Wall clock time and date at job start Wed Apr 1 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.51584 * 135.78324 * 2 1 4 4 C 1.53837 * 86.75572 * 154.84349 * 3 2 1 5 5 C 1.52998 * 113.65619 * 270.21855 * 4 3 2 6 6 C 1.50699 * 113.65917 * 139.27084 * 4 3 2 7 7 O 1.21285 * 119.99918 * 8.33364 * 6 4 3 8 8 N 1.34772 * 120.00358 * 188.33459 * 6 4 3 9 9 C 1.48147 * 127.84039 * 175.58750 * 8 6 4 10 10 C 1.54394 * 104.61760 * 219.56863 * 9 8 6 11 11 H 1.08999 * 110.43423 * 95.04944 * 10 9 8 12 12 C 1.50700 * 110.33776 * 217.26111 * 10 9 8 13 13 C 1.34677 * 126.59180 * 80.70861 * 12 10 9 14 14 N 1.34123 * 108.02030 * 180.28072 * 13 12 10 15 15 C 1.30502 * 109.25622 * 359.72288 * 14 13 12 16 16 N 1.35046 * 108.70010 * 0.02562 * 15 14 13 17 17 C 1.46503 * 126.39801 * 179.97438 * 16 15 14 18 18 C 1.54284 * 104.95816 * 336.13019 * 10 9 8 19 19 H 1.09001 * 110.34344 * 241.13260 * 18 10 9 20 20 N 1.46497 * 110.34094 * 118.97949 * 18 10 9 21 21 C 1.36939 * 119.99962 * 154.99955 * 20 18 10 22 22 H 1.08004 * 120.00097 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00167 * 180.02562 * 21 20 18 24 24 N 1.31617 * 119.99734 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00241 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47143 * 59.99650 * 25 23 21 27 27 H 1.48495 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46693 * 299.99794 * 25 23 21 29 29 C 1.48150 * 127.83756 * 355.56677 * 8 6 4 30 30 C 1.51581 * 135.78066 * 179.97438 * 2 1 3 31 31 H 1.08001 * 120.00288 * 0.02562 * 1 2 3 32 32 H 1.08005 * 120.00120 * 180.02562 * 1 2 3 33 33 H 1.08994 * 113.66357 * 40.37503 * 3 2 1 34 34 H 1.08995 * 113.74762 * 269.32188 * 3 2 1 35 35 H 1.09003 * 109.47454 * 282.35142 * 5 4 3 36 36 H 1.08995 * 109.47326 * 42.35660 * 5 4 3 37 37 H 1.09005 * 109.47148 * 162.35479 * 5 4 3 38 38 H 1.08996 * 110.40569 * 100.78028 * 9 8 6 39 39 H 1.09001 * 110.40548 * 338.34632 * 9 8 6 40 40 H 1.07993 * 125.98819 * 359.96630 * 13 12 10 41 41 H 1.08001 * 125.64939 * 179.97438 * 15 14 13 42 42 H 1.08994 * 109.46677 * 90.02378 * 17 16 15 43 43 H 1.09001 * 109.47021 * 210.02482 * 17 16 15 44 44 H 1.09008 * 109.46988 * 330.02484 * 17 16 15 45 45 H 0.96995 * 120.00421 * 334.99787 * 20 18 10 46 46 H 0.97005 * 120.00042 * 180.02562 * 24 23 21 47 47 H 1.09001 * 110.40583 * 21.64650 * 29 8 6 48 48 H 1.09002 * 110.50371 * 259.27026 * 29 8 6 49 49 H 1.08997 * 113.66850 * 90.69012 * 30 2 1 50 50 H 1.09004 * 113.66431 * 319.61768 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6529 5 6 3.2460 0.0016 2.1818 6 6 4.7129 -0.0001 0.1195 7 8 5.0773 0.8802 -0.6310 8 7 5.5685 -0.9783 0.4764 9 6 6.9510 -1.1982 -0.0086 10 6 7.0718 -2.7299 -0.1597 11 1 6.8602 -3.0289 -1.1863 12 6 8.4488 -3.1892 0.2455 13 6 8.8893 -3.3946 1.5015 14 7 10.1686 -3.7916 1.4328 15 6 10.5358 -3.8457 0.1817 16 7 9.4912 -3.4806 -0.5924 17 6 9.4779 -3.4046 -2.0553 18 6 6.0097 -3.3096 0.7976 19 1 6.4839 -3.9265 1.5609 20 7 5.0242 -4.0941 0.0497 21 6 4.3226 -5.0890 0.6768 22 1 4.4956 -5.2950 1.7228 23 6 3.3891 -5.8328 -0.0319 24 7 3.1779 -5.5814 -1.3065 25 14 2.4316 -7.1895 0.8236 26 1 1.6516 -6.6119 1.9475 27 1 1.5046 -7.8277 -0.1451 28 1 3.3771 -8.2070 1.3488 29 6 5.3401 -2.0774 1.4432 30 6 2.3963 -1.0571 0.0005 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9353 0.0004 33 1 2.1795 1.9073 0.6467 34 1 2.7192 1.3547 -0.9976 35 1 3.8403 0.8303 2.5669 36 1 2.2117 0.1146 2.5064 37 1 3.6452 -0.9390 2.5614 38 1 7.6726 -0.8300 0.7206 39 1 7.0984 -0.7086 -0.9712 40 1 8.3149 -3.2581 2.4058 41 1 11.5135 -4.1339 -0.1754 42 1 9.1675 -4.3652 -2.4662 43 1 8.7790 -2.6307 -2.3727 44 1 10.4776 -3.1613 -2.4156 45 1 4.8685 -3.9089 -0.8895 46 1 2.5253 -6.1009 -1.8017 47 1 4.2722 -2.2510 1.5759 48 1 5.8088 -1.8478 2.4001 49 1 2.7183 -1.3541 -0.9976 50 1 2.1795 -1.9070 0.6477 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070687899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:04 Heat of formation + Delta-G solvation = 98.014321 kcal Electronic energy + Delta-G solvation = -31633.805407 eV Core-core repulsion = 27664.238988 eV Total energy + Delta-G solvation = -3969.566419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.01141 -40.49236 -38.42187 -36.98016 -34.00445 -33.91736 -32.42911 -31.20554 -30.62943 -27.98604 -27.70004 -27.26633 -26.90342 -25.68069 -24.76483 -23.44779 -21.76704 -21.53137 -20.46078 -19.31134 -18.58389 -17.56879 -17.44194 -16.72920 -16.52108 -15.69892 -15.53888 -15.51680 -14.92257 -14.59853 -14.42530 -14.21054 -13.71418 -13.60003 -13.57733 -13.37438 -13.31173 -13.05263 -12.83888 -12.72887 -12.42699 -12.25781 -12.09902 -11.82573 -11.74601 -11.64202 -11.25914 -11.06614 -10.88991 -10.86039 -10.70940 -10.63557 -10.21143 -9.97984 -9.83469 -9.75685 -9.43658 -9.41610 -9.13028 -8.92957 -8.45739 -8.12718 -7.08939 -5.89006 -3.19336 2.16331 2.36710 2.85636 2.91893 3.25608 3.34846 3.36521 3.42196 3.42802 4.45624 4.48529 4.55443 4.69236 4.70245 4.74957 4.81395 4.89712 5.02486 5.08438 5.09972 5.20208 5.34603 5.42605 5.47994 5.49410 5.54310 5.59519 5.74023 5.74992 5.81526 5.85158 5.88058 5.90777 5.98596 6.06373 6.10078 6.16425 6.20857 6.21963 6.34770 6.42003 6.45673 6.56710 6.59975 6.74854 6.92216 7.08278 7.31456 7.59377 7.86847 8.22199 8.27636 8.43980 9.40079 9.92834 10.27844 11.32476 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.004987 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.080155 B = 5613.670181 C = 8275.642705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C -0.079 4.079 4 C -0.098 4.098 5 C -0.130 4.130 6 C 0.555 3.445 7 O -0.556 6.556 8 N -0.608 5.608 9 C 0.119 3.881 10 C -0.039 4.039 11 H 0.089 0.911 12 C 0.005 3.995 13 C -0.024 4.024 14 N -0.494 5.494 15 C 0.170 3.830 16 N -0.458 5.458 17 C 0.071 3.929 18 C 0.179 3.821 19 H 0.077 0.923 20 N -0.711 5.711 21 C -0.246 4.246 22 H 0.072 0.928 23 C -0.005 4.005 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.068 3.932 30 C -0.079 4.079 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.101 0.899 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.168 0.832 41 H 0.201 0.799 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.098 0.902 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.934 9.474 1.663 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.117 4.117 4 C -0.101 4.101 5 C -0.188 4.188 6 C 0.345 3.655 7 O -0.435 6.435 8 N -0.340 5.340 9 C -0.005 4.005 10 C -0.060 4.060 11 H 0.107 0.893 12 C -0.111 4.111 13 C -0.171 4.171 14 N -0.212 5.212 15 C -0.112 4.112 16 N -0.141 5.141 17 C -0.072 4.072 18 C 0.066 3.934 19 H 0.095 0.905 20 N -0.351 5.351 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.201 4.201 24 N -0.575 5.575 25 Si 0.735 3.265 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.058 4.058 30 C -0.116 4.116 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.185 0.815 41 H 0.217 0.783 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.218 0.782 46 H 0.066 0.934 47 H 0.114 0.886 48 H 0.080 0.920 49 H 0.116 0.884 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.480 9.678 1.841 11.792 hybrid contribution -1.025 -0.723 -0.714 1.444 sum 5.455 8.954 1.127 10.546 Atomic orbital electron populations 1.22817 0.93443 1.01877 1.03379 1.22890 0.93932 0.98311 0.99221 1.22211 0.92375 0.95336 1.01734 1.21835 0.90791 1.00270 0.97191 1.21717 1.02729 1.02961 0.91353 1.19927 0.85780 0.79726 0.80096 1.90643 1.78104 1.36788 1.37928 1.48805 1.13886 1.28039 1.43271 1.22245 0.83797 0.94157 1.00259 1.20880 0.88946 0.94281 1.01929 0.89258 1.21012 0.90890 1.08401 0.90755 1.21978 0.92311 1.06735 0.96105 1.70241 1.13142 1.19313 1.18524 1.24804 0.94323 1.05719 0.86308 1.45259 1.11138 1.50150 1.07558 1.22038 1.04123 1.04109 0.76924 1.21187 0.88446 0.90831 0.92961 0.90537 1.42410 1.43878 1.38299 1.10475 1.19164 1.15098 1.08949 0.94507 0.90987 1.24707 0.99894 0.99752 0.95795 1.69643 1.37581 1.42929 1.07352 0.86328 0.79736 0.82116 0.78364 1.21114 1.21744 1.21212 1.23751 1.03591 0.87249 0.91201 1.22239 0.91803 0.95589 1.01991 0.88025 0.87584 0.90765 0.88088 0.92295 0.91463 0.90709 0.91080 0.90622 0.81488 0.78270 0.90255 0.89634 0.89618 0.78166 0.93371 0.88559 0.92022 0.88418 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.71 29.02 0.43 -1.81 16 2 C -0.14 -2.02 6.58 -100.28 -0.66 -2.68 16 3 C -0.08 -1.10 6.92 -27.01 -0.19 -1.29 16 4 C -0.10 -1.44 0.73 -154.88 -0.11 -1.56 16 5 C -0.13 -1.64 8.65 37.16 0.32 -1.32 16 6 C 0.56 9.41 6.97 -10.99 -0.08 9.33 16 7 O -0.56 -10.88 16.28 5.55 0.09 -10.79 16 8 N -0.61 -9.54 3.32 -169.30 -0.56 -10.10 16 9 C 0.12 1.73 6.57 -2.41 -0.02 1.72 16 10 C -0.04 -0.58 2.98 -90.37 -0.27 -0.85 16 11 H 0.09 1.46 7.13 -51.93 -0.37 1.09 16 12 C 0.00 0.07 5.76 -81.60 -0.47 -0.40 16 13 C -0.02 -0.36 10.67 -17.81 -0.19 -0.55 16 14 N -0.49 -7.73 11.25 -14.66 -0.16 -7.89 16 15 C 0.17 2.17 12.56 -90.37 -1.14 1.03 16 16 N -0.46 -5.81 3.15 -121.36 -0.38 -6.19 16 17 C 0.07 0.64 10.84 59.85 0.65 1.29 16 18 C 0.18 3.07 3.20 -66.53 -0.21 2.86 16 19 H 0.08 1.36 6.45 -51.93 -0.34 1.02 16 20 N -0.71 -15.57 5.12 -52.07 -0.27 -15.83 16 21 C -0.25 -6.12 9.96 -15.06 -0.15 -6.27 16 22 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 23 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 24 N -0.93 -25.92 13.06 55.49 0.72 -25.19 16 25 Si 0.90 21.10 29.55 -169.99 -5.02 16.08 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.07 1.04 5.32 -2.41 -0.01 1.03 16 30 C -0.08 -1.27 6.68 -27.02 -0.18 -1.45 16 31 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.11 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.10 1.52 7.54 -51.93 -0.39 1.13 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.78 7.70 -51.93 -0.40 0.38 16 37 H 0.07 0.94 5.28 -51.93 -0.27 0.67 16 38 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 39 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 40 H 0.17 2.34 7.57 -52.49 -0.40 1.94 16 41 H 0.20 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.77 7.64 -51.93 -0.40 0.37 16 44 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.38 9.24 7.55 -40.82 -0.31 8.93 16 46 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.10 1.61 5.25 -51.93 -0.27 1.33 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.10 1.77 8.09 -51.93 -0.42 1.34 16 50 H 0.09 1.55 7.89 -51.93 -0.41 1.14 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -31.23 402.50 -9.61 -40.84 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -7.72 Total: 14.16 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.37 Total: -1.14 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.65 Total: -65.21 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.23 -9.61 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070687899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.852 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds