Wall clock time and date at job start Wed Apr 1 2020 03:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35043 * 126.39432 * 2 1 4 4 N 1.30499 * 108.69858 * 179.97438 * 3 2 1 5 5 C 1.34129 * 109.25449 * 359.97438 * 4 3 2 6 6 C 1.34671 * 108.02244 * 359.73194 * 5 4 3 7 7 C 1.50696 * 126.59234 * 180.28305 * 6 5 4 8 8 H 1.08999 * 110.30624 * 204.46363 * 7 6 5 9 9 C 1.54388 * 110.34381 * 82.28867 * 7 6 5 10 10 N 1.48315 * 104.53809 * 217.33483 * 9 7 6 11 11 C 1.34774 * 127.76710 * 219.52762 * 10 9 7 12 12 O 1.21280 * 120.00469 * 359.89482 * 11 10 9 13 13 C 1.50708 * 119.99758 * 179.89504 * 11 10 9 14 14 C 1.52998 * 110.34516 * 60.83426 * 13 11 10 15 15 C 1.51098 * 110.38460 * 298.54830 * 13 11 10 16 16 C 1.30529 * 111.10568 * 224.75326 * 15 13 11 17 17 C 1.51108 * 111.10168 * 359.97438 * 16 15 13 18 18 C 1.54635 * 104.72518 * 16.43719 * 17 16 15 19 19 C 1.48148 * 104.39015 * 39.46423 * 10 9 7 20 20 C 1.54287 * 110.34239 * 326.64209 * 7 6 5 21 21 H 1.08998 * 110.34371 * 359.89254 * 20 7 6 22 22 N 1.46502 * 110.34111 * 237.73992 * 20 7 6 23 23 C 1.36936 * 120.00087 * 154.99900 * 22 20 7 24 24 H 1.07997 * 119.99926 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00183 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00021 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00233 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46608 * 90.00100 * 27 25 23 29 29 H 1.48496 * 109.47333 * 209.99987 * 27 25 23 30 30 H 1.48495 * 109.47181 * 330.00180 * 27 25 23 31 31 H 1.08999 * 109.46871 * 90.02659 * 1 2 3 32 32 H 1.08994 * 109.46947 * 210.02366 * 1 2 3 33 33 H 1.08997 * 109.47271 * 330.02883 * 1 2 3 34 34 H 1.08001 * 125.65034 * 359.96055 * 3 2 1 35 35 H 1.08004 * 125.99036 * 180.02562 * 5 4 3 36 36 H 1.09006 * 110.40566 * 336.04620 * 9 7 6 37 37 H 1.08994 * 110.40823 * 98.47974 * 9 7 6 38 38 H 1.08998 * 109.47295 * 60.70096 * 14 13 11 39 39 H 1.08998 * 109.47048 * 180.70109 * 14 13 11 40 40 H 1.09004 * 109.47113 * 300.69894 * 14 13 11 41 41 H 1.08004 * 124.45204 * 44.77009 * 15 13 11 42 42 H 1.08000 * 124.45037 * 180.02562 * 16 15 13 43 43 H 1.09001 * 110.38690 * 135.24739 * 17 16 15 44 44 H 1.09003 * 110.38446 * 257.62733 * 17 16 15 45 45 H 1.08999 * 111.04081 * 217.33365 * 18 17 16 46 46 H 1.09003 * 111.03819 * 93.39514 * 18 17 16 47 47 H 1.09000 * 110.40095 * 201.69008 * 19 10 9 48 48 H 1.08995 * 110.51157 * 79.30871 * 19 10 9 49 49 H 0.96997 * 119.99896 * 335.00429 * 22 20 7 50 50 H 0.96999 * 120.00364 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 0.0006 5 6 3.5460 -0.6504 0.0015 6 6 2.2772 -1.1018 0.0075 7 6 1.8364 -2.5428 0.0166 8 1 0.8348 -2.6346 -0.4034 9 6 1.8691 -3.1050 1.4541 10 7 2.3366 -4.5036 1.2963 11 6 1.9054 -5.5974 1.9552 12 8 1.0336 -5.4968 2.7922 13 6 2.5067 -6.9457 1.6518 14 6 4.0071 -6.9385 1.9512 15 6 2.2596 -7.3194 0.2088 16 6 1.8675 -8.5601 0.1052 17 6 1.7882 -9.2208 1.4619 18 6 1.7977 -8.0490 2.4708 19 6 3.3828 -4.4263 0.2502 20 6 2.8327 -3.4135 -0.7769 21 1 3.6399 -2.7986 -1.1748 22 7 2.1438 -4.1137 -1.8638 23 6 2.8418 -4.5120 -2.9725 24 1 3.9001 -4.3096 -3.0459 25 6 2.1889 -5.1750 -4.0026 26 7 0.8988 -5.4203 -3.9139 27 14 3.1409 -5.7177 -5.5154 28 1 3.6698 -7.0888 -5.3017 29 1 2.2396 -5.7132 -6.6955 30 1 4.2702 -4.7827 -5.7515 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 1.9334 2.1144 -0.0006 35 1 4.4369 -1.2611 0.0025 36 1 2.5687 -2.5378 2.0682 37 1 0.8720 -3.0830 1.8936 38 1 4.1659 -6.7194 3.0070 39 1 4.4293 -7.9153 1.7153 40 1 4.4950 -6.1757 1.3444 41 1 2.3905 -6.6483 -0.6272 42 1 1.6315 -9.0503 -0.8278 43 1 0.8646 -9.7924 1.5525 44 1 2.6523 -9.8659 1.6211 45 1 2.3709 -8.3045 3.3620 46 1 0.7827 -7.7500 2.7328 47 1 3.5264 -5.4009 -0.2164 48 1 4.3206 -4.0668 0.6738 49 1 1.1932 -4.2950 -1.7981 50 1 0.4425 -5.8832 -4.6338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070679928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:55 Heat of formation + Delta-G solvation = 73.099004 kcal Electronic energy + Delta-G solvation = -31842.580362 eV Core-core repulsion = 27871.933533 eV Total energy + Delta-G solvation = -3970.646829 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.00717 -40.41005 -38.24962 -36.95415 -34.00855 -33.91108 -32.43969 -30.97830 -30.57891 -28.76823 -27.68959 -27.45703 -26.89658 -25.49576 -24.24026 -23.21684 -21.62650 -20.80147 -20.46423 -19.40181 -19.10256 -18.45737 -17.46198 -16.72858 -16.26359 -15.88727 -15.60239 -15.50228 -15.09433 -14.69435 -14.39222 -13.89123 -13.62213 -13.58291 -13.41677 -13.24374 -13.15177 -12.87502 -12.80428 -12.69165 -12.34640 -12.21867 -11.98244 -11.90032 -11.55466 -11.46588 -11.13879 -11.10813 -10.97367 -10.89784 -10.82736 -10.67804 -10.44735 -10.18055 -9.83661 -9.74987 -9.52139 -9.41961 -9.13080 -8.63096 -8.43997 -8.12002 -7.09420 -5.89324 -3.20151 2.17007 2.49743 2.87363 3.02922 3.27538 3.35544 3.35737 3.42808 3.43348 4.45577 4.59962 4.68351 4.70143 4.75053 4.81854 4.92327 5.03622 5.09033 5.12339 5.23182 5.35114 5.43021 5.44168 5.48241 5.48493 5.54684 5.58957 5.66995 5.75619 5.78830 5.84938 5.87817 5.90806 5.93994 6.08193 6.11383 6.17226 6.19550 6.28453 6.39581 6.42111 6.46035 6.57482 6.74306 6.92405 6.98646 7.18009 7.31977 7.59954 7.89239 8.22668 8.27064 8.47087 9.39603 9.92316 10.27386 11.31920 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007419 B = 0.005266 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3773.005225 B = 5316.006513 C = 8044.329060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.458 5.458 3 C 0.170 3.830 4 N -0.494 5.494 5 C -0.024 4.024 6 C 0.005 3.995 7 C -0.039 4.039 8 H 0.089 0.911 9 C 0.119 3.881 10 N -0.608 5.608 11 C 0.552 3.448 12 O -0.556 6.556 13 C -0.053 4.053 14 C -0.135 4.135 15 C -0.150 4.150 16 C -0.164 4.164 17 C -0.099 4.099 18 C -0.105 4.105 19 C 0.063 3.937 20 C 0.179 3.821 21 H 0.078 0.922 22 N -0.712 5.712 23 C -0.247 4.247 24 H 0.073 0.927 25 C -0.005 4.005 26 N -0.926 5.926 27 Si 0.903 3.097 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.201 0.799 35 H 0.168 0.832 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.061 0.939 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.389 2.882 11.396 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.141 5.141 3 C -0.112 4.112 4 N -0.212 5.212 5 C -0.171 4.171 6 C -0.110 4.110 7 C -0.060 4.060 8 H 0.107 0.893 9 C -0.005 4.005 10 N -0.340 5.340 11 C 0.342 3.658 12 O -0.434 6.434 13 C -0.056 4.056 14 C -0.193 4.193 15 C -0.168 4.168 16 C -0.182 4.182 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.063 4.063 20 C 0.066 3.934 21 H 0.095 0.905 22 N -0.352 5.352 23 C -0.378 4.378 24 H 0.091 0.909 25 C -0.202 4.202 26 N -0.574 5.574 27 Si 0.734 3.266 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.217 0.783 35 H 0.185 0.815 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.171 0.829 42 H 0.145 0.855 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.118 0.882 48 H 0.080 0.920 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.525 3.334 11.731 12.291 hybrid contribution -0.680 -0.749 -1.125 1.513 sum 0.845 2.586 10.606 10.950 Atomic orbital electron populations 1.22036 0.76855 1.04393 1.03913 1.45259 1.07506 1.06768 1.54586 1.24802 0.85794 0.93232 1.07342 1.70242 1.19354 1.12124 1.19510 1.21984 0.95791 0.90813 1.08546 1.21013 0.91091 0.88895 1.10032 1.20876 1.01723 0.87404 0.96040 0.89250 1.22276 1.00558 0.82074 0.95583 1.48832 1.39168 1.06380 1.39660 1.20057 0.81580 0.84534 0.79658 1.90627 1.32271 1.85972 1.34561 1.20604 0.96932 0.92404 0.95634 1.21847 0.92583 1.03176 1.01671 1.23510 0.99898 0.97825 0.95586 1.23269 1.00519 0.96375 0.98012 1.21386 1.01651 0.97714 0.92884 1.22471 1.01834 0.93058 0.96922 1.23827 0.89692 1.03916 0.88852 1.21195 0.93524 0.90761 0.87950 0.90464 1.42452 1.09028 1.67216 1.16505 1.19213 0.92975 1.30633 0.94989 0.90884 1.24720 0.95707 1.01181 0.98558 1.69658 1.07780 1.46271 1.33653 0.86256 0.78825 0.78597 0.82911 1.21583 1.21843 1.20639 0.90270 0.89626 0.89619 0.78272 0.81469 0.91109 0.90572 0.92364 0.91481 0.91249 0.82928 0.85463 0.91278 0.90974 0.90923 0.89621 0.88232 0.92047 0.78111 0.93405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.85 59.85 0.65 1.30 16 2 N -0.46 -5.85 3.15 -121.37 -0.38 -6.23 16 3 C 0.17 2.17 12.56 -90.38 -1.14 1.04 16 4 N -0.49 -7.76 11.25 -14.66 -0.16 -7.93 16 5 C -0.02 -0.37 10.67 -17.81 -0.19 -0.56 16 6 C 0.00 0.07 5.78 -81.60 -0.47 -0.40 16 7 C -0.04 -0.59 2.95 -90.37 -0.27 -0.86 16 8 H 0.09 1.49 7.19 -51.93 -0.37 1.12 16 9 C 0.12 1.75 6.59 -2.31 -0.02 1.74 16 10 N -0.61 -9.72 3.31 -169.17 -0.56 -10.28 16 11 C 0.55 9.59 6.68 -10.98 -0.07 9.51 16 12 O -0.56 -11.10 15.78 5.56 0.09 -11.01 16 13 C -0.05 -0.79 0.56 -155.76 -0.09 -0.88 16 14 C -0.14 -1.70 8.28 37.16 0.31 -1.39 16 15 C -0.15 -2.50 8.29 -35.70 -0.30 -2.80 16 16 C -0.16 -2.50 10.78 -35.69 -0.38 -2.88 16 17 C -0.10 -1.26 6.81 -26.82 -0.18 -1.44 16 18 C -0.11 -1.46 5.99 -25.02 -0.15 -1.61 16 19 C 0.06 0.97 4.76 -2.41 -0.01 0.96 16 20 C 0.18 3.09 3.20 -66.53 -0.21 2.88 16 21 H 0.08 1.37 6.37 -51.93 -0.33 1.04 16 22 N -0.71 -15.64 5.11 -52.07 -0.27 -15.90 16 23 C -0.25 -6.13 9.96 -15.06 -0.15 -6.28 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 26 N -0.93 -25.94 13.06 55.49 0.72 -25.22 16 27 Si 0.90 21.10 29.55 -169.99 -5.02 16.08 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.78 7.67 -51.93 -0.40 0.39 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.20 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.17 2.36 7.49 -52.48 -0.39 1.97 16 36 H 0.07 0.98 7.86 -51.93 -0.41 0.57 16 37 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.87 5.53 -51.93 -0.29 0.58 16 41 H 0.15 2.99 6.27 -52.48 -0.33 2.66 16 42 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.87 7.90 -51.93 -0.41 0.46 16 46 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 47 H 0.10 1.68 4.25 -51.93 -0.22 1.46 16 48 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 49 H 0.38 9.34 7.56 -40.82 -0.31 9.03 16 50 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 394.90 15.07 5.95 5.95 Total: -1.00 -31.37 394.90 -9.98 -41.35 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -7.58 Total: 15.07 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.77 Total: -1.89 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.65 Total: -65.55 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.37 -9.98 -41.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070679928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.451 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds