Wall clock time and date at job start Wed Apr 1 2020 03:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35043 * 126.39432 * 2 1 4 4 N 1.30499 * 108.69858 * 179.97438 * 3 2 1 5 5 C 1.34129 * 109.25449 * 359.97438 * 4 3 2 6 6 C 1.34671 * 108.02244 * 359.73194 * 5 4 3 7 7 C 1.50696 * 126.59234 * 180.28305 * 6 5 4 8 8 H 1.08999 * 110.30624 * 204.46363 * 7 6 5 9 9 C 1.54388 * 110.34381 * 82.28867 * 7 6 5 10 10 N 1.48315 * 104.53809 * 217.33483 * 9 7 6 11 11 C 1.34774 * 127.76710 * 219.52762 * 10 9 7 12 12 O 1.21280 * 120.00469 * 359.89482 * 11 10 9 13 13 C 1.50708 * 119.99758 * 179.89504 * 11 10 9 14 14 C 1.52998 * 110.34516 * 60.83426 * 13 11 10 15 15 C 1.51098 * 110.38460 * 298.54830 * 13 11 10 16 16 C 1.30529 * 111.10568 * 224.75326 * 15 13 11 17 17 C 1.51108 * 111.10168 * 359.97438 * 16 15 13 18 18 C 1.54635 * 104.72518 * 16.43719 * 17 16 15 19 19 C 1.48148 * 104.39015 * 39.46423 * 10 9 7 20 20 C 1.54287 * 110.34239 * 326.64209 * 7 6 5 21 21 H 1.08998 * 110.34371 * 359.89254 * 20 7 6 22 22 N 1.46502 * 110.34111 * 237.73992 * 20 7 6 23 23 C 1.36936 * 120.00087 * 154.99900 * 22 20 7 24 24 H 1.07997 * 119.99926 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00183 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00021 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00233 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46608 * 90.00100 * 27 25 23 29 29 H 1.48496 * 109.47333 * 209.99987 * 27 25 23 30 30 H 1.48495 * 109.47181 * 330.00180 * 27 25 23 31 31 H 1.08999 * 109.46871 * 90.02659 * 1 2 3 32 32 H 1.08994 * 109.46947 * 210.02366 * 1 2 3 33 33 H 1.08997 * 109.47271 * 330.02883 * 1 2 3 34 34 H 1.08001 * 125.65034 * 359.96055 * 3 2 1 35 35 H 1.08004 * 125.99036 * 180.02562 * 5 4 3 36 36 H 1.09006 * 110.40566 * 336.04620 * 9 7 6 37 37 H 1.08994 * 110.40823 * 98.47974 * 9 7 6 38 38 H 1.08998 * 109.47295 * 60.70096 * 14 13 11 39 39 H 1.08998 * 109.47048 * 180.70109 * 14 13 11 40 40 H 1.09004 * 109.47113 * 300.69894 * 14 13 11 41 41 H 1.08004 * 124.45204 * 44.77009 * 15 13 11 42 42 H 1.08000 * 124.45037 * 180.02562 * 16 15 13 43 43 H 1.09001 * 110.38690 * 135.24739 * 17 16 15 44 44 H 1.09003 * 110.38446 * 257.62733 * 17 16 15 45 45 H 1.08999 * 111.04081 * 217.33365 * 18 17 16 46 46 H 1.09003 * 111.03819 * 93.39514 * 18 17 16 47 47 H 1.09000 * 110.40095 * 201.69008 * 19 10 9 48 48 H 1.08995 * 110.51157 * 79.30871 * 19 10 9 49 49 H 0.96997 * 119.99896 * 335.00429 * 22 20 7 50 50 H 0.96999 * 120.00364 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6904 0.0006 5 6 3.5460 -0.6504 0.0015 6 6 2.2772 -1.1018 0.0075 7 6 1.8364 -2.5428 0.0166 8 1 0.8348 -2.6346 -0.4034 9 6 1.8691 -3.1050 1.4541 10 7 2.3366 -4.5036 1.2963 11 6 1.9054 -5.5974 1.9552 12 8 1.0336 -5.4968 2.7922 13 6 2.5067 -6.9457 1.6518 14 6 4.0071 -6.9385 1.9512 15 6 2.2596 -7.3194 0.2088 16 6 1.8675 -8.5601 0.1052 17 6 1.7882 -9.2208 1.4619 18 6 1.7977 -8.0490 2.4708 19 6 3.3828 -4.4263 0.2502 20 6 2.8327 -3.4135 -0.7769 21 1 3.6399 -2.7986 -1.1748 22 7 2.1438 -4.1137 -1.8638 23 6 2.8418 -4.5120 -2.9725 24 1 3.9001 -4.3096 -3.0459 25 6 2.1889 -5.1750 -4.0026 26 7 0.8988 -5.4203 -3.9139 27 14 3.1409 -5.7177 -5.5154 28 1 3.6698 -7.0888 -5.3017 29 1 2.2396 -5.7132 -6.6955 30 1 4.2702 -4.7827 -5.7515 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3633 -0.8897 0.5142 33 1 -0.3633 0.8902 0.5134 34 1 1.9334 2.1144 -0.0006 35 1 4.4369 -1.2611 0.0025 36 1 2.5687 -2.5378 2.0682 37 1 0.8720 -3.0830 1.8936 38 1 4.1659 -6.7194 3.0070 39 1 4.4293 -7.9153 1.7153 40 1 4.4950 -6.1757 1.3444 41 1 2.3905 -6.6483 -0.6272 42 1 1.6315 -9.0503 -0.8278 43 1 0.8646 -9.7924 1.5525 44 1 2.6523 -9.8659 1.6211 45 1 2.3709 -8.3045 3.3620 46 1 0.7827 -7.7500 2.7328 47 1 3.5264 -5.4009 -0.2164 48 1 4.3206 -4.0668 0.6738 49 1 1.1932 -4.2950 -1.7981 50 1 0.4425 -5.8832 -4.6338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070679928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:54 Heat of formation + Delta-G solvation = 55.750016 kcal Electronic energy + Delta-G solvation = -31843.332670 eV Core-core repulsion = 27871.933533 eV Total energy + Delta-G solvation = -3971.399137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.08292 -41.67780 -39.52829 -38.33086 -35.74983 -34.90607 -33.80511 -32.52597 -31.86084 -29.92093 -29.12709 -28.69847 -27.77488 -26.68332 -25.80941 -24.66656 -22.82094 -21.96974 -21.68557 -20.66248 -20.35603 -19.71400 -19.09234 -18.01278 -17.50802 -17.29446 -16.79522 -16.59695 -16.39361 -16.20130 -15.59999 -15.30651 -15.22380 -14.88936 -14.62427 -14.56312 -14.25703 -13.97326 -13.77979 -13.63037 -13.49945 -13.37289 -13.31872 -13.17663 -12.98855 -12.80048 -12.60205 -12.53947 -12.38040 -12.22956 -12.16735 -12.07080 -11.92170 -11.70940 -11.64721 -11.03928 -10.88573 -10.79679 -10.45068 -9.84405 -9.82119 -9.30721 -8.89708 -7.90802 -5.19135 1.09101 1.24608 1.48991 1.50735 1.57364 1.69050 1.89029 2.05245 2.24348 2.57415 3.37605 3.40032 3.52063 3.54403 3.69660 3.79738 3.92294 3.95223 4.01117 4.06418 4.08736 4.22066 4.31713 4.35883 4.39979 4.41988 4.50544 4.59313 4.61964 4.67611 4.69843 4.74560 4.79374 4.80645 4.92124 4.94290 5.00197 5.01389 5.10004 5.18572 5.23630 5.32317 5.40661 5.45957 5.58963 5.72134 5.80211 5.92100 6.28321 6.35871 6.56288 7.12216 7.15772 7.36898 8.07364 8.31888 9.31430 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007419 B = 0.005266 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3773.005225 B = 5316.006513 C = 8044.329060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.460 5.460 3 C 0.182 3.818 4 N -0.530 5.530 5 C -0.036 4.036 6 C -0.011 4.011 7 C -0.020 4.020 8 H 0.072 0.928 9 C 0.124 3.876 10 N -0.608 5.608 11 C 0.544 3.456 12 O -0.587 6.587 13 C -0.048 4.048 14 C -0.131 4.131 15 C -0.171 4.171 16 C -0.161 4.161 17 C -0.090 4.090 18 C -0.104 4.104 19 C 0.073 3.927 20 C 0.175 3.825 21 H 0.078 0.922 22 N -0.719 5.719 23 C -0.231 4.231 24 H 0.080 0.920 25 C -0.063 4.063 26 N -0.963 5.963 27 Si 0.958 3.042 28 H -0.288 1.288 29 H -0.304 1.304 30 H -0.271 1.271 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.241 0.759 35 H 0.172 0.828 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.062 0.938 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.603 3.316 12.725 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.142 5.142 3 C -0.100 4.100 4 N -0.249 5.249 5 C -0.183 4.183 6 C -0.127 4.127 7 C -0.042 4.042 8 H 0.090 0.910 9 C 0.001 3.999 10 N -0.339 5.339 11 C 0.334 3.666 12 O -0.468 6.468 13 C -0.051 4.051 14 C -0.188 4.188 15 C -0.190 4.190 16 C -0.179 4.179 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.052 4.052 20 C 0.064 3.936 21 H 0.096 0.904 22 N -0.358 5.358 23 C -0.363 4.363 24 H 0.098 0.902 25 C -0.256 4.256 26 N -0.613 5.613 27 Si 0.789 3.211 28 H -0.215 1.215 29 H -0.231 1.231 30 H -0.196 1.196 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.257 0.743 35 H 0.189 0.811 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.099 0.901 44 H 0.118 0.882 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.107 0.893 48 H 0.110 0.890 49 H 0.202 0.798 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.782 3.796 13.081 13.902 hybrid contribution -1.078 -0.768 -1.512 2.010 sum 1.704 3.027 11.569 12.079 Atomic orbital electron populations 1.22287 0.74851 1.06098 1.04375 1.45471 1.08777 1.06147 1.53788 1.25613 0.85067 0.94651 1.04680 1.70238 1.21137 1.12167 1.21338 1.22158 0.96204 0.91208 1.08746 1.20839 0.91479 0.88918 1.11460 1.20552 1.00004 0.87948 0.95708 0.91013 1.22298 1.00683 0.81636 0.95325 1.48891 1.39057 1.06707 1.39238 1.20582 0.81213 0.85524 0.79257 1.90604 1.33610 1.86535 1.36093 1.20648 0.98633 0.91284 0.94571 1.21851 0.90513 1.04103 1.02372 1.23303 1.01939 0.97984 0.95739 1.23517 0.98748 0.96176 0.99449 1.21393 1.03465 0.97431 0.90420 1.22483 1.00779 0.92924 0.97945 1.23662 0.90502 1.02727 0.88284 1.21358 0.93715 0.91086 0.87430 0.90437 1.42531 1.08376 1.67645 1.17219 1.19542 0.93250 1.28349 0.95142 0.90173 1.25340 0.96397 1.02677 1.01202 1.69804 1.09192 1.48232 1.34103 0.85367 0.77657 0.78294 0.79823 1.21484 1.23109 1.19641 0.90394 0.90020 0.85934 0.74289 0.81086 0.89554 0.91160 0.91135 0.89906 0.91494 0.86275 0.85874 0.90071 0.88249 0.88558 0.91899 0.89347 0.89003 0.79775 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.85 127.77 1.39 2.47 16 2 N -0.46 -10.98 3.15 -537.89 -1.70 -12.68 16 3 C 0.18 4.22 12.56 180.26 2.26 6.48 16 4 N -0.53 -15.87 11.25 -200.30 -2.25 -18.12 16 5 C -0.04 -1.07 10.67 83.52 0.89 -0.18 16 6 C -0.01 -0.32 5.78 40.95 0.24 -0.08 16 7 C -0.02 -0.63 2.95 -10.63 -0.03 -0.66 16 8 H 0.07 2.47 7.19 -2.39 -0.02 2.45 16 9 C 0.12 3.61 6.59 86.50 0.57 4.18 16 10 N -0.61 -19.29 3.31 -807.52 -2.67 -21.96 16 11 C 0.54 18.82 6.68 87.66 0.59 19.40 16 12 O -0.59 -23.60 15.78 -3.03 -0.05 -23.65 16 13 C -0.05 -1.42 0.56 -52.99 -0.03 -1.45 16 14 C -0.13 -3.01 8.28 71.98 0.60 -2.42 16 15 C -0.17 -5.76 8.29 26.26 0.22 -5.54 16 16 C -0.16 -4.84 10.78 26.26 0.28 -4.56 16 17 C -0.09 -2.10 6.81 30.53 0.21 -1.89 16 18 C -0.10 -2.71 5.99 31.70 0.19 -2.52 16 19 C 0.07 2.23 4.76 86.53 0.41 2.64 16 20 C 0.17 6.07 3.20 45.90 0.15 6.22 16 21 H 0.08 2.72 6.37 -2.39 -0.02 2.71 16 22 N -0.72 -32.33 5.11 -318.65 -1.63 -33.96 16 23 C -0.23 -11.59 9.96 84.03 0.84 -10.75 16 24 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 25 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 26 N -0.96 -55.75 13.06 21.65 0.28 -55.47 16 27 Si 0.96 44.04 29.55 68.60 2.03 46.07 16 28 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 29 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.43 7.67 -2.39 -0.02 1.41 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.24 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.17 4.70 7.49 -2.91 -0.02 4.68 16 36 H 0.09 2.29 7.86 -2.38 -0.02 2.27 16 37 H 0.07 2.15 7.89 -2.39 -0.02 2.13 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.55 5.53 -2.38 -0.01 1.54 16 41 H 0.12 4.86 6.27 -2.91 -0.02 4.84 16 42 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.10 2.04 7.90 -2.39 -0.02 2.03 16 46 H 0.06 1.94 7.04 -2.39 -0.02 1.93 16 47 H 0.09 2.99 4.25 -2.39 -0.01 2.98 16 48 H 0.09 2.28 8.04 -2.39 -0.02 2.26 16 49 H 0.37 18.73 7.56 -92.71 -0.70 18.03 16 50 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.67 394.90 3.50 -66.17 By element: Atomic # 1 Polarization: 44.90 SS G_CDS: 0.26 Total: 45.16 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 9.23 Total: 8.44 kcal Atomic # 7 Polarization: -134.22 SS G_CDS: -7.97 Total: -142.19 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -69.67 3.50 -66.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070679928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.920 kcal (2) G-P(sol) polarization free energy of solvation -69.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds