Wall clock time and date at job start Wed Apr 1 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86801 * 120.00018 * 2 1 4 4 H 1.48505 * 109.46973 * 240.00264 * 3 2 1 5 5 H 1.48503 * 109.47074 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46928 * 120.00350 * 3 2 1 7 7 C 1.38809 * 119.99607 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99621 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00346 * 359.97438 * 7 2 1 10 10 C 1.47088 * 125.63055 * 0.03195 * 9 7 2 11 11 C 1.54458 * 107.30222 * 180.71797 * 10 9 7 12 12 C 1.54361 * 102.86926 * 21.47200 * 11 10 9 13 13 C 1.47589 * 125.62814 * 179.71731 * 9 7 2 14 14 C 1.52061 * 110.59114 * 207.24478 * 12 11 10 15 15 C 1.53180 * 109.73877 * 177.70504 * 14 12 11 16 16 C 1.53191 * 109.27568 * 59.92606 * 15 14 12 17 17 N 1.46935 * 108.89602 * 304.60687 * 16 15 14 18 18 C 1.34781 * 120.71975 * 234.31254 * 17 16 15 19 19 O 1.21570 * 119.99818 * 355.84096 * 18 17 16 20 20 C 1.47712 * 119.99856 * 175.83623 * 18 17 16 21 21 C 1.41506 * 126.51093 * 186.51144 * 20 18 17 22 22 C 1.35375 * 105.49618 * 179.90406 * 21 20 18 23 23 C 1.50697 * 126.38206 * 180.08834 * 22 21 20 24 24 C 1.53002 * 117.50140 * 213.91790 * 23 22 21 25 25 C 1.53002 * 60.00009 * 252.51342 * 24 23 22 26 26 N 1.35034 * 107.22884 * 0.35947 * 22 21 20 27 27 H 0.97001 * 124.88433 * 179.76213 * 26 22 21 28 28 N 1.28469 * 110.23316 * 359.76185 * 26 22 21 29 29 C 1.47104 * 118.56562 * 54.33945 * 17 16 15 30 30 H 0.97003 * 119.99591 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.87302 * 300.14575 * 10 9 7 32 32 H 1.08998 * 109.87952 * 61.13732 * 10 9 7 33 33 H 1.09002 * 110.73525 * 139.81987 * 11 10 9 34 34 H 1.09000 * 110.73302 * 263.12935 * 11 10 9 35 35 H 1.08996 * 110.37582 * 275.80541 * 13 9 7 36 36 H 1.09002 * 110.37275 * 38.16030 * 13 9 7 37 37 H 1.09005 * 109.42570 * 297.78853 * 14 12 11 38 38 H 1.09004 * 109.42744 * 57.67253 * 14 12 11 39 39 H 1.09009 * 109.49840 * 179.86392 * 15 14 12 40 40 H 1.08995 * 109.50240 * 299.98334 * 15 14 12 41 41 H 1.09002 * 109.56466 * 64.43560 * 16 15 14 42 42 H 1.09003 * 109.56037 * 184.66479 * 16 15 14 43 43 H 1.07995 * 127.25423 * 0.02562 * 21 20 18 44 44 H 1.09002 * 115.55043 * 359.62942 * 23 22 21 45 45 H 1.09003 * 117.49071 * 0.02562 * 24 23 22 46 46 H 1.08996 * 117.50363 * 145.01559 * 24 23 22 47 47 H 1.09000 * 117.49169 * 252.50591 * 25 24 23 48 48 H 1.08996 * 117.50270 * 107.48932 * 25 24 23 49 49 H 1.08996 * 109.56977 * 187.94905 * 29 17 16 50 50 H 1.09000 * 109.56007 * 67.59682 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1382 -2.5323 -0.0007 11 6 -0.4507 -4.0448 0.0179 12 6 0.8505 -4.6579 0.5782 13 6 1.9346 -3.7324 -0.0070 14 6 1.0293 -6.0825 0.0774 15 6 2.3527 -6.6516 0.5981 16 6 2.3378 -6.6461 2.1299 17 7 2.0595 -5.2815 2.5982 18 6 2.8886 -4.6691 3.4667 19 8 3.8373 -5.2722 3.9295 20 6 2.6445 -3.2653 3.8561 21 6 3.4892 -2.4523 4.6485 22 6 2.8614 -1.2562 4.7363 23 6 3.3553 -0.0396 5.4760 24 6 2.3075 0.8628 6.1307 25 6 3.0408 1.3304 4.8719 26 7 1.7074 -1.3582 4.0426 27 1 1.0563 -0.6464 3.9411 28 7 1.5958 -2.5337 3.5363 29 6 0.8561 -4.5983 2.0992 30 1 -0.4850 0.8401 0.0004 31 1 -0.5575 -2.0563 0.8857 32 1 -0.5555 -2.0763 -0.8984 33 1 -1.2924 -4.2570 0.6772 34 1 -0.6468 -4.4107 -0.9900 35 1 2.1806 -4.0327 -1.0255 36 1 2.8260 -3.7482 0.6202 37 1 0.2041 -6.6987 0.4348 38 1 1.0381 -6.0853 -1.0126 39 1 2.4758 -7.6734 0.2389 40 1 3.1789 -6.0373 0.2400 41 1 1.5612 -7.3211 2.4897 42 1 3.3077 -6.9723 2.5055 43 1 4.4361 -2.7275 5.0888 44 1 4.3102 -0.1565 5.9884 45 1 1.2610 0.5763 6.0267 46 1 2.5728 1.3397 7.0742 47 1 3.7885 2.1151 4.9873 48 1 2.4767 1.3519 3.9395 49 1 0.8661 -3.5578 2.4237 50 1 -0.0330 -5.0951 2.4874 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054203368.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:39 Heat of formation + Delta-G solvation = 87.389407 kcal Electronic energy + Delta-G solvation = -32744.212039 eV Core-core repulsion = 28774.184888 eV Total energy + Delta-G solvation = -3970.027150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.71341 -41.38089 -39.64094 -38.09308 -37.09645 -34.66548 -33.80565 -32.58662 -31.81563 -31.30465 -29.91318 -27.43074 -26.99402 -25.54968 -24.71234 -24.14491 -23.32789 -22.59906 -21.99305 -21.65483 -20.41244 -19.25088 -18.90223 -18.72160 -17.63211 -16.99448 -16.83637 -16.73187 -16.40058 -16.12980 -15.82012 -15.52137 -15.23485 -15.19823 -14.76140 -14.38330 -14.30352 -13.98265 -13.87432 -13.69702 -13.49817 -13.20770 -13.13503 -12.95338 -12.76966 -12.58666 -12.50275 -12.15523 -12.08397 -12.03938 -11.98564 -11.76466 -11.61918 -11.43351 -11.37354 -11.25133 -11.09394 -10.66322 -10.56112 -10.36698 -9.69330 -9.55772 -8.77832 -7.77847 -5.09586 0.59556 1.06314 1.38566 1.42336 1.47785 1.79290 2.14542 2.40354 2.48927 2.97408 3.29467 3.37768 3.48765 3.64145 3.76761 3.83888 3.91144 3.99365 4.03620 4.09768 4.13872 4.17883 4.28045 4.41257 4.53153 4.60898 4.69666 4.70267 4.75107 4.79106 4.86595 4.89835 4.93824 4.94268 4.98390 5.09935 5.13650 5.13938 5.15055 5.18220 5.25757 5.38010 5.44055 5.46365 5.53525 5.74576 5.78696 5.87578 6.16881 6.26221 6.33778 6.91533 7.18383 7.18810 7.85179 8.51748 9.30872 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.006229 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.301396 B = 4494.221913 C = 6877.643393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.048 4.048 3 Si 0.950 3.050 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.220 4.220 8 H 0.055 0.945 9 N -0.608 5.608 10 C 0.192 3.808 11 C -0.121 4.121 12 C -0.072 4.072 13 C 0.156 3.844 14 C -0.098 4.098 15 C -0.127 4.127 16 C 0.108 3.892 17 N -0.590 5.590 18 C 0.600 3.400 19 O -0.574 6.574 20 C -0.039 4.039 21 C -0.194 4.194 22 C 0.057 3.943 23 C -0.095 4.095 24 C -0.152 4.152 25 C -0.184 4.184 26 N -0.369 5.369 27 H 0.445 0.555 28 N -0.236 5.236 29 C 0.088 3.912 30 H 0.244 0.756 31 H 0.017 0.983 32 H 0.001 0.999 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.010 0.990 36 H 0.013 0.987 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.168 0.832 44 H 0.153 0.847 45 H 0.091 0.909 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.070 0.930 49 H 0.136 0.864 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 -6.634 9.899 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.242 4.242 3 Si 0.780 3.220 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.349 4.349 8 H 0.073 0.927 9 N -0.333 5.333 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.074 4.074 13 C 0.031 3.969 14 C -0.135 4.135 15 C -0.165 4.165 16 C -0.014 4.014 17 N -0.321 5.321 18 C 0.388 3.612 19 O -0.453 6.453 20 C -0.198 4.198 21 C -0.222 4.222 22 C -0.069 4.069 23 C -0.114 4.114 24 C -0.189 4.189 25 C -0.222 4.222 26 N -0.082 5.082 27 H 0.290 0.710 28 N -0.072 5.072 29 C -0.035 4.035 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.020 0.980 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.031 0.969 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.185 0.815 44 H 0.171 0.829 45 H 0.110 0.890 46 H 0.151 0.849 47 H 0.140 0.860 48 H 0.089 0.911 49 H 0.153 0.847 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.388 -6.841 9.559 11.761 hybrid contribution 0.880 1.750 -0.312 1.983 sum 1.268 -5.092 9.246 10.631 Atomic orbital electron populations 1.70153 1.05416 1.24654 1.58636 1.25214 0.96262 0.99312 1.03375 0.85582 0.77551 0.80786 0.78065 1.21855 1.21653 1.20112 1.19001 0.89693 0.84084 1.42146 0.92684 1.44557 1.02158 1.00190 1.86417 1.20871 0.83392 0.91455 0.97540 1.22716 0.96586 0.95552 1.01061 1.21294 0.95597 0.95715 0.94777 1.21428 0.94543 0.85328 0.95629 1.21357 0.98081 0.93275 1.00821 1.21912 0.97705 1.02704 0.94134 1.21816 1.02919 0.81609 0.95037 1.48032 1.24720 1.16339 1.42965 1.17169 0.81543 0.83793 0.78684 1.90684 1.31610 1.66031 1.57017 1.21941 0.96107 0.96001 1.05747 1.21485 1.02953 0.92225 1.05524 1.20850 0.88908 0.97433 0.99726 1.20690 1.02208 0.85645 1.02896 1.23184 0.96819 1.01041 0.97887 1.23134 1.04634 0.96899 0.97498 1.43476 1.17890 1.10916 1.35959 0.70969 1.73262 1.23950 0.93279 1.16702 1.22601 0.85477 1.02445 0.92945 0.94599 0.96508 0.98035 0.89858 0.90800 0.97234 0.96891 0.89378 0.91144 0.87563 0.93681 0.89010 0.90097 0.81460 0.82940 0.89030 0.84937 0.85986 0.91136 0.84707 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.45 10.31 21.65 0.22 -53.23 16 2 C -0.05 -2.64 5.49 84.86 0.47 -2.18 16 3 Si 0.95 44.73 29.55 68.60 2.03 46.76 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.22 -12.21 10.28 84.03 0.86 -11.35 16 8 H 0.06 3.15 7.83 -2.91 -0.02 3.12 16 9 N -0.61 -30.47 3.33 -692.76 -2.31 -32.78 16 10 C 0.19 9.12 5.11 86.76 0.44 9.56 16 11 C -0.12 -4.19 5.89 31.55 0.19 -4.00 16 12 C -0.07 -2.39 0.55 -51.92 -0.03 -2.42 16 13 C 0.16 6.65 5.20 86.54 0.45 7.10 16 14 C -0.10 -2.41 4.64 30.34 0.14 -2.27 16 15 C -0.13 -2.99 5.93 30.72 0.18 -2.81 16 16 C 0.11 2.82 6.40 86.36 0.55 3.37 16 17 N -0.59 -19.70 2.60 -823.83 -2.15 -21.85 16 18 C 0.60 23.21 7.70 86.75 0.67 23.88 16 19 O -0.57 -23.90 16.37 -3.94 -0.06 -23.96 16 20 C -0.04 -1.49 6.90 42.46 0.29 -1.19 16 21 C -0.19 -6.57 10.74 22.41 0.24 -6.33 16 22 C 0.06 1.72 6.64 41.40 0.28 1.99 16 23 C -0.09 -2.08 6.26 -11.54 -0.07 -2.16 16 24 C -0.15 -2.66 10.22 30.60 0.31 -2.35 16 25 C -0.18 -4.07 10.23 30.60 0.31 -3.76 16 26 N -0.37 -12.52 6.80 -47.93 -0.33 -12.84 16 27 H 0.45 14.10 8.96 -219.99 -1.97 12.13 16 28 N -0.24 -9.07 8.57 -48.17 -0.41 -9.48 16 29 C 0.09 2.98 4.87 86.01 0.42 3.40 16 30 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 31 H 0.02 0.88 7.40 -2.38 -0.02 0.86 16 32 H 0.00 0.08 7.48 -2.39 -0.02 0.06 16 33 H 0.08 2.52 7.99 -2.39 -0.02 2.50 16 34 H 0.07 2.36 8.00 -2.39 -0.02 2.34 16 35 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 36 H 0.01 0.60 7.65 -2.39 -0.02 0.58 16 37 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 39 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.04 1.29 7.40 -2.39 -0.02 1.27 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 2.27 7.03 -2.39 -0.02 2.25 16 43 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 44 H 0.15 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.14 5.34 3.52 -80.07 -0.28 5.06 16 50 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -70.12 390.84 1.41 -68.72 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -1.29 Total: 30.17 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 5.70 Total: 8.49 kcal Atomic # 7 Polarization: -125.21 SS G_CDS: -4.97 Total: -130.18 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.12 1.41 -68.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054203368.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.107 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds