Wall clock time and date at job start Wed Apr 1 2020 03:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38550 * 120.01975 * 2 1 4 4 C 1.40067 * 117.81887 * 179.97438 * 3 2 1 5 5 C 1.48134 * 121.14604 * 179.97438 * 4 3 2 6 6 O 1.21515 * 120.00154 * 126.19383 * 5 4 3 7 7 N 1.34779 * 120.00021 * 306.19458 * 5 4 3 8 8 C 1.46944 * 120.71766 * 354.21043 * 7 5 4 9 9 C 1.53194 * 108.90132 * 234.30342 * 8 7 5 10 10 C 1.53174 * 109.28025 * 304.61989 * 9 8 7 11 11 C 1.52068 * 109.73649 * 59.92095 * 10 9 8 12 12 C 1.54581 * 110.67360 * 64.31823 * 11 10 9 13 13 C 1.54468 * 102.76120 * 152.61606 * 12 11 10 14 14 N 1.47084 * 107.42285 * 338.69288 * 13 12 11 15 15 C 1.36940 * 125.62520 * 178.94784 * 14 13 12 16 16 H 1.08002 * 119.99719 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00048 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00177 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99887 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46728 * 59.99493 * 19 17 15 21 21 H 1.48492 * 109.46869 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47009 * 299.99988 * 19 17 15 23 23 C 1.47573 * 108.74568 * 358.92650 * 14 13 12 24 24 C 1.47105 * 120.71954 * 174.18896 * 7 5 4 25 25 C 1.39769 * 117.71113 * 0.25151 * 4 3 2 26 26 C 1.50692 * 120.17558 * 179.72485 * 25 4 3 27 27 N 1.31895 * 119.65038 * 359.48310 * 25 4 3 28 28 N 1.28279 * 122.33075 * 0.54616 * 27 25 4 29 29 H 1.09001 * 109.47454 * 89.99461 * 1 2 3 30 30 H 1.08999 * 109.47574 * 210.00138 * 1 2 3 31 31 H 1.09008 * 109.47103 * 329.99988 * 1 2 3 32 32 H 1.07998 * 121.08957 * 359.95338 * 3 2 1 33 33 H 1.08996 * 109.56952 * 114.48416 * 8 7 5 34 34 H 1.08996 * 109.56872 * 354.13019 * 8 7 5 35 35 H 1.08995 * 109.50438 * 184.67199 * 9 8 7 36 36 H 1.09009 * 109.53249 * 64.57501 * 9 8 7 37 37 H 1.09007 * 109.42259 * 299.84902 * 10 9 8 38 38 H 1.08991 * 109.38859 * 179.97438 * 10 9 8 39 39 H 1.09002 * 110.71262 * 34.34061 * 12 11 10 40 40 H 1.09009 * 110.85804 * 270.95666 * 12 11 10 41 41 H 1.08994 * 109.87606 * 219.19253 * 13 12 11 42 42 H 1.09000 * 109.87727 * 98.19020 * 13 12 11 43 43 H 0.96996 * 120.00092 * 179.97438 * 18 17 15 44 44 H 1.09004 * 110.37670 * 142.11817 * 23 14 13 45 45 H 1.08998 * 110.37568 * 264.47068 * 23 14 13 46 46 H 1.09002 * 109.56616 * 7.97145 * 24 7 5 47 47 H 1.08999 * 109.56754 * 247.61896 * 24 7 5 48 48 H 1.09008 * 109.47231 * 94.87349 * 26 25 4 49 49 H 1.08997 * 109.47608 * 214.87578 * 26 25 4 50 50 H 1.09004 * 109.47470 * 334.87616 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2001 1.1996 0.0000 4 6 3.5997 1.1459 0.0006 5 6 4.4140 2.3833 0.0000 6 8 5.2668 2.5498 0.8495 7 7 4.2090 3.3245 -0.9426 8 6 3.2727 3.0865 -2.0498 9 6 4.0025 3.3212 -3.3761 10 6 4.6092 4.7276 -3.3776 11 6 5.5929 4.8638 -2.2259 12 6 6.7907 3.9051 -2.4151 13 6 7.9285 4.6278 -1.6607 14 7 7.5608 6.0487 -1.5655 15 6 8.2985 7.0240 -0.9490 16 1 7.9407 8.0429 -0.9335 17 6 9.5059 6.7029 -0.3442 18 7 9.9416 5.4611 -0.3627 19 14 10.5125 8.0335 0.4961 20 1 9.7136 8.6418 1.5901 21 1 11.7496 7.4363 1.0601 22 1 10.8741 9.0799 -0.4936 23 6 6.2660 6.2500 -2.2442 24 6 4.9175 4.6125 -0.8852 25 6 4.2017 -0.1156 -0.0044 26 6 5.7036 -0.2381 -0.0103 27 7 3.4482 -1.1981 0.0011 28 7 2.1667 -1.1420 0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6783 2.1452 -0.0008 33 1 2.4307 3.7741 -1.9700 34 1 2.9121 2.0588 -2.0085 35 1 3.2965 3.2285 -4.2013 36 1 4.7959 2.5825 -3.4912 37 1 3.8146 5.4653 -3.2647 38 1 5.1294 4.8963 -4.3204 39 1 7.0355 3.7978 -3.4718 40 1 6.5853 2.9338 -1.9649 41 1 8.8633 4.5230 -2.2115 42 1 8.0377 4.2054 -0.6618 43 1 10.7855 5.2369 0.0597 44 1 5.6599 6.9734 -1.6987 45 1 6.4230 6.5822 -3.2704 46 1 5.6703 4.5802 -0.0975 47 1 4.2056 5.4118 -0.6795 48 1 6.0625 -0.3568 1.0121 49 1 5.9950 -1.1067 -0.6008 50 1 6.1398 0.6606 -0.4464 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054138777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:38 Heat of formation + Delta-G solvation = 25.862563 kcal Electronic energy + Delta-G solvation = -31740.821362 eV Core-core repulsion = 27768.126208 eV Total energy + Delta-G solvation = -3972.695155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.62126 -41.41172 -39.74625 -37.43545 -35.60119 -35.16891 -34.38153 -33.29636 -31.68190 -30.91090 -30.37272 -28.00697 -27.57645 -27.12283 -25.45600 -25.33405 -23.81005 -23.07132 -22.07471 -20.98795 -19.65671 -18.91223 -18.60875 -18.38652 -17.34146 -16.88351 -16.80360 -16.53151 -16.38823 -15.85753 -15.64645 -15.41126 -15.12046 -14.74241 -14.57161 -14.44342 -14.32185 -14.05354 -13.99222 -13.86516 -13.55395 -13.49240 -13.35324 -13.32419 -13.11401 -12.98304 -12.73085 -12.42721 -12.18712 -12.11537 -12.05051 -11.93083 -11.80881 -11.69621 -11.51465 -11.35859 -11.14479 -11.05651 -10.70162 -10.63661 -10.56890 -9.73762 -8.88219 -7.83660 -5.19227 -0.68565 -0.28541 1.34053 1.42761 1.46878 1.52914 1.72305 2.30931 2.49236 2.80544 3.05913 3.21477 3.34473 3.39109 3.57852 3.67391 3.73832 3.82358 3.88653 4.00622 4.07630 4.17708 4.21536 4.30170 4.34555 4.48998 4.49459 4.53488 4.61715 4.70854 4.72560 4.77564 4.81429 4.82186 4.88267 4.89445 4.96459 5.02685 5.05351 5.08561 5.11320 5.20920 5.31909 5.41816 5.43291 5.46120 5.51111 5.65565 5.77663 6.19491 6.21684 6.89556 7.09886 7.53508 7.79422 8.43972 9.26391 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003147 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.777524 B = 8894.492989 C = 9682.762589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.067 3.933 3 C -0.065 4.065 4 C -0.125 4.125 5 C 0.559 3.441 6 O -0.564 6.564 7 N -0.589 5.589 8 C 0.098 3.902 9 C -0.129 4.129 10 C -0.095 4.095 11 C -0.070 4.070 12 C -0.111 4.111 13 C 0.192 3.808 14 N -0.625 5.625 15 C -0.239 4.239 16 H 0.087 0.913 17 C -0.071 4.071 18 N -0.953 5.953 19 Si 0.977 3.023 20 H -0.277 1.277 21 H -0.299 1.299 22 H -0.273 1.273 23 C 0.142 3.858 24 C 0.140 3.860 25 C 0.096 3.904 26 C -0.099 4.099 27 N -0.260 5.260 28 N -0.256 5.256 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.193 0.807 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.052 0.948 41 H -0.003 1.003 42 H -0.004 1.004 43 H 0.243 0.757 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.051 0.949 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.956 -7.786 -6.760 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.079 4.079 3 C -0.095 4.095 4 C -0.139 4.139 5 C 0.346 3.654 6 O -0.442 6.442 7 N -0.321 5.321 8 C -0.023 4.023 9 C -0.167 4.167 10 C -0.133 4.133 11 C -0.072 4.072 12 C -0.149 4.149 13 C 0.067 3.933 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.105 0.895 17 C -0.264 4.264 18 N -0.602 5.602 19 Si 0.805 3.195 20 H -0.203 1.203 21 H -0.225 1.225 22 H -0.199 1.199 23 C 0.017 3.983 24 C 0.018 3.982 25 C -0.050 4.050 26 C -0.158 4.158 27 N -0.101 5.101 28 N -0.098 5.098 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.210 0.790 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.130 0.870 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.069 0.931 47 H 0.108 0.892 48 H 0.103 0.897 49 H 0.117 0.883 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.392 -9.328 -6.214 26.844 hybrid contribution 1.984 1.955 0.958 2.946 sum -22.408 -7.373 -5.256 24.168 Atomic orbital electron populations 1.20882 0.83589 1.05556 1.05518 1.23504 1.01146 0.88858 0.94349 1.22877 0.91327 1.02157 0.93107 1.20995 0.95967 0.94060 1.02895 1.18291 0.82423 0.82832 0.81875 1.90885 1.34526 1.78878 1.39948 1.48146 1.43368 1.15139 1.25419 1.22243 0.91932 1.03372 0.84769 1.21939 1.00632 0.96680 0.97460 1.21319 0.97798 0.98011 0.96168 1.21385 0.94868 0.95114 0.95841 1.22615 0.95276 0.97362 0.99669 1.20782 0.93370 0.83717 0.95432 1.44792 1.21200 1.04728 1.64383 1.19446 1.00328 0.89877 1.27129 0.89546 1.25691 0.99597 0.98596 1.02509 1.70228 1.21717 1.18311 1.49989 0.85171 0.77606 0.78191 0.78508 1.20295 1.22542 1.19883 1.21690 0.85866 0.95076 0.95657 1.21264 0.95718 0.83864 0.97393 1.23008 0.99389 0.89098 0.93478 1.20678 0.86999 1.03841 1.04254 1.72983 0.99797 1.26472 1.10897 1.72744 1.01306 1.26740 1.08992 0.87473 0.89849 0.87470 0.79031 0.87115 0.89363 0.86974 0.93057 0.89091 0.90917 0.91116 0.92894 0.98498 0.98544 0.94786 0.93263 0.94807 0.93070 0.89192 0.89650 0.88272 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.19 71.23 0.73 0.10 16 2 C 0.07 1.06 6.86 42.62 0.29 1.35 16 3 C -0.07 -1.03 7.67 22.79 0.17 -0.85 16 4 C -0.12 -3.03 4.64 -19.83 -0.09 -3.12 16 5 C 0.56 16.85 6.20 86.87 0.54 17.39 16 6 O -0.56 -23.41 15.52 -3.76 -0.06 -23.46 16 7 N -0.59 -14.61 2.60 -823.35 -2.14 -16.75 16 8 C 0.10 1.38 5.66 86.36 0.49 1.87 16 9 C -0.13 -1.91 5.92 30.72 0.18 -1.72 16 10 C -0.10 -1.82 4.64 30.35 0.14 -1.68 16 11 C -0.07 -2.14 0.56 -51.83 -0.03 -2.17 16 12 C -0.11 -4.19 4.92 31.63 0.16 -4.03 16 13 C 0.19 10.08 4.95 86.77 0.43 10.50 16 14 N -0.62 -32.42 3.39 -692.75 -2.35 -34.76 16 15 C -0.24 -13.63 10.28 84.03 0.86 -12.76 16 16 H 0.09 4.62 7.83 -2.91 -0.02 4.60 16 17 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 18 N -0.95 -60.72 10.31 21.65 0.22 -60.50 16 19 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 22 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.14 5.41 6.15 86.55 0.53 5.94 16 24 C 0.14 4.36 5.08 86.01 0.44 4.79 16 25 C 0.10 2.59 6.91 42.92 0.30 2.89 16 26 C -0.10 -2.73 9.54 71.23 0.68 -2.05 16 27 N -0.26 -7.19 11.42 -46.94 -0.54 -7.73 16 28 N -0.26 -6.09 11.40 -47.69 -0.54 -6.63 16 29 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 0.18 8.09 -2.38 -0.02 0.16 16 32 H 0.19 1.50 7.84 -2.91 -0.02 1.48 16 33 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.09 5.36 -2.39 -0.01 1.08 16 35 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.98 7.42 -2.38 -0.02 0.96 16 37 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 39 H 0.07 2.44 7.99 -2.39 -0.02 2.42 16 40 H 0.05 2.02 7.70 -2.38 -0.02 2.00 16 41 H 0.00 -0.19 7.50 -2.39 -0.02 -0.21 16 42 H 0.00 -0.23 7.37 -2.39 -0.02 -0.25 16 43 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.05 1.77 8.01 -2.38 -0.02 1.75 16 45 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 46 H 0.05 2.23 6.61 -2.39 -0.02 2.21 16 47 H 0.09 2.36 8.12 -2.39 -0.02 2.34 16 48 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 49 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.06 1.98 6.68 -2.38 -0.02 1.97 16 Total: -1.00 -83.55 389.09 3.85 -79.70 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 0.94 Total: 7.93 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.28 Total: 12.69 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -5.34 Total: -126.37 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.46 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -83.55 3.85 -79.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054138777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.561 kcal (2) G-P(sol) polarization free energy of solvation -83.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds