09008 * 109.47231 * 94.87349 * 26 25 4 49 49 H 1.08997 * 109.47608 * 214.87578 * 26 25 4 50 50 H 1.09004 * 109.47470 * 334.87616 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5997 1.1459 0.0006 5 6 4.4140 2.3833 0.0000 6 8 5.2668 2.5498 0.8495 7 7 4.2090 3.3245 -0.9426 8 6 3.2727 3.0865 -2.0498 9 6 4.0025 3.3212 -3.3761 10 6 4.6092 4.7276 -3.3776 11 6 5.5929 4.8638 -2.2259 12 6 6.7907 3.9051 -2.4151 13 6 7.9285 4.6278 -1.6607 14 7 7.5608 6.0487 -1.5655 15 6 8.2985 7.0240 -0.9490 16 1 7.9407 8.0429 -0.9335 17 6 9.5059 6.7029 -0.3442 18 7 9.9416 5.4611 -0.3627 19 14 10.5125 8.0335 0.4961 20 1 9.7136 8.6418 1.5901 21 1 11.7496 7.4363 1.0601 22 1 10.8741 9.0799 -0.4936 23 6 6.2660 6.2500 -2.2442 24 6 4.9175 4.6125 -0.8852 25 6 4.2017 -0.1156 -0.0044 26 6 5.7036 -0.2381 -0.0103 27 7 3.4482 -1.1981 0.0011 28 7 2.1667 -1.1420 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6783 2.1452 -0.0008 33 1 2.4307 3.7741 -1.9700 34 1 2.9121 2.0588 -2.0085 35 1 3.2965 3.2285 -4.2013 36 1 4.7959 2.5825 -3.4912 37 1 3.8146 5.4653 -3.2647 38 1 5.1294 4.8963 -4.3204 39 1 7.0355 3.7978 -3.4718 40 1 6.5853 2.9338 -1.9649 41 1 8.8633 4.5230 -2.2115 42 1 8.0377 4.2054 -0.6618 43 1 10.7855 5.2369 0.0597 44 1 5.6599 6.9734 -1.6987 45 1 6.4230 6.5822 -3.2704 46 1 5.6703 4.5802 -0.0975 47 1 4.2056 5.4118 -0.6795 48 1 6.0625 -0.3568 1.0121 49 1 5.9950 -1.1067 -0.6008 50 1 6.1398 0.6606 -0.4464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054138777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:39 Heat of formation + Delta-G solvation = 47.910645 kcal Electronic energy + Delta-G solvation = -31739.865286 eV Core-core repulsion = 27768.126208 eV Total energy + Delta-G solvation = -3971.739078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67182 -40.26111 -38.39506 -36.03925 -34.76693 -33.95284 -32.98073 -32.00038 -30.34601 -29.78572 -28.68464 -27.10628 -26.39644 -25.70779 -24.40287 -23.77726 -22.88469 -21.98683 -20.30114 -19.78033 -18.34198 -17.96477 -17.36487 -16.76506 -16.24337 -15.96010 -15.54676 -15.21441 -14.87209 -14.57365 -14.47737 -14.04043 -13.87509 -13.71021 -13.57185 -13.50722 -13.23729 -13.07750 -12.81936 -12.62947 -12.53459 -12.41275 -12.25262 -11.98579 -11.70188 -11.33351 -11.21960 -11.09127 -10.89778 -10.81708 -10.64472 -10.55171 -10.29353 -10.15543 -10.03863 -9.95985 -9.72731 -9.69166 -9.64584 -9.53376 -8.63467 -8.55138 -6.79360 -5.66462 -3.00505 0.21718 0.55913 2.45034 2.78141 3.21204 3.42968 3.47062 3.48795 3.64414 3.97412 4.09108 4.18871 4.46286 4.52057 4.62167 4.75228 4.82043 4.92660 4.96936 5.08324 5.12859 5.21457 5.22771 5.27606 5.38967 5.45270 5.47542 5.52498 5.55082 5.62687 5.73416 5.75812 5.83938 5.85778 5.92446 5.96461 6.05678 6.08057 6.19525 6.25260 6.37742 6.42013 6.55430 6.62855 6.72827 6.84905 7.28459 7.59771 7.68635 7.88816 8.00280 8.30262 8.42487 9.25817 9.86351 10.52177 11.44676 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003147 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.777524 B = 8894.492989 C = 9682.762589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.057 3.943 3 C -0.087 4.087 4 C -0.112 4.112 5 C 0.559 3.441 6 O -0.504 6.504 7 N -0.597 5.597 8 C 0.104 3.896 9 C -0.133 4.133 10 C -0.102 4.102 11 C -0.087 4.087 12 C -0.128 4.128 13 C 0.179 3.821 14 N -0.604 5.604 15 C -0.231 4.231 16 H 0.076 0.924 17 C -0.006 4.006 18 N -0.918 5.918 19 Si 0.910 3.090 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.149 3.851 24 C 0.134 3.866 25 C 0.109 3.891 26 C -0.104 4.104 27 N -0.238 5.238 28 N -0.231 5.231 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.154 0.846 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.048 0.952 43 H 0.252 0.748 44 H 0.038 0.962 45 H 0.022 0.978 46 H 0.108 0.892 47 H 0.065 0.935 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.131 -8.911 -4.843 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.087 4.087 3 C -0.116 4.116 4 C -0.127 4.127 5 C 0.344 3.656 6 O -0.379 6.379 7 N -0.330 5.330 8 C -0.019 4.019 9 C -0.171 4.171 10 C -0.140 4.140 11 C -0.089 4.089 12 C -0.166 4.166 13 C 0.054 3.946 14 N -0.330 5.330 15 C -0.359 4.359 16 H 0.094 0.906 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.741 3.259 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.022 3.978 24 C 0.013 3.987 25 C -0.035 4.035 26 C -0.162 4.162 27 N -0.080 5.080 28 N -0.074 5.074 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.172 0.828 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.040 0.960 46 H 0.126 0.874 47 H 0.084 0.916 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.496 -10.457 -4.238 22.526 hybrid contribution 0.582 2.283 0.378 2.386 sum -18.914 -8.175 -3.860 20.963 Atomic orbital electron populations 1.20677 0.87019 1.04235 1.03765 1.22830 0.99213 0.89934 0.96735 1.22471 0.92944 1.00490 0.95703 1.21197 0.94717 0.95791 1.00966 1.17932 0.83039 0.82167 0.82445 1.90907 1.31889 1.77638 1.37438 1.48110 1.43489 1.16606 1.24806 1.21843 0.91974 1.01416 0.86689 1.21924 1.00326 0.98842 0.96027 1.21327 0.98310 0.95673 0.98644 1.21456 0.95035 0.98714 0.93645 1.22831 0.96176 0.97592 1.00039 1.21161 0.92528 0.82884 0.98034 1.44498 1.19185 1.05125 1.64226 1.18967 1.00183 0.88811 1.27961 0.90598 1.24791 0.97970 0.96509 1.00980 1.69956 1.21767 1.16195 1.48641 0.86231 0.79646 0.80699 0.79347 1.21196 1.21637 1.21266 1.21410 0.88024 0.92520 0.95828 1.21544 0.96158 0.81727 0.99273 1.23050 0.99535 0.88501 0.92425 1.20785 0.86430 1.04358 1.04660 1.73023 0.98919 1.26188 1.09840 1.72809 1.01778 1.24866 1.07907 0.89693 0.89758 0.90163 0.82801 0.90983 0.90671 0.90894 0.91183 0.91998 0.91330 0.92665 0.92666 0.94273 0.93385 0.93731 0.94373 0.96030 0.87363 0.91636 0.88835 0.89660 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.19 36.00 0.37 -0.19 16 2 C 0.06 0.55 6.86 -82.46 -0.57 -0.01 16 3 C -0.09 -0.83 7.67 -38.78 -0.30 -1.13 16 4 C -0.11 -1.41 4.64 -104.58 -0.49 -1.90 16 5 C 0.56 8.34 6.20 -12.20 -0.08 8.27 16 6 O -0.50 -9.71 15.52 5.35 0.08 -9.63 16 7 N -0.60 -7.89 2.60 -174.20 -0.45 -8.35 16 8 C 0.10 0.98 5.66 -3.70 -0.02 0.96 16 9 C -0.13 -1.30 5.92 -26.54 -0.16 -1.46 16 10 C -0.10 -1.20 4.64 -27.12 -0.13 -1.32 16 11 C -0.09 -1.38 0.56 -153.97 -0.09 -1.46 16 12 C -0.13 -2.35 4.92 -25.13 -0.12 -2.47 16 13 C 0.18 4.34 4.95 -2.95 -0.01 4.33 16 14 N -0.60 -15.11 3.39 -170.31 -0.58 -15.69 16 15 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 16 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 17 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 18 N -0.92 -27.35 10.31 55.49 0.57 -26.78 16 19 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.15 2.90 6.15 -2.88 -0.02 2.89 16 24 C 0.13 2.13 5.08 -4.11 -0.02 2.11 16 25 C 0.11 1.46 6.91 -82.00 -0.57 0.89 16 26 C -0.10 -1.31 9.54 36.00 0.34 -0.97 16 27 N -0.24 -3.30 11.42 33.81 0.39 -2.91 16 28 N -0.23 -2.92 11.40 33.58 0.38 -2.54 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.30 8.09 -51.92 -0.42 -0.12 16 32 H 0.15 1.05 7.84 -52.49 -0.41 0.64 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.65 5.36 -51.93 -0.28 0.37 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.78 7.42 -51.92 -0.39 0.40 16 37 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 40 H 0.05 1.00 7.70 -51.92 -0.40 0.60 16 41 H 0.04 1.07 7.50 -51.93 -0.39 0.68 16 42 H 0.05 1.34 7.37 -51.93 -0.38 0.95 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.04 0.72 8.01 -51.93 -0.42 0.30 16 45 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 46 H 0.11 2.23 6.61 -51.93 -0.34 1.88 16 47 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 48 H 0.09 1.17 8.14 -51.92 -0.42 0.74 16 49 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.18 6.68 -51.93 -0.35 0.83 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -33.67 389.09 -8.81 -42.48 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.95 Total: -1.48 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -2.10 Total: 1.71 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.31 Total: -56.27 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.67 -8.81 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054138777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.393 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds